RNA id: XM_007245020.3


Basic Information

Item Value
RNA id XM_007245020.3
length 4787
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC103045633
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15422001 ~ 15426787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCAAAACGTGCTgggggggtaaaaaaaaaaataaataaatacatcgtAAGCTGTTGCTGCTGCACACAGCAATGGAAGCAGGACTAAGGCAGGACCAGCAGGGttaaaaggagaagaaaaagggaaaaaaagaaacgcGAGAGCGAGAAAGAACGCTGTTGCCGTGGGGACGTACTTCTCCCTCCCAGCGCTCATCCGGCAGCAGCTCAAGTCGGGGGCTGTGGGTCTGAGCTCCCCAACGCTGCTCTCAGCTCAGGACACCGCAGGGGCTCTAGCTTCGCGCTATACGGATACTTTTCAGATCGACGCTACGTCACAGGAGGGGAGGAGAAGTGCGctctctcgcttgctctctcactcttactctcatTCCagggaacgagagagagagagggagagagagcaagcgcaaaagagagagagagcacgagcgTGCGAGCGAGCAAGCGCAAGAGTGTGCTCGAAAGCAGGAGAGAGCTTTCTCCACCAAGCAAGCCTTATTGGGCTCGTGCTGCCAGCAGTACCTTCCTTCGGACTCGCCGATTCCCTTTTCAAAAGAAAGTGACGGATTACCAGGAAGACTGCGGGAGGCAGATTGCTGCCGCTACCATTTGTGAATCTGCCGAGCTGGAGAGCGGAACTAGTTAAGGAAAGAAGCAACCCAGTGACTGCAGTGTCTCACACAGCCTTTTAAACTGACCGAGGCACAGAGGCAAATCAAGCAGACAAGGGACAAGCCTTGACAGAAGGAGGACAGCAACTGGGAAAGTGAGTGGAAAAGACTCTTAGGGGATTcaggcttttctttttttctttttttctttttaaaacaaaaggaTAGAGAAGCATCTGAAAAGACTGAGGAATTCTGATTCTTCTCTCCCCCCCCTTTTCCCCCCAAACCCTCCTCCTTTTCACCCTCTGCCTTGGTTTAGCGCATTTAGGCATTATACTATTATGGAGACTCAGAAAAGGCATTTAACAGCGGCTTCAAGCGGCAGTTTCCAAGGACATGCTTCTGCGGATGAGGTGACAGCGAACGACGGAGCACGTCTCTGGGAACAAAACTGGAATGTTATCATTGCCTAAAGCTCTGTGGGCCTGCAGCTTTTCTTTGGATGCTCTTCTTTGGATTTATTAGGGGCCATTTTGGTGTTCTTTTTCCTTTCaacaataaactaaattaaaaggcATTCCTTTTCACTGGGATATATGAAtctttgaaaaaaagaaaaaaaaaaaaaagaaacagaaaaagggagaaaataGCAGCATCTGTGATTGTGATTGCAAAAAAAGGACCTGTAAAACCACTGAGGTAGGTGTCTGGCCTTTCCAaagctttatatataaaaagtctGCCCTATTCTCGTTCATTACTCCTTGGCTTTTTTTTCTACCCATCCCCGTTGCTCTCGCACTTTGTTAATGAAGATGGCCCCACTAGTTCAGTAAATGGAAAAACAAGCTAGAGTGTTGCTTAACCCAGGGTAGGGACAGTTTTCTTTAAACTAGCACCAAACCCCTCCCCTCATTCCCCTTTCCACCTCCTCCTTTCTTCCCAATCACTACCGTCACCCCAAAGCCCACCCCCCATCCCTTCCCCCGCCCCCCAGACGATGCTGAATTATGAACGTGCCACATCATGAGTCTCCTGGGGCGGGTAGCTGTGCGTCGAGCCAGGAAAACCGCCCTGCTCTGTGTCGTCTTCCTCATGGTGCAAGTGTGCGTGGAGGTGGCGGCAGGAGCGGCGGGTCCCCAAGGCTGCCCGCCCGTCTGCTCCTGCAGTAACCAGCTCAGCAAGGTGGTGTGCACCCGCCGCGGTCTCACCCGCGTGCCCCCTGGCATCCCCACAAACACAAGGCACCTCAACCTGATGGAGAACGGCATCGAGGCAGTGGAGGCCGACTCCTTTCGACATCTCCACCACCTGGAGGTGCTTCAGCTGGGGCGCAATGCCATCCGACAGATCGAGGTAGGAGCCTTCAATGGCCTTACCAGCTTGAACACCCTGGAGCTCTTCGATAACCGGCTGACAGTAGTGCCTAGCGGCGCTTTTGAGTATCTGTCAAAGCTGAGGGAACTGTGGCTGAGAAACAACCCCATCGAGAGCATACCTTCTTATGCCTTCAACCGAGTGCCCTCTCTCATGCGTCTGGACCTAGGTGAGCTGAGAAAGCTTGAGTACATCTCTGAAGGGGCCTTTGAGGGTTTGGTCAACCTCAAGTACCTCAACTTAGGCATGTGCAACATCCGAGGAGAGATGCCCAACCTGAACCCGCTGCTAGCACTAGAGGAGCTGGAGATCTCAGAGAACTTCTTCCCTGAGATCAAACCCAGCTCTTTCAAAGGACTGACATCCCTTAAAAAGCTATGGATCATGAACTCTAAAATAGGGCTAATTGAACGCAATGCATTCGATGACCTGTCCTCTCTGGTGGAGCTAAACCTAGCCCACAACAATCTGAGTTCTCTGCCCCATGAGTTGTTTGCCCCTTTGAAGTTCTTGGTGGAACTACACCTCCACCACAACCCTTGGAACTGCGGCTGCGATTCATTGTGGCTAGCACGGTGGCTGCGTGACTACATCCCAACCAACTCGACCTGCTGCGGCAGATGTCATTCTCCAGCACACATGAGAGGTCGTCAGATGGTGGAGGTGGACAGAGGTGACACCGGTGCAATGCAGTGCTCTGCCCCCTTCATTGCAGATGCCCCAAGAGACCTCAATATTTCAGCAGAACGGGTAGCAGAGCTGCGATGTCGAACGGCGTCAATGTCGTCAGTGCGGTGGCTCCTACCAAATGGCACTATACTGACACATGCATCCAGTCATCCAAGGATAACCGTGCTCAATGATGGAACTCTAAACTTTTCGAACGTGCTTGTGGCCGACACAGGCATGTACACTTGCATGGTGTCCAACGCAGCAGGAAAATCCAATGCTTCGGCTTACTTAAATGTGAGCGCAGCTGAACTCAACACATCCAACCTCAGCTACTTCACTACTGTCACAGTGGAAGTGCTGGGACCGACATCTGAGCTGCCAAAAACCAAGACCACAACAACCACACCAGGTGCAAGTACAACGACCACAGcttctccctctgtctttcaACCGGTTTTCATCTCAACACCAACAGTACTTCTCCAAAGCACTGACATACCACCAAGTCGGCCGCCTGCAGTGCCAGCTTCAAAAGTTACAACAGGGAAACCTCCCAATCCAGCCAGCACCAGCCTGGACGAGGTCATGAAGACAACAAAGATCATCATTGGCTGTTTTGTGGCAGTGACACTGCTAGCAGCAATCATGCTAATAGTGTTCTACAAACTGAGGAAGCGGCATCAACAAAGGAGCACCGTGGCTGCAGCCAGGACTGTGGAGATCATTCCTGTGGATGAGGACCTACCACCACCTGCATCTGCTGCCAGTATACGAGGGGAGGGAGCACTAACACTACCAGAGATTAGGGACCATAACAGTATTCACAAGTTGGACTACATCACCCACAAATCAGACTACAGCTACCATAAACCCAAAATGGATTACAGCACTCACAAACCCAAGTCAGATTACAGCATCCACAAACCCAAACCTGACTTTAGCACTTATAAACCGAAATCGGACTACTGCATCCAGATTCCCAAGACAGACTACATTACACACAAGCCAAAAGAGGATTACAACACTTACAAACCACAAGTGGACTACAGCCCTCACAAACCATCCCCAGACTTCACTCACAGATCATTGCCTGATTATCACATTAAAAAGCCAGAGCAAAGTCCGTACAAACCTGGATATAACACCCACAAGCCTGATTACAAATCTCAAACAGTCAGACCAGACTTCAGCCCTTTCAAACCAGATTACAGCATTCACAAACCCAAAACAGACTATAGCACGCACAAAGCCAAAACCAATTACATTCCCCACAAAGCTGCCACCAACTACAGTCCCTTCAAGATGGATTGCAGTCCCTTCAAACCGGACTACAGTGCATTTAAGGCAGACTACAGCCCACTCAAAGCTGAATACATCAGCCACAAACCAGACTTTAGCCCCCACAAGTCTAAAATGGATTACAGTCCTCACAAAGAGGACTACAGCCCCCATAAGCTCAACTATAGCACCCTAAAGCCCAAGTACAACACCTACAAGCCTGGAGGACATGCAGCTAAATGGACAGAAAGCAACAGCATTGGAAACTCTCTTCCTCGAACCTTGCCCAGTACCATCACCACTATCTCAGAGCCCTTCGTCATGAAAACACATGCGAAGGAGAAAGTACAAGAGACTCAAATCTAGCCCTCGACAACCTGCTCCCAAAAGAGAAATTGTGGCCAAATCACGGCCAGAAATATATCCCTAATCCCCTTAAAACACTCCCAAGACACCCAATGAAAACATGCAATAGAATgcacaaagagagaaaaaaaaaaaaagactgttcttttttttttgtacagcgTGCAAATCCTAGAGACTGATTTCTTGATGTAcatgcttataaataaataaataaatatatatatatggagagaaaaaaaaaatcagaaaaactatCATGGGCTGTCATAGAGAAGcagattatattaaaaataaattaaactattttCTAACTTGTAACTTCTATTTAAAAAGACAAGTTGTTTAAAGATGCTGTcctgactttaagaaatgagggTAGTGTTTTCAAAGGGCATTCTGTGTGATTTCTAAACCATGCTACAGAGAATGCagtgaaaagaagaaaaaaagaaaagaaaaaaaaacattta

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86506 lncRNA upstream 232032 15147026 ~ 15189969 (+) True G64087
TU86507 lncRNA upstream 268740 15147026 ~ 15153261 (+) False G64087
TU86512 lncRNA upstream 298780 15123011 ~ 15123221 (+) True G64091
TU86509 lncRNA upstream 330808 15090971 ~ 15091193 (+) True G64088
TU86503 lncRNA upstream 349202 15072539 ~ 15072799 (+) True G64086
TU86571 lncRNA downstream 199789 15626576 ~ 15629978 (+) True G64141
TU86574 lncRNA downstream 238381 15665168 ~ 15672932 (+) True G64144
TU86596 lncRNA downstream 318294 15745081 ~ 15749573 (+) True G64159
TU86656 lncRNA downstream 529222 15956009 ~ 15956216 (+) True G64205
TU86700 lncRNA downstream 717498 16144285 ~ 16144718 (+) True G64233
XM_022671175.1 mRNA upstream 421419 14997118 ~ 15000582 (+) True fam200b
XM_022671389.1 mRNA upstream 694646 14721032 ~ 14727355 (+) True LOC111192957
XM_022671390.1 mRNA upstream 694646 14722914 ~ 14727355 (+) False LOC111192957
XM_007234986.3 mRNA upstream 1179767 14219485 ~ 14242234 (+) False gata3
XM_022671152.1 mRNA downstream 137230 15564017 ~ 15571205 (+) True LOC111192874
XM_022671394.1 mRNA downstream 477555 15904342 ~ 15923062 (+) True ccdc87
XM_007245047.3 mRNA downstream 477555 15904342 ~ 15923062 (+) False ccdc87
XM_022671395.1 mRNA downstream 477555 15904342 ~ 15923062 (+) False ccdc87
XM_022671396.1 mRNA downstream 477555 15904342 ~ 15922250 (+) False ccdc87
TU86374 other upstream 676919 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 2260681 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 2762483 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 2953099 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 5771914 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 995447 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 1012433 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 1326256 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 1406509 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 1437731 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile