RNA id: XM_007245023.3


Basic Information

Item Value
RNA id XM_007245023.3
length 3780
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC103046856
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16112859 ~ 16141399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagagagagagagagagagagagagagagagagagagagacagagagagagaccggcCGGCGATTAAACCCTCGCTGCAGGGCCGTGTGATGAGTGGGGGCTTCACCATGGCGGCTCTAGTGGTGCTGTTGTCAGTCCTCTGCTCTTTGCTGTTATCAGCTGATGCAATCAAGCCCAGGTTCTTTGAGCCCAGAATCTTTGACAAGGAGGCCACAGGGTTTGGGCCCATATTTGAAGAGGAGCCCCTGGACACAGTGTACGCTGAAGATTCACCTGAAGCCAAAATCTCCATGAACTGCAGAGTGCGCGCCAATCCACCAGCCAACATCAAGTGGTGGCATAATAACTGGGAGATAAAGCTGTTGGAGCAGCCAGATGAGCACTACAGTTTAGTGGGAGGAAACCTGGTCATCACTAACCCTGATAAGAGCAAGCATGCTGGGAAATATGTCTGTGTGGCCAAGAACATTTATGGCACCACCATCAGCAAAGAGGCTACTGTCAAATTTGGATATCTGGACCAGTTTCCTACTGATGAAAGGGAGGCTGTGTATGTTAAAGAAGGACAGGGGGCTGTTCTACTTTGTGCCCCGCCCTCTCGCTATCCAGCTGAGGTGATGTACCGATGGATCTATAATGATTTCCCCAATTTTATCATCCCTGACCAGAGGCGCTTTGTGTCTCAGACCACTGGAAACCTCTACATTGCTAAAGTCGAGGCTTCCGATATCGGCAACTACTCCTGCTTTGTGTCCAGCCCCACCATTGGCAAGAGTGTCTTCAGTACCCCCATTCCTCTGGTGCCACAGGTAGAGAAGGAAGTAAAGCGATATCCTGCAGACATCCGCGTCAGATTTCCTAAGACGTATGCGCTGGTGGCGCAGAATGTTACACTTGAGTGCTTTGCCCTGGGAAATCCGCTCCCACACATCCGCTGGAGAAAGCTGGATGCAGACCTGCCACCCAACTACGAGGTCAGCATGAATGGAGCACTGCTGCACCTTATCAATGTGCAGTATGAAGACGAGGGCAGCTATGAGTGTGAGGCCCTTAACGTCAGAGGCATGGACTGGTACCGCCAGTGGCTTTATGTGGAGGGTGCTCCAGAGTGGGCGGAGCACATTAACGACACTGAGAAAGATGTCGGCAGTGAGCTTACACTATCATGCACTGCTGTGGGAAAGCCGTTACCATGGATACGGTGGTTGAAGGATGGTTACTCAtaCGGAAAAGGAGAGCTAAAGTTCTCCAGTCTCACATTTGAAGATTCTGGCATGTATCAGTGCATTGCTGAGAACACCTGGGGAACCATTTACGCCAGTGCAGAACTACGAGTGGTCTCTTGTGCACCTACGTTTATATACAATCCGGTGAAGAAAATTCTACTGGGGGCTGAAAATGGCCGTGTGGTCATTGAGTGTAAACCGAGAGCAGCTCCTAAACCCAGGTTTATTTGGAAACGTGGCTCTGAACTGCTGTCTAATTCATCTCGTATGCTTATCTGGGATGACGGAAGTCTCGAGATCTTAAATGTGACAAAGAGCGATGAGGGCGCATACACATGTTATGCTGAGAACGACCGCGGCAAGTCTAACAGCACAGGAACCCTCAGCATCACTGAGGCTACTAAGATCACAGAAGCCCCTTCAGATGTGGAGGTCACAGTGGGCGAGTCGACCGTGCTTCAGTGCTCGGCTTCATACGACCCCAGTCTAGACATCACTTTCATCTGGATAGTGAATTCTTACATCATCAACTTCGACATTGACTTTGAGCACTATGAACTGATGTTGGGTGAAGAGAACAGTGGAAACCTGCTGATTAAAAACATTCAGGTCGCCCATGCGGGGGAGTACTCTTGCACAGCACAGACCATCGTTGACAATGTCACTGCATCTGCAAACATTTTCGTCATAGGTAGGCCAGGTCCTCCAGGTGGTGTGCGTGTGGAGGAAATCAAAGACACGTCAGTAAAACTGGTGTGGAGTCTGGGATCGGATCATGGCAGCCCTCTAATTCAGCATGTGGTACAAACAAGAGACTTCTACGCTCTGGACCCAGAGGATTGGAAGACTGCAGTCACCTCTCCTGTTTTCTTGGATGGGAAAGCCGAGGCTGCAGAAATCCTTGATCTGTATCCGTGGATGGAGTATGAATTTCGTGTGTATGCTATCAACGAGCTGGGGCCAGGGCATAGCAGCCTGCCCTCCATTAAAATCAAAACCTGGGATGCCATTCCTACCATGGCTCCCACTGATGTAGATGGCTATATGAGCTTAAATGGGGAGCTTATCGTCACCTGGACTCCAGTGAAGCCCCAATACTTCTTCGGTAAAAAGTTTGGCTATGTAGTATTTTTCAAACCCCACGAGGACAAAGAGTGGAAGTGGTCGACTGTTGCAGACCCCGAGTCCAGACGTTACGTATACAAGGATAACATCATCCCCAACACTGAAATCCAGGTCAAAGTGAAGAGCTACAATATCAAAGGAGAGGGACCGTACAGCCTGACCAAAGTGGTGTTCTCATCTGAGAGCGCACCCACTGAGGCACCTCTGGATGTGTATGCCCGTCAGGTCACCTCTACAGAAGCTCTGGTATGGTGGGTACCTGTCTATCAAGTTCCTCCACACTGGGTGGATGGCTATCAGGTTCGATACTGGAGAAAATACGACGACAACGAGGCTGCAGCGTCCCGCGTTCTGGTGCACGGTTCTGTCAACCAAACTCGTCTGGAGAACATGCGGACAGACTCGCATTATTTAATAGAGGTGCGGGCCTACAATGGAGCTGGACTCGGTCCACCCAGTGAGCACTGCGAGATGTTCACCAGAAGACCACCTCCAAGTCGCCGTCTCAGAGTGTACAAGTACGTCAGCTTTACACGCAAATGGCTGTACATCTACTGGGACCATATCTACAACTACTGGAATGAGTCTTATGTAGAGGgttacaagATCTTGTTTAGGAAGGAAGGAGAGCGTTATGGGAAACTGTACACCACCGGCAGGCACTACATCGACTTCCCTATGCCTGAGACAGGTGATTATCTGGTGGAGATCCGGGCTCGCTGTGAGGGAGGAGACGGCCCTATATCTCAGATACGAGTGCAAGGTCGAGCTGCATTGGGCCCTCAGTCTCTCTGTGCtgtctctctgctgctgctggtgttgtCCTGGATGAACCTTGGCCTGTAGTGAGGCCATTCTTTACCCACCTGGGTCAAATGGACTGTATAATCTAAAACCACTACCCCACTGTTCTGCAAATGGAGGTGCGATTTGTTTGGTTCGCCTTATGAAATTTCATCCACCATTCACCTCAAATTCTTTACAGGCTTACAGGTTTGAGATGATGATATATTCTTCAACATGGAAATTTAAAGAACTTTATGGAAATGTAAAGAACTTTACCCTGTCGTCAATGCTTTAGCTGCTTAAACAGCCATTTAAGTTgtagttttctgtttttcttataAGAATGTGTAAATGCAAGGTAATTGCAGGGAGTAAAGGTTTTCCTCTATTAGGTAATTGGCTCTAGTTCAGATACCTTGACATTGTGTGAACACAGATGCTATATTTTTGGCTGCACATGCTGCTAGGTAGACTACACATTAGAGACTATGCTACTCACCACATCACACTTTTGTCCATGCAGTTCTAGTTTTGAAAGTGCAATTTTCTTCATGTCACACTTAAATAAGATGATGTATTAAAATCCATGCAGCACAACCTGTATAAAGCTCCTCATTAAAGTTTGTATTCAGAACGAAAGAAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86656 lncRNA upstream 156732 15956009 ~ 15956216 (+) True G64205
TU86596 lncRNA upstream 363375 15745081 ~ 15749573 (+) True G64159
TU86574 lncRNA upstream 440016 15665168 ~ 15672932 (+) True G64144
TU86571 lncRNA upstream 482970 15626576 ~ 15629978 (+) True G64141
TU86507 lncRNA upstream 959687 15147026 ~ 15153261 (+) False G64087
TU86700 lncRNA downstream 2886 16144285 ~ 16144718 (+) True G64233
TU86704 lncRNA downstream 8369 16149768 ~ 16149974 (+) True G64237
TU86750 lncRNA downstream 25665 16167064 ~ 16167378 (+) True G64279
TU86767 lncRNA downstream 219504 16360903 ~ 16368394 (+) True G64292
TU86766 lncRNA downstream 236261 16377660 ~ 16432412 (+) True G64291
XM_022671398.1 mRNA upstream 11424 15998201 ~ 16101524 (+) True LOC103027800
XM_007245022.3 mRNA upstream 159016 15923726 ~ 15953932 (+) True LOC103046551
XM_022671395.1 mRNA upstream 189886 15904342 ~ 15923062 (+) False ccdc87
XM_015604721.2 mRNA downstream 77429 16218828 ~ 16314999 (+) True LOC103047366
XM_015602656.2 mRNA downstream 253927 16395326 ~ 16426623 (+) False arid2
XM_007237948.3 mRNA downstream 253928 16395327 ~ 16426623 (+) True arid2
XM_007237950.3 mRNA downstream 253928 16395327 ~ 16426623 (+) False arid2
XM_007237949.3 mRNA downstream 253929 16395328 ~ 16426623 (+) False arid2
TU86374 other upstream 1367866 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 2951628 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3453430 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 3644046 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 6462861 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 280835 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 297821 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 611644 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 691897 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 723119 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile