RNA id: XM_007239003.3


Basic Information

Item Value
RNA id XM_007239003.3
length 2233
RNA type mRNA
GC content 0.52
exon number 8
gene id etv6
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23916306 ~ 23953720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGGGTTTCCCTTTAAGGGGGCTGCGCCTCACTGCTAGGAATTCACGTCATTTCGCCACCAAACACGACCGAATCAATGAGCGCAGCGCGAGTCTTCCAGGAAGGTGTTAACCATCACCTCGCCAAAATGTAGCGCCGCTGCAGGACAGAAGAGCACAGCAGCAGAAGTTGGAGGAAAGCTTTGTTGGTGTTTTCCGGGACGGGCGGGAGCGATGGAGCCGCAGGCCGAGtgatgagcagcagcagcagcgcgccGGCGGCTCGACAAACACTGAGGCCGGACTGTCTCTGCTTCTCCGCGGCGGCGGTTCCTCTGTTTCACagagaataaagaaaagaaggaggaggaggagaaaaggaaaGTGGAAACGGGAGAACTTCCTGAATTTGAGACATGTCCAGTTCCCCCTCGCAGgAGAGGAGTGCGTTCAGTCCCTCTGCCAGTCCACTGCCAAATTCCACTTCCTCTCCTGCCCATGCCCCTCCCCCTGTCGCTAACGCTAGGACAGACGAAGAGCCAAGCAGACTGCCTGGACACCTGCGTCTCCAGCCTGTGTTCTGGAGCAGAGAGGATGTTGGGCAATGGCTCCGCTgggcagagagagagtttgCACTGCGACCCATCTCAAGCGGAAGCTTCCAGATGAACGGCAAGGCTCTCCTGCTTCTCACCAAGGAGGACTTCCGCTACCGCTCTCCCCATTCAGGTGATGTCCTTTACGAACTCCTGCAGCACATTCTGAAGCAGAGAAAGACCCACTCGCCTTTCCCTTCCACATATTACCCAGGAACCCCCTTCCACTCACTGCCTGAAGCAGCACTTCAACAACACAAACTTgaggAAACGGTACTACGGACCCCACGTGGAACAGATGCTCTACACCTGCACCCCCCAACTATTGAGCTCCGGCATCGCTCACGCTCACCCCACCACACGGCACCAAGACGCTCGCCCGCTGATCCATCACAACTCCATTCCCTCAGCTCAGGGGAGGACCCCCAGCAAACGTCCTCCCAACTGCCCGACAGCAACAATCACCTCCCTGAAGACCTGTACTCACTGTCTGTATCTCCTACTGCTCCCAATGGCCATTGTCCCGCACCCCGCGAGGCTCCGCGGCCAGGCAGCCCCTGCCAGGAAGAGTCGGCACCACCCCGGGTCATCCAGCTGATGCCCAGCGCCATCATGCACCCTCTGCTCCTCAGCCCCGGACGAGGAGGGGTGCCGGGGGACTTCAGGCACGGCAGGGCAGCACCTCAGGAAAATGGCCGAGAGGGTAAAGGGCATCACCACCACAATCACCATCACACTCACCATCATCCCTCTCACCACCCCCTGAGCTTGGCGGGTCACCAGCAACCCcatcagctccaccagcagGAAGACACCCGCTACCGAAACCAGATCATCATGCCCGTCTCGCCACCAGAGGAGCAAGGAATGCCTATTGGACGCATTGCTGATTGCAGACTACTGTGGGACTACGTCTATCAGCTCCTCTCTGACAGTCGCTATGAGAACTATATCCGCTGGGAGGACCGTGAAACCAAAGTTTTCCGAATCCTCGATCCTAATGGCCTGGCTCGATTATGGGGAAACCATAAGAACAGGACCAACATGACGTATGAGAAAATGTCAAGAGCACTAAGACACTACTACAAACTGAACATCATCAGGAAAGAGCCAGGACAGAGACTTCTGTTCAGGTTCATGAAAACCCCGGACGAGATCATGAGCGGACAGACGGATCGTTTGGAACATATGGAGTCTGACACAGATGAACAGATATATGTGAAAGAGGAGTGCTGAGTCATGCCGCACGTTGAGACGAACTTTTAAAGCCGTAGATGCCTCGCCAATGTTCCGCTGACTTCAGCATCAACCAAGCAGGCCTAGACATTTTGCATAGATTAACTGGGGAGCAAGAGACATGGATATTTACTGCACTGTTTTCTATGCTGATTCTTGATAATTCAGTttctttctattattttatggtctatgcctaaaaaaacaaacatcaatATGACAATCATTTTAATGATAGATATTCCTTTTCAAATTGTTTCTTTAAAGTTTCTGGCACAATGAATGATTTTTGAGCTTTTCTGTaaggtttttttgttgtttttttttgtgtgttaagtgtgtattgtacacacacacttttgcaATTTGTGTAAACAAGTCATCCAAGAGATTAATTCAAGAATAAATTTTAATGACTgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89572 lncRNA upstream 4095 23911828 ~ 23912211 (+) True G66382
TU89529 lncRNA upstream 95329 23818073 ~ 23820977 (+) True G66353
TU89512 lncRNA upstream 316715 23595163 ~ 23599591 (+) True LOC111192880
XR_002650157.1 lncRNA upstream 317313 23594228 ~ 23598993 (+) False LOC111192880
TU89579 lncRNA downstream 22520 23976240 ~ 23977946 (+) True G66389
TU89679 lncRNA downstream 184185 24137905 ~ 24138185 (+) True G66472
TU89683 lncRNA downstream 232414 24186134 ~ 24186383 (+) True G66476
TU89690 lncRNA downstream 269285 24223005 ~ 24231186 (+) True G66480
TU89699 lncRNA downstream 370090 24323810 ~ 24324032 (+) True G66488
XM_007256038.3 mRNA upstream 196212 23698170 ~ 23720094 (+) True LOC103027234
XM_007256037.3 mRNA upstream 368049 23467533 ~ 23548257 (+) True rerg
XM_015607512.2 mRNA upstream 371463 23451563 ~ 23544843 (+) False rerg
XM_022671541.1 mRNA upstream 593190 23222518 ~ 23323116 (+) False eps8
XM_015602945.2 mRNA downstream 72741 24026461 ~ 24117713 (+) True LOC103023565
XM_015602946.2 mRNA downstream 72760 24026480 ~ 24117713 (+) False LOC103023565
XM_007229748.3 mRNA downstream 343197 24296917 ~ 24320066 (+) True lrig3
XM_022671556.1 mRNA downstream 414653 24368373 ~ 24383022 (+) False rpap3
XM_022671187.1 mRNA downstream 505683 24459403 ~ 24461001 (+) True LOC111192915
TU89518 other upstream 206230 23698152 ~ 23710076 (+) False LOC103027234
TU89474 other upstream 432373 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 471629 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 778352 23131094 ~ 23137954 (+) False crebl2
XR_002650203.1 other downstream 413772 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 414653 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 414653 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 564902 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 692006 24645726 ~ 24684580 (+) False lingo1

Expression Profile