RNA id: XM_022671419.1



Basic Information


Item Value
RNA id XM_022671419.1
length 2032
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC103028209
representative False

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18567677 ~ 18575169 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TGAAACTCAGGCAGCTCTGCGCTCTGATAGGCTGCTGGAGGTTCCATATAAGAGAGGTAGAGGCTGTGATTTTTATCTGTTTCGTGCTGCAGAGATTTGGAAAGATGACGCGGTGCAGATCTTTATTTGCCATCGTTTGGCCTCTTCTGTTTCTCCAGGTCTCTGCACAGAGCTGGAGTATATTTGGCGTCCAGCCGAAGGGGGCGCCGCAGGAGGGCGGAGTCAGGCTGGTGGGGAGCGTGCCCACCGCGGGCCGGGTGGAGGTGTACCACAGCGGGCAGTGGGGCACGGTGTGTGATGATAATTGGGAGATGGCCCAGGCTCAGGTGGTGTGTCGCCAGCTGGGGTTCCCTGGCGCTGTCTCCGCCTCCGTGGGCGGAGTCAATGGGGAAGGTTCTGGACCAATCTGGCTGGATGATGTAACCTGCACAGGATCTGAAAGCTCATTGGCCAGTTGTCGCTTTAAAGGGTGGGGTATAACCGACTGTTCCCACAAAGAGGATGCAGGAGTGATCTGTGAGAGCGgCAGTAGTGTGGACGATGATCAGAAGTTTTCACTGGACCACAGCGTCGGACTCTCTGAAGATCTCGGTTCCCTCTTCGATCAGGCGGAAAACTGCGATGTCGACGTTCTGGTCGTTGATTCCAGTGATGATCAAAGTCATGGGAAAACATTCTGCGTCCACAGAGTGATCCTCTCTCTTTACCCCCAGCTAAACATCTCAGAATCCACCAGAAACATCTCTGTAGACATCAGCCAGACCTGCCATCATCACGTCTACAGCTTCTTCAGgtaTTTCTACACACGTAAGCTGGACGTCACCCTGGCTTCAGCCCAGTGCCAGCACCAGTTATCCTACATGTTTGGGATGGAGCATCTTCTGGAGGAAGTCGGCAAGGTCTTCACTCTGCTGCTTCCTCAGGACAAGACCTTCCGCACTCAGGTGTCCCTGTACGAGTACGGCATCCGCACCGAAGACCTGCTGCTGCAGGAGAACGTCCTGCAGTACCTGTCCTGGAACTTCGAGTCGTTCGTCAGCTCTCCAGCCTGGAAGACCATCACCGTACACATGATGGAAGCTCTGCTGTCTCGCTCGGACCTGGTGGTGGAGGACGAGGCGTTTCTTCTGGAGACTCTGGAGAACTGGCTGGAGCAGAGGACGGACGTGACCTCACCCAAACGCCTAATCAGCCTCCTGAATCAGATCCGCTTCTGCATGATCCCAGTGGAAAAGCTCTACGACTTCCAGTTCACCTCGTCTTTGTACCAGAGCAACGAAGAGTACTTCAGTAGCGCCATTTTGAGAGCCTTCCAGTTCAACAGCCTTCCGTTCTCAAAGATCAGGAAGCATTTCAACGACTCCGACAGTTACCTGCCCAGAATCTACACCTCCAGCAACTGGAGTCTGGTCCTCAATTCCACTTCCACACGAAACAACATGTACAACCAGTATCGCCACAACTACTACTCCAATCCCGAAAGGCAGGGATCGTTCTCCACTCCAGCCCACAACAGTGTTCTCTACAATCAGAAGATCCTCCAGTGGCAGGCGCAGGTTCTCCTCTACAGCTGGGAATGCTCCAACCAAGGCTTCACCTGTGAATCTCTACCAATGGCCAGGCTCATTACCTACGACCGCTCCTACCAAAGTACCATTCGCTTCAGCAACAAGCTAATTCTCACCTGCAAGACTGAGAACACCGTCTTTCACGTCCAAGACTTCAAAAACGACAAGGCAGCCATTCCCAGCAACGGCACCATGAGTCTACCCAACCCCTGCCCTGATAACTACTTCTACACCTTCGTGGTGCGTCCGGAGTTCATCTGAAAGCATCCTTAAgtgatgaaactggcactcatcaggaccgcaccAGAAAAGGAAGACAAGAGATTCCCATAACCAAATGTGTGCTTTATGTGTGCTAAGCTATGTGGAGATCAGAACATGTTTctcttttaaaggagaactctggtggaAAAAGgatttttgttgtagtaaaacataataaaaagttcttacgccgtttttac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87826 lncRNA downstream 7129 18560128 ~ 18560548 (-) True G65067
TU87825 lncRNA downstream 7129 18560203 ~ 18560548 (-) False G65067
TU87675 lncRNA downstream 121910 18444626 ~ 18445767 (-) True G64959
TU87661 lncRNA downstream 239217 18327721 ~ 18328460 (-) True G64948
TU87646 lncRNA downstream 337194 18199063 ~ 18230483 (-) True G64936
TU87830 lncRNA upstream 6439 18581608 ~ 18582016 (-) True G65069
TU87823 lncRNA upstream 44542 18619711 ~ 18623603 (-) True G65066
TU87810 lncRNA upstream 49706 18624875 ~ 18712520 (-) True LOC111192976
TU87811 lncRNA upstream 129971 18705140 ~ 18709436 (-) False G65064
TU87812 lncRNA upstream 129971 18705140 ~ 18709436 (-) False G65064
XM_022671440.1 mRNA downstream 16704 18538903 ~ 18550973 (-) True LOC103028836
XM_022671182.1 mRNA downstream 30934 18489652 ~ 18536743 (-) True LOC103034879
XM_007243061.3 mRNA downstream 211182 18353333 ~ 18356495 (-) False LOC103047157
XM_007243060.3 mRNA downstream 211182 18353333 ~ 18356495 (-) True LOC103047157
XM_022671454.1 mRNA downstream 646866 17884620 ~ 17920811 (-) True hid1
XM_022671433.1 mRNA upstream 11400 18586569 ~ 18590070 (-) True tspan10
XM_022671447.1 mRNA upstream 49906 18625075 ~ 18629969 (-) False LOC111192976
XM_022671445.1 mRNA upstream 49906 18625075 ~ 18629969 (-) False LOC111192976
XM_022671446.1 mRNA upstream 52609 18627778 ~ 18629969 (-) False LOC111192976
XM_022671444.1 mRNA upstream 52609 18627778 ~ 18629969 (-) False LOC111192976
TU87588 other downstream 636507 17928507 ~ 17931170 (-) True G64886
TU87274 other downstream 970132 17586845 ~ 17597545 (-) False LOC111192911
TU87843 other upstream 68202 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 323016 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 323016 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 705133 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 1025045 19600214 ~ 19605682 (-) False ndufb2

Expression Profile