RNA id: XM_022671397.1


Basic Information

Item Value
RNA id XM_022671397.1
length 3063
RNA type mRNA
GC content 0.46
exon number 17
gene id ccdc87
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15904342 ~ 15923062 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCAGGATATTCTAGGCTCTCTGTCACTCTTTGATAACACAGCCAATAATGATATGACAAAGACAGGCATCAGTAATGATGGCAGAGTTAAGTCTTATCTGGCAGGATCTGCGTGGACTACCACCTGACCCCTTGTTGACGTCGGAGGAGAATAAGGAGTTAAGCAGCCATACTTACACTAAGGTCCTGTGCATCTGTGAGGAGCTCTACCTGCATTACTTCCAACAGCTGAAGATGCTGGAAGGACGTACTGTCTTCAGCCACCACGTCAACCGCAGCTGCCTAGCTGCCAACATGGCCGTGGACCTCAGCAGCGTTTTGAATGCTCACTCAATCCATTGCAGTGTAGCGATGGGGATCAAGGCTATGCGAGGTGATGTGAAGTTAAGAGATGGAGAGCAAGAGGAGCCTCCACAGATACACACCAAAGCTGTTCCTAAAAGATTAGAAAAGATCTGCCCACATATCAAACCTAAGAAGAGCATGGAGAGCAGGCAACAGGTGTGGACAATGGAAAAAGACCTAAAAAAGAGTCGAGAACAAATAGGAGAGCTGGATCTAGAGAAGGTCTTTGACCTCATGCCATTTCACCAAGAGCCGATAACTAGCAAAGTGGAGACGCACAGCGGCCCTGCAACTGTACCAACAAAGCTAGAAGAAGATCATTGCCTTTTTCAAAGCCGTGTTACCAGACTAAAGGGATGCAGTTCCATGCCAGACTTGCAGAGGGAGACACTGCTGGAAGAGCTGGAAGTGGCATCACTGCCAACAAGGCCTCTGTCCCCTGTAACTCGACTGTCTGCAGACCCCTGCTACAGCCTGAACAATGAAATCGACCCTGCTGAGCACCTGAAAAGATTGTTACTCACAGATTCTATAGATGAGTCCACGATGGCCGATTTCCCTCTTCTAGTTGGAGCTTTGACAAGCCGTGGCTCCAGCAGACTGGAAGAACTGAAAAATAGGCTGCAGAGACTCGAGAAAAAAGAGGAGCTGAAAGAAAAGAAGGTAAAGACTCAGCTTGAGACGGCCAGGCCGCAGCATCCGCAGGCAGCAGTGGAAAGTGTCAGTGTGTCCACTCTGGGCATTGCACGCATGGCAGCGGCTCGTGTGAGTGACAGGGTTCTACACGAGACAATCAACATCAACATGTACCCACCCGTCTACAACGACATCACTGAGATTGAGGCTTCATCAGCTGCACTGCTGGATCAGAACCTGTTTAGCGGAACTGAACTAAAAGACACCTACAAAGTTTTATCTGAAAATCTTTCGTCGGAGTACTTTAACTTTGATGAGGACCCTATGAGGGAGCCAGCTTTGAGCAGTGCTGAAGAACTGCATGGCCTGAAACACAAGCATTTAAAGAAGCTCATGAACCCTGTGGACAATTATCTTAACTACATTTCCAGCCAGGATAgtgatgatgaggaggaggatgatgaaaatgagaagataaagagagaacaAATCAGGAAGCAGCAAGAGAAGATTGATGCGTTAAAGAGGCAGAAGGAGGCCTATCAGTCTGGATTCTGGAATGCCAACACGGTGCTGATGGGTGGTCTGTGGAAAGAGCCAGTGCCAGATGAGGCAAAGGAAACTGATGAAGGAGTCCTGCATGTGGGGCCAGAAGTCCCAGTGGCAAAGTCTGAGGAAGGAGAGCAGATACATGCCAGGCTAGAGAGGATCTGGATGATTCTGTGCCTGCCAGAGATGCAGAGGCTGGACATGGCTATAAAGTACAGCACTCGTGCACACAGGGGCGAGATGGAAGAGGCAATATCAGCATGGGAGCAGGCTGCTCAGTTGATCCAGCAGAGGGAATACTTGTTATCTCATCTGGAAATGTTCGAGAGGGTGGCATCAGACCCAAGCAGGTTCTTCCAGACTGGTCACCATGGGAGCTCTGCTGCCAGAATGAAGGAGGCAAAGCTCAGGGAGAAACTGGAGTGTCAGATAGCAGCTGTAGATAAGGTGTTGTCCAAGACTGTGCGTCATATATCAGAGACCTTTAATGACACTGTAACCTATAAGGGAAGGCCATACAAAGAAAAGATGCGTTGGGACCGCACCGAGATGCTCTACTGGCTGCAGCAGGAAAGACGGGTTCAGGCACTGAAGAAGCTGGTGGAAGGGAAGGGGAGCCTGCCTGCTAGATTACCTCCTCTTCAAACGGCGTCTGACAcatgttaaaacattttaccGGTCCTTCTAAaaaaatttgcatattgtgataaagttcattattttctgtaacgtactgataaacattagactttcatatattttagattcattacacacaactgaagtagttcaaaccttttattgttttaatattgatgatttgggcaaaaaatgtaaagaaaacaaaaacaaacaaaaatctaaaaaaaattagcatatttcatccgaccaataaaagaaaatgtttttaatacaaaaaatagtcaaccttcaaataattatgttcagttatgcACTCAATACTTTGTCGggaatccttttgcagaaatgactgcttcaatgcctgtggcactgctgaggtgttatGGAGGCCCAGGATGCTTCGATAGTGGCCttaagctcatccagagtgttgTGTCTCCCAAGGTCTGGAATCTGcccttctccacaatcttcctcagggtccgGTCACCTTGTTGTGCTGTATTTTCTGCCACAATTTTTCCTTCCCACAGACTTCTCACTGCATTGCCTTGATACAGCACTCTGGGAACAACCTATTCGTTCGTTTCTTTCTATGTCTTACCCTCTTGCTTgaaggtgtcaatgatggtcttctggacagcagtcacgtcggcagtcttacccatgattgcggttttgagtaatgaaccaggctgggagtttttaaaagcctcagcattcttttgcaggtgtttagagttaatttgtTGATCCAGTTGATTAGGTTGATAGCTCATTTAGAGAACCTGTTCATAATATGCAAATTTTGTGAGATAGGAATTTTTGGTTTTCATGAGCTGTgtgccaaaatcatcagtattaaaacaataaaagacctgaaatatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86596 lncRNA upstream 156948 15745081 ~ 15749573 (+) True G64159
TU86574 lncRNA upstream 233589 15665168 ~ 15672932 (+) True G64144
TU86571 lncRNA upstream 276543 15626576 ~ 15629978 (+) True G64141
TU86506 lncRNA upstream 716552 15147026 ~ 15189969 (+) True G64087
TU86656 lncRNA downstream 32947 15956009 ~ 15956216 (+) True G64205
TU86700 lncRNA downstream 221223 16144285 ~ 16144718 (+) True G64233
TU86704 lncRNA downstream 226706 16149768 ~ 16149974 (+) True G64237
TU86750 lncRNA downstream 244002 16167064 ~ 16167378 (+) True G64279
TU86767 lncRNA downstream 437841 16360903 ~ 16368394 (+) True G64292
XM_022671152.1 mRNA upstream 335316 15564017 ~ 15571205 (+) True LOC111192874
XM_007245020.3 mRNA upstream 479734 15422001 ~ 15426787 (+) True LOC103045633
XM_022671175.1 mRNA upstream 905939 14997118 ~ 15000582 (+) True fam200b
XM_022671389.1 mRNA upstream 1179166 14721032 ~ 14727355 (+) True LOC111192957
XM_007245022.3 mRNA downstream 664 15923726 ~ 15953932 (+) True LOC103046551
XM_022671398.1 mRNA downstream 75139 15998201 ~ 16101524 (+) True LOC103027800
XM_022671399.1 mRNA downstream 189797 16112859 ~ 16141399 (+) False LOC103046856
XM_007245023.3 mRNA downstream 189886 16112948 ~ 16141399 (+) True LOC103046856
XM_015604721.2 mRNA downstream 295766 16218828 ~ 16314999 (+) True LOC103047366
TU86374 other upstream 1161439 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 2745201 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3247003 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 3437619 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 6256434 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 499172 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 516158 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 829981 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 910234 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 941456 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile