RNA id: XM_007240405.3


Basic Information

Item Value
RNA id XM_007240405.3
length 2461
RNA type mRNA
GC content 0.53
exon number 7
gene id syt10
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 749881 ~ 780797 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGCGCCGGTACAGCCAGCGCCCGTTCGGTCAGCGCGCGGATGAGGCGGACGCACCGTGGCGCGCTCTCCTTTGTTTTACGCACGGCAGCAGGCTGCAGCGGGCAGCGCGCATGGCGTCCAACATACAATGGATTAAGCGGAAAGACATGAACGTCCGAAAGGAGGAAAAAGTCAGCCTGTGCCAGAGGGCACTCCAGATCGTCACGGAGCTGTGCCTCGCGGGCCACGTCGACCAGGAAAAATGCTCCGACATCTTCCCGATAGAGAGCAACATACCAGACATCTCTGTAAGTCTCCTAGCTGTGGTCGTGGGTTTCTGTGGGCTCGCTCTGTTGGtagtctctctctttgtgttttgGAAGCTGTGCTGGCCCATCTGGAGAAGCAAGGCCTTCTCCTCGCATGGCGACAGCATCCCACAAGGGGTCCTCCTCGAGGCTCCCCCAGTCAACCTGCCGCCTCCAAGCCCCTCGCCCAGGCCTCAGACACCTTCTGCTCCAGAGCCCAAGTCGACCAGGGTGTTGGCCTTGGGGCGCCAGGCCTCTCAGCAGCCGCAGCCTCcgcctcagcagcagcagcctcaggatgagctggaggagaagaagaggaaggtGCCTGAGGTGATGGTGAACGGCCGAAGCTCAGTCAAGCTGCTCGAGGCGGCCATGAAGATCAGCCAGACATCACCAGACATCCCAGCTGAGGTGCAGCAGGCCCTGCGCGACCGCATCAGCAAGCAGGCCAAAATCCAGCGGCAGACCACTGAgcccacctcctcctccagGCACAATTCATTCCGTCGCCACCTCCCGAGGCAGATGAATGTCTCCAGCGTGGACTTCAGCATGGACACCCTGCCTGTCCGGCAGTCTTCTGCGGTCAGCATCGGACGCATCAAGCCCGAGCTCTACAAGCAGAAGTCTGTGGACTCAGAGGAAGGGAACAAAGAGCCGGTGGAGACCTGTGGCAAGCTGAGCTTCGCCCTGAGCTACGACTATGAGGAACAGGCGTTGGTGGTACGCATCCTTAAGGCATTGGACTTGCCGGCCAAGGACTTCACGGGCACCTCTGACCCCTACGTAAAGATCTATTTGCTCCCCGAGCGTAAAAAGAAGTACCAGACAAAGGTCCATCGTAAGACACTCAACCCCACGTTCGATGAGGTGTTCCGGTTTCCGGTGGAGTACGAGCAGCTGTGTAACCGCAAGCTGCACTTCAGCGTCTTCGACTTTGACCGCTTCACCAGCCATGATATGATCGGAGAGGTGGTGGTGGACAATTTGTTTGAGCTGTCTGACCTGTCACGTGAGGCTGTGGTCTGGAAAGACATCCATGCATCAACTACAGAAAGTGTGGATTTAGGGGAAATCATGTACTCCCTCTGCTACCTTCCCACGGCTGGCCGCATGACCCTGACCGTCATCAAGTGCCGAAATCTGAAAGCCATGGACATCACTGGTGCTTCTGATCCGTATGTTAAAGTCTCTTTGATCTGCGACGGACGGAGGCTCAAGAAACGGAAGACCACCACCAAGAAGAACACACTGAATCCCGTTTATAATGAGGCCATCATCTTTGACATCCCACCCGAGAACGTGGAGCAAGTCAGCCTGTCGATCATGGTGATGGATTATGACAGAGTTGGGCACAATGAAGTGATCGGTGTGTGTCGGGCAGGCCCCGATGCTGAGGGGCTGGGCAGAGATCACTGGAATGAGATGCTAGCTTACCCACGCAAGCCCATCACACACTGGCATGCGCTGTGTGAGTGGCCTGGAAGAGCATCCAGTTTTGAAAGTCAGGGCTCCTGCCCCTCCCCGAAACCTCCACAGACTCCATAACCTGGGCGGATAACATCCTGAACCACACAAGTCTCCTCAAACACTTTAGCGCACACGTGCTTGGTTTGTATCATGAGCTATCTATTTTTCTCTTGTCGTAGCTTGTAACATTGCATCACTATGCCAGAGGATGACTCAGCGCAGGAACGTCCTGCTACACACACCTGATGCTAATGCATTACCTCCGGGACTCTCTTCTGAAGATGTACGATCTGTTTAAAGCAATCGGCGAGGCCCTCGGTAGATGTGACAGATGCAGAAATGGTGGAATAGGGAGGTCTGACAGTGTAATGATGCCATGTCAGTTTGGATGACATATCAAATAGCAGCACTTACCATTTTGTATTtgataaaatgttgaaaaagaGGCCGTGTTTACTTGAGGACAACATTTGAAAATATCgatgtattgtttaaaaaggacaaaaaaataatagaagtggCATGAATATCAAAAATCTAAacttgctgtgtgtttgtgatttaAAGGgtaaaacaactatgttgaaaACTGAAACACTGTCACCTGTGCAATGTATGAGTATACAaaagaatgacagtaaaaatgtaTGCAACTGTTATTACTATGGTTTTATGAATATACCTTTACATATCTGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82253 lncRNA upstream 8983 740691 ~ 740898 (+) True G60996
TU82239 lncRNA upstream 126446 616774 ~ 623435 (+) True G60983
TU82185 lncRNA upstream 191301 555151 ~ 558580 (+) False LOC103023024
TU82130 lncRNA upstream 279192 455836 ~ 470689 (+) True G60910
TU82123 lncRNA upstream 472559 277010 ~ 277322 (+) True G60903
TU82274 lncRNA downstream 19852 800649 ~ 800870 (+) True G61011
TU82283 lncRNA downstream 25768 806565 ~ 807029 (+) False G61014
TU82293 lncRNA downstream 26600 807397 ~ 809972 (+) False G61014
TU82305 lncRNA downstream 28080 808877 ~ 809972 (+) False G61014
TU82328 lncRNA downstream 53190 833987 ~ 835273 (+) True G61016
XM_007236107.3 mRNA upstream 128139 614113 ~ 621742 (+) True LOC103021355
XM_022671157.1 mRNA upstream 159776 586693 ~ 590105 (+) True LOC107197032
XM_007236110.3 mRNA upstream 175380 570221 ~ 574501 (+) True LOC103022716
XM_022671198.1 mRNA upstream 184571 559026 ~ 565310 (+) True LOC111192919
NM_001291262.1 mRNA upstream 192174 539518 ~ 557707 (+) True LOC103023024
XM_022671158.1 mRNA downstream 28437 809234 ~ 809997 (+) True LOC111192892
XM_022671159.1 mRNA downstream 112572 893369 ~ 912312 (+) True LOC111192895
XM_022671160.1 mRNA downstream 132094 912891 ~ 914305 (+) True LOC111192896
XM_022671162.1 mRNA downstream 138377 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 148813 929610 ~ 943921 (+) True LOC111192898
TU82226 other upstream 124872 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 148732 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 603198 144246 ~ 146683 (+) False mrps33
XR_002650173.1 other downstream 60240 841037 ~ 844690 (+) True LOC111192924
TU82289 other downstream 128965 909762 ~ 1014461 (+) True G61014
TU82298 other downstream 206961 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 207499 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 247000 1027797 ~ 1043316 (+) True G61013

Expression Profile