RNA id: XM_007238167.3


Basic Information

Item Value
RNA id XM_007238167.3
length 4811
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC103044887
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22181203 ~ 22243904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctctctttccctcctccctctctctccactgctTGTCTTGCCCCAGTCTCATCCTCCTTTCCTCTTTGCGCGCGAGCTCTCCTTCACCTTGGATCGACGTCAGTGGCGGTGCAGCAGTGCAGCATTAACGGGCTCCGCGTTCACGGCGTTTACACCGCTGACCGTTCTCCCTCTTgagcttcctcctcctctcctcctcctcctcttctcctgctgctgctgctccgcgGTGATGGCTGGGTGTCGGTGGTTCTAAGCGAGCTCCTTGGCGCAGTAGAAGCGCTGGAGACACGAACAGCGGGGCGGGGAGGGGGGTCGCGCGCTGATGTTCCTGGTGTGGAGAACGAGCTGACCATGCCGTGATGCTTCCTCTTCGACCCTGACGAAGCGCCCCTGGACGACTGGCCGTCACGCACACGCGCGGCTCCCCTCGGGCAGGAGAGCATGATGAGTGGAAGTGCTGCCCGGTTAGCAGCACCGATGCCGGGCTCCTCGCCGTGTCTGCTGCTGCctctgatgctgctgctgggcTGGTCTCTCGGGATGCCTCACGTCTTAAGATTCGGAGGGATATTTGAGTCCATTGAGAGTGGCCCATCCGGAGCAGAGGAGCTAGCCTTCAAATTTGCACTAAACACCATCAACAGAAACAGAACACTGCTGCCCAACACCACGCTCACCTACGACATCCAGAGGATCAACGTCTTTGACAGCTTCGAGGCCTCGAGGAAAGCTTGTGAGCAGCTCTCTTTAGGTGTAGCAGCCATATTTGGTCCCTCCCACAGCTCCTCAGCCAATGCGGTCCAGTCCATCTCCAATGCCTTGGGTGTGCCACACATCCAGACCAGGTGGAAGCACCAGGTCTCAGATAACCGAGACTCATATTATGTCAGCCTATACCCTGACTTCTCCTCTCTCAGCCGAGCAATCCTGGACCTCGTTCACTTCTTCAGGTGGGACTCCGTCACTGTGGTGTATGATGACAGCACAGggCTGATTCGTCTACAGGAGCTGATCAAGGCTCCTTCCAGATACAATATCCGTCTGAAGATACGCCAGTTGCCTGCAGAAACTAAGGATGCCAAACCACTGCTTAAAGATATGAAAAAATCGAAAGAGTTCCACGTCATTTTCGATTGCAGTCATGAAATGGCTGCCTGGATACTTAAGCAGGCACTCTCTATGGGCATGATGACAGAGTATTATCACTACATCTTCACAACGCTgGACCTGTTTGCATTGGACATGGAGCCGTATCGGTACAGCGGAGTGAACATGACCGGCTTTCGGATTCTGAACACAGAGAGTCCTCAAGTGTCCTCTATCGTTGAGAAGTGGTCCATGGAGAGACTGCAGGCCCCTCCCAAGCCAGACTCAGGACTTTTGGACGGATTTATGACGACAGATGCAGCACTGATGTTCGATGCAGTGCACGTTGTAGCAGTGGCAGTGCAGCAGTCCCAGCAGATCACTGTTAGCTCTCTGCAGTGTAACCGACATAAACCCTGGCGCTTCGGAGGGAGGTTCATGAGCCTTATCAAAGAGGCTTCCTGGGATGGGCTGACTGGACGAGTTCTCTTCAACAAAACAAATGGCTTAAGAACAGAGTTTGATCTAGACGTAATAAGTCTGAAGGAAGATGGACTAGAaaagATCGGCACATGGGAACCTGTGAATGGCCTAAATATGACAGAGCATCACAAGAGTAAAATGACCAATGTTACAAACTCCTTGTCCAACAAATCACTAAGGGTTGCCACTATtctgGAGGAACCCTATGTGATGTTTAAGAAGTCTGATAAGCCTCTGTGTGGAAATGACCGTTTTGAGGGCTACTGTGTGGATTTGCTGCGAGAGCTGGCTTCCATCCTGGGATTCCGCTACGAGATCCAGCTGGTGGAGGATGGAAAGTATGGGGCGCTGGAGGAAAGCACAGGCCAGTGGAACGGAATGGTCCGAGAACTTATGGACCACAAAGCAGACCTGGCAGTTGCTCCTCTGGCCATAACGTATGTGAGGGAGAAGGTGATTGATTTCTCAAAGCCATTCATGACACTGGGCATCAGCATCCTGTACCGCAAGCCCAATGGCACCAACCCTGGCGTCTTCTCTTTCCTCAACCCTCTGTCTCCCGATATCTGGATGTATATTCTGCTGGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTTCAGCCCGTACGAGTGGTATAACCCTCACCCCTGTAACCCAGACTCTGACATGGTGGAGAATAATTTTACTCTGCTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAACAAGGGTCTGAGCTGATGCCCAAGGCTTTGTCCACCAGAATAGTTGGAGGTATTTGGTGGTTTTTCACACTGATTATCATCTCCTCTTACACGGCCAATCTGGCTGCTTTTCTTACTGTGGAAAGGATGGAGTCTCCCATTGACTCGGCCGATGACCTGGCCAAGCAGACCAAGATTCCTTATGGTGTGGTGGAGGACGGATCTACCATGGCATTCTTCAAGAAAACAAAAATCTCCACTTATGATAAAATGTGGGAGTTCATGAACAGCAGGCGTCAGTCTGTGATGGTGAAGAGTGTGGAGGAAGGCATTCAGCGCGTTCTCACATCTGACTATGCGTTCCTCATGGAGTCCACCACCATCGAGTTTGTCACCCAGCGAAACTGTAACCTCACTCAAATCGGAGGACTCATCGACTCCAAGGCTTATGGAGTGGGAACACCCATGGGTTCTCCATACAGAGACAAGATCACCATAGCAATTCTGCAATTGCAGGAAGAAGGGAAGCTGCACATGATGAAGGAGAAGTGGTGGAGAGGAAACGGCTGTCCGGAGGAGGAGAGTAAGGAGGCCAGTGCGCTGGGGGTGCAGAACATTGGGGGCATCTTTATCGTGCTGGCAGCAGGACTGGTCCTCTCAGTGTTTGTGGCTGTAGGGGAAGTGCTGTACAAATCCAAGAAGAACGCACAGATGGAGAAGCGCTCGTTTTGTAGTGCCATGGTGGATGAGCTCACTGTGTCTCTAAAGTGTCAGCGGCGCCTCAAACAAAAACCACAGCCTCCTGCCATCGTCAAAACAGAGGAGGTGATTAACATGCACACCTTCAATGACAGGAGACTGCCGGGAAAAGAGACCATGGCCTGAATGTCGTCACCTCCCCTCCTTTCTCCCACTCAGGGGGTGAATCAATTTGGGGCGCAAGAGAGCCTGAACCAGAAGCTCTTGTCCCGAAACACTGTTTCCTGTGGAAATACAGAAAACTGGGCATAACAGATCTGCAAAACCTTACTGAACTGCATAGGCCTTTCTGGCCATTCTCTTGGTTTTGAGTCTCGAGCTTATTCAGCAATGTATGCagtttttttcacactgttaGCAACAGAATGAGATACTACAACACTTTCTTATGATTCATTTTTCAGTGCCAGCGGGTGGTCAGCATATCGCTGAACAGCAAGCTTCACAGGGTGCCATTTCAATCCCGTTTTTCATACACTTTTCTAGTGTAGCAGAATTATTTATAAATCAGGCTGTAACTATGAAAATGATTTagtctttcttttctgtttttaacttCTGCCACATTTATCGTGAGACAAAAACTTGTGGTCTGCAGCAAAGTGAAACAAACCTGGCTAAACTTAACCTAGCGGCAGGTTCAACCCCAGAACTGTGCAACATTCAATCTAAAGGTGGCagtcctaatatatatattatgactCAAAGCAGGTATTGTATGCTAGTTGACTGAACTGATTATAGCAAATCTTTGAACATTTTTCATATGACTACTTTGTTTGGGGAAGTTATGAGAGGATATGTGTAGATGTGAAGAGACccataaaaacatgtttaaactgCACCTCAGACAAAACGTATGAACAGATTAAAAGTACCATCACTATTGTGTGTAGCCACATTACCACATTGTTCAAGTTCAAGTCCAAGGTGTGGATCGCTTTTGCTGGCATGTGTTGTGAATGTACCATAATGTTGGAATGGCTAGAGGGGAGTATGCATTTACAGATAGAAATGCAGTATGGGTTACATGTGATGAGAACATAACATAGGACAGAGCACAAAATTTTACTTCCACCAAGCACTGCacatttgatttatttctgAGATTGTGAACACAGAGTTCTTGGGTGATTCCTTTGCACCTGAGAcagtatttaaaacatatagtGGTTTTAAGTAATTAGAATTTAATCTGATTAGAATATAGTTTTAAAACATTCACTTGacaataactatatataatGTGCCTGTTCTTACACAAAAACTGTTCAATGTAACTAAGAAATCTACAAAACCCACCTTGGAAAGTTAAAATCTGAATTAAGGTGTCATTAAGAAGAAAGTCAGAACTGCCCCAGGCTCTTTGAGCAAcaatcacactgaacactgtctCAGTTTAAATGATTTTAGCACTAAGAATGCTTTTGAGAAGCTGGGCCCAGAGTAGCTTATtaaacagagagataaagacaacacaagtaattCCACACTGCAGCCTATAACTGATCATTTAATACACTGAATTTGTATATCTGCTTAAGCTAAGTTTCCTTATGCGAATGTGGGTGGTGTGAGGGAAGCTATGGGGAAAGCATCACAACtatttcatatatacatatgatATCCACAGTGCGTTGGATTGTGAACTAAAAgatgtgaaaaaagaaagatgtgCATATATACTGTGAGCCGCCGGGGCGGGTGTGGGGGACCAAACACACCGAGACCAGGATAACTTAAACAACC

Function

GO: NA

KEGG:

id description
K05202 GRIK2; glutamate receptor, ionotropic kainate 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89044 lncRNA upstream 51875 22127389 ~ 22129328 (+) True G65993
TU88948 lncRNA upstream 88528 22092189 ~ 22092675 (+) True G65910
TU88918 lncRNA upstream 191660 21989245 ~ 21989543 (+) True G65882
TU88910 lncRNA upstream 211126 21969509 ~ 21970077 (+) True G65874
TU88909 lncRNA upstream 218758 21959215 ~ 21962445 (+) True G65873
TU89117 lncRNA downstream 34524 22278428 ~ 22278731 (+) True G66048
TU89122 lncRNA downstream 35844 22279748 ~ 22279994 (+) True G66053
TU89125 lncRNA downstream 36870 22280774 ~ 22281491 (+) True G66055
TU89127 lncRNA downstream 39530 22283434 ~ 22284072 (+) True G66056
TU89135 lncRNA downstream 74939 22318843 ~ 22319548 (+) True G66062
XM_022671526.1 mRNA upstream 19353 22104840 ~ 22161850 (+) True LOC103042836
XM_007237357.3 mRNA upstream 80567 21994110 ~ 22100636 (+) True ptprr
XM_022671525.1 mRNA upstream 224925 21932769 ~ 21956278 (+) False rab21
XM_007237355.3 mRNA upstream 224925 21932777 ~ 21956278 (+) True rab21
XM_007241662.3 mRNA upstream 269626 21905259 ~ 21911577 (+) True tmem19
XM_022671528.1 mRNA downstream 30737 22274641 ~ 22278022 (+) True dus4l
XM_007238165.3 mRNA downstream 30745 22274649 ~ 22278003 (+) False dus4l
XM_007238166.3 mRNA downstream 30759 22274663 ~ 22278003 (+) False dus4l
XM_007238164.3 mRNA downstream 40843 22284747 ~ 22297679 (+) True bcap29
XM_007238163.3 mRNA downstream 40843 22284747 ~ 22297679 (+) False bcap29
TU88777 other upstream 496369 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 1156629 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 1223568 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 2386924 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2840324 19280300 ~ 19340879 (+) True alyref
TU89211 other downstream 695698 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 755466 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 887190 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 887190 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 1200270 23444174 ~ 23444677 (+) True G66296

Expression Profile