RNA id: XM_007241018.3


Basic Information

Item Value
RNA id XM_007241018.3
length 2588
RNA type mRNA
GC content 0.45
exon number 11
gene id mdm2
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26104757 ~ 26118299 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGCAGCCGGCCCACAGCAAGCTCCCACTTCCACTGAGCTCACTACAGCACTTTATGTACAGATGGAGAGTGTATAGTATATTAACtctaacttaaaatatatttattcagATTATAGATATGGCTACAGAGAGCTGTCTGAGTAGCTCCCAGATCAACAAGATTGACAATGAAAAACTGGTAAGACCAAAAGTGCAATTGCAAACCCTGTTAAAAGATGTAGGTGCAGACAAGGACGTCTTTACCATGAAGGAGGTGATGTTTTACCTGGGTAAGTACATCATGAGCAAGGAGCTTTACgacaagcagcagcagcacatcgTCCACTGCGGGAACGACGCACTCGGTGAAGTGCTGGGTGTGACCAGCTTTTCTGTCAAAGAACCACGTGCTTTATTTGCAATGATTTCGAAAAACCTCATAGCAGTGAAAAACCCagaGTCCCAGTCATCCTTAACAGAGCCCAGGAGTCGAACTGAACCAGACAGGGGGCAAGAGGAGACAAACTCTGATTCATCTACctcagtgcagcagcagcagcagcgcaggAGACGGAGAAGCAGTGATACtgCGAGTTTCTCTGTGGAGGAGGAAAGCAGCGAGCCCAGGAAGAGGCACAAGTCAGACAGCTTCTCCCTGACATTTGACGACAGCCTGTCGTGGTGCGTGATCGGAGGACTGCGCAGAGAGAGCGGGAGCAGCGAGTCTTCAGACTCACGCAGCATATCGGATGTAGGTATAGCTCGAAGTGAGGACAGTGAAGAAAGTGAGGATTCAGACTCTGATAACTTCAGTGTGGAGTTTGAGGTGGAGTCCATCGATTCGGATGCGTACAGCGAGAATGATGACGACTCTGTACCAGGGGAAGACGAGGTGTACGAGGTTACTATTTTTGCAGAAGATGAAGATTCCTTTGATGAAGATTTGGAGATCAGTGAGGCCGACTACTGGAAGTGCTCAGAGTGTGAAGAGCTGAACCCCCCGCTACCTCGACACTGCAAGAGCTGCTGGAAGGTACGGCCGGATTGGCTGCCAGAAAACGATTCATGTCTGGAGAACCCCAGCGATGAAACCCAAGCCAGTGCTGCAGCCGCTGACAGCACCTGCCTTGGTTTGACAGTCGGCTCCGCCTTAGAGTCCAAACCTCTGCCCTCAAATCCTCCCAGCCCCACCCCCGATTCTGATGAAGGAATGGACGTACCGGATGGCAAGGTTTCCCGGTCACTGAATGCCAGCAGAGACGAATCTAAGGCTGCCACAGCTGCTGCCACCGCCGCCGTCGCTTCTGGCCCAGACTCTCAGGGCCTGAGCCTGTCCTCCTCTCAGCCCTCCACTTCCTCCTCACAGGGTAACAACAGCCAGGAAGACACTCCCGAGCTGGAGCGCTTCAACAGCATGGAGGCCTGCCTCCCTGCCACCTGCCTGGAGCCCTGTGTCATCTGCCAGAGCCGGCCCAAGAACGGCTGCATCGTCCACGGCCGCACCGGACATCTTATGGCCTGCTACACCTGCGCCAAGAAGCTGAAGAACCGCAACAAGCTGTGTCCTGTTTGCCGGGAGCCCATTCAGTCTGTCGTGCTGACCTATGTGAGCTGATGGAggacaaaaacaaataataaaattacctCAATTTTTCTCACCCGCCTTATTCTAAAATACCCTTAAAGcaaatacaattaaaacatgAATGTTGTGTTAAATTATACAGTTTTCGTtggatttaaaatatttttgtggtAACAATTAATGGCATAAGAAttgtgtataaatattcatatatttctgtgtaaatataaatactttcAGTTAAACAATCTTTTGTaggtataataattattaatattattttagcgTGCAGTCCAGTTAAGATTGTACagataataatttatatttagtgAATATTTTTCATGTTAATCTAATCTTTATGTCCCGGCTTTAACGTTAAAACcacttcttttgttttttacgCACATACACCATTTGATtgactccactgatcatatacgacacattgtagttctataatttcAAACTGCctttctgcatattttattattctccttTTACTCTGGTGTTGTGCTTGTAAAACAGGCAcagtagtgctgctggagtttttaaacatcttaaaGTCCTGGTGGACTGAAAATAGGCCACCAACAGCGTTCAgtaacagtattttaaaaactgtctgTTCTGATTAGTGTCACTTCAGTGCTCAGAATAACCCGCCACCCAAATTATAGCTGCTGCTGTGTGCTTGTCTATCCTGTGAGGTCCTGTgtattgaagaacagagaaAAGGAGGATGATAGTaaagtatgcagaaaaacagatacaggacttgtctgtaattatagaactacaaaactgtatgatcagtggagctgaaaaaaaggCATGATGAGGTGAggaacaaggaggtggtcataatgttatgacagatttttgtgttattttttgatGCTCTGAAGTACTGAAGTTATTAAATGCCTCTGATGTTCTCTTTTGCACTGTTGTGCTGCACAGACTGCTACTCACTCCTTAATGTCTCTACGTTTGCTGGAATAAATGACTGATtgcttatgta

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0010165 response to X-ray biological_process
GO:0044238 primary metabolic process biological_process
GO:0071157 negative regulation of cell cycle arrest biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0031981 nuclear lumen cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K06643 MDM2; E3 ubiquitin-protein ligase Mdm2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650159.1 lncRNA upstream 14267 26092200 ~ 26093105 (+) True LOC111192883
TU90302 lncRNA upstream 14272 26092208 ~ 26093100 (+) False LOC111192883
TU90172 lncRNA upstream 36217 26025980 ~ 26071155 (+) True G66844
TU90186 lncRNA upstream 336611 25737387 ~ 25770761 (+) True G66854
TU90183 lncRNA upstream 391134 25715976 ~ 25716238 (+) True G66851
TU90326 lncRNA downstream 35116 26153415 ~ 26153644 (+) True G66982
TU90331 lncRNA downstream 79122 26197421 ~ 26198071 (+) True G66987
TU90335 lncRNA downstream 79122 26197421 ~ 26197718 (+) False G66987
TU90382 lncRNA downstream 338756 26457055 ~ 26461093 (+) True G67028
TU90415 lncRNA downstream 678173 26796472 ~ 26797829 (+) True G67059
XM_022671188.1 mRNA upstream 15253 26080452 ~ 26092119 (+) True LOC111192916
XM_007235706.2 mRNA upstream 26241 26072585 ~ 26081131 (+) True slc35e3
XM_015602020.2 mRNA upstream 37980 26043247 ~ 26069392 (+) True nup107
XM_022671572.1 mRNA upstream 82855 25704277 ~ 26024517 (+) False LOC103027045
XM_007235090.3 mRNA downstream 1842418 27960717 ~ 27981189 (+) True LOC103045890
XM_007235084.3 mRNA downstream 1907578 28025877 ~ 28031998 (+) False tmem138
XM_007235085.3 mRNA downstream 1907616 28025915 ~ 28031998 (+) True tmem138
NM_001292010.1 mRNA downstream 2089227 28207526 ~ 28219011 (+) False oaz2
XM_007235066.3 mRNA downstream 2235763 28354062 ~ 28457012 (+) True ptn
TU90292 other upstream 15283 26089832 ~ 26092089 (+) False LOC111192916
TU89825 other upstream 1422792 24645726 ~ 24684580 (+) False lingo1
TU89793 other upstream 1581320 24518622 ~ 24526052 (+) True osgep
XR_002650202.1 other upstream 1724350 24368373 ~ 24383022 (+) True rpap3
XR_002650161.1 other downstream 1378496 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 3438837 29557136 ~ 29558666 (+) True G67459
TU90953 other downstream 3467677 29585976 ~ 29592287 (+) True G67453
TU91186 other downstream 4169505 30287804 ~ 30288744 (+) False LOC111193014
TU91317 other downstream 4480302 30598601 ~ 30600595 (+) True G67690

Expression Profile