RNA id: XM_007242882.2


Basic Information

Item Value
RNA id XM_007242882.2
length 1543
RNA type mRNA
GC content 0.53
exon number 1
gene id amn
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17804284 ~ 17805826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTTACTCTGATTTACTGACCAACCAAAGTTCACTCTGCTCACTTTCTACCGCTGTTCCTTCCCTCGTCAGGATGCCGACCGCACCGGCTCTCgttcctctgtttctctgtgttctcGGATCTGTTGGGGGCGTCTACAAGCAGTGGATCCCTGACACCAACTTCGAGAACGCGACGAACTGGGATAAAGGTTCTGTTCCGTGTGGGAGCGACCAGGCGGTGTTCCCGGCTCAGGGTAAAGTGGCGGTCTACGTGGGATTGGTTCATACGCTGGCTGGGTTGAGTCTACCGGTGGACGGGGAGTTCGTTCTCGCGCCAGGAGCCGGGTTTTCCATAAGAGTGGGTCAAGACCCTGGTTGTGGAGCTGGTGGTACCACCCAGTTTAAAGACGTTGAGTCGCTAAAGTGGTTCGATCCAGATCTTTGGAGCGCCGCTTCATCGGTAGACGACTTCCAGAAAGGTTCGTACCTTTTCTTTGTGCATGAGGAGAGCGTGCCGTGTCAATACGATGATGTCTTGTTTCGAGATGCTTCttcattccgtgttgatgtatcAGGGAACACCAATACCGTTCCCGTCAAGAGCGTTAAAGTTCTTGGACAACGGTTTGAAAGCAACTCGGAATTCTCCCAGTATTTGACATCCAGTCTTGGAAAACTCCAATTCCATGGATCTTCCTCCATCAAAGTTGAAGGATCAAGCTGCACAGATGTTACCGGCTGCGAATGCGGAAACTCCGCCAACCACGAACGGATCTGCGCCAACGTAGCATGTTCACAGCAGCTGGACTGCAAGAAACCCCTTCGCCCAGTTGGGCACTGTTGCGACGTTTGCGGCACCATCATGGACATTCAATTCTCCGGCAGCTTCAACCTGGACTCGTACCGCCAACGCCTGCAGCACCTCTTCCTCGCTCTACCGAAGTACAAATCCGTTCAACTGGCGGCGTCAAAGGTGTCGAAAACACAGAAGATGCTGGGAATAatcccgtatcaatcaacccaCGAGATCCAGGTGGTCCTGTTGGACCAGAACACGGGTTCTGAGGCTGGCATGTTATCCGAAGCTCTCGCTCGAGACATTCTGAAGGACGTCCACGACCAAGGCGCCCACCTGGGCATCGAGAGCGCAGACTTCCGTGCCTCTTCAGGCGCCACTGGCAGCGATGTTTCTGGCCTGGGCGATGGAGACGTGGCTGGGATTGTTCTGGGTGTTCTAGCCTTGGTGGTGTTCTCAGTCCTGCTGGTGGTGGCCTACAGGAAAGGTCTGCTGCCCAGGATGCCACGTTTACCACGTCTGCCGTCGTTCAGCAGCTGGAAGAAGGACAGTGGAGAGGTGGGAGAACTCGGAGGACCCATAGACCACGGATTTGATAACCCCATGTTCGAGAAGCCGCACGCCTTGCCGGAAATCTCTGGACTGTACGGAGCAGAGAGTCTGAACGGCATTACCTTAACTCACTCAGGTGTTCACTTTGTCAATCCTGTGTATGATGAAACTGATTTCAGtgcatgaaattaaatgtacaaGCAATGACAGATA

Function

GO: NA

KEGG:

id description
K18259 AMN; protein amnionless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87329 lncRNA upstream 84372 17716918 ~ 17719912 (+) True G64698
TU87330 lncRNA upstream 84856 17717468 ~ 17719428 (+) False G64698
TU87324 lncRNA upstream 89109 17690209 ~ 17715175 (+) False G64698
TU87170 lncRNA upstream 125842 17677928 ~ 17678442 (+) True G64595
TU87161 lncRNA upstream 130123 17622861 ~ 17674161 (+) True G64586
TU87407 lncRNA downstream 151787 17957613 ~ 18008671 (+) True G64753
TU87408 lncRNA downstream 166753 17972579 ~ 18061330 (+) True G64754
TU87425 lncRNA downstream 193549 17999375 ~ 18000064 (+) True G64760
TU87429 lncRNA downstream 201328 18007154 ~ 18008138 (+) True G64763
TU87430 lncRNA downstream 206655 18012481 ~ 18348193 (+) True G64764
XM_022671427.1 mRNA upstream 23692 17768928 ~ 17780592 (+) True LOC111192968
XM_022671434.1 mRNA upstream 40163 17748628 ~ 17764121 (+) True LOC111192970
XM_022671428.1 mRNA upstream 58511 17732094 ~ 17745773 (+) True LOC107197389
XM_022671429.1 mRNA upstream 58511 17732094 ~ 17745773 (+) False LOC107197389
XM_022671453.1 mRNA upstream 84426 17707970 ~ 17719858 (+) True LOC111192980
XM_022671418.1 mRNA downstream 54391 17860217 ~ 17879272 (+) True otop2
XM_022671451.1 mRNA downstream 118520 17924346 ~ 17929849 (+) True LOC111192979
XM_022671181.1 mRNA downstream 179139 17984965 ~ 18132010 (+) True LOC103040205
XM_022671423.1 mRNA downstream 355246 18161072 ~ 18172237 (+) True LOC103030006
XM_022671422.1 mRNA downstream 370401 18176227 ~ 18193170 (+) True LOC107197388
TU87328 other upstream 84856 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 916089 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 928343 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 939830 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1050724 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 814034 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1470976 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1474474 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1974837 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3151309 20957135 ~ 20957635 (+) True G65565

Expression Profile