RNA id: XM_015604952.2


Basic Information

Item Value
RNA id XM_015604952.2
length 2963
RNA type mRNA
GC content 0.51
exon number 13
gene id phf21b
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9293820 ~ 9423281 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTCGGACGGAAAATATAGTCCCTCCTCTTCTTCGCTTTACACTCATTTACAACTCAAAAACACCGGCTGAATACAGCGCACCTCGGATACGCCTTTGTTCCGCGCGTTTATGGGTGGATGTTAAGCCTTTTTGTCGTCTTTGAAGCACTTTTGCGGTTtttctctatgtgtgtgtgtgtgcgcgcgtgtgtgtgtgctgctctgccgtggaagtgagtgagtgatgagtCTCGTAGCCAGTAAAGAAGCGAGAACTTGCTCAGCAGCCTGAGTAGTTCATTTCTTTCGCTTGTTTTAATCGGAGAAATCATCGTTTTTACTCGTCGACTTCGCCTGGAAAGTGGAAGAAAAGTGGTTTTCAAGTCCAAACATGGAACTACAAGGCCTTCAAGAGGCGCTGAAAGTAGAAATCCAATGTCATCAGAAGCTGGCGGTAAGAAGTTGTCCTGTGGGGACGCCAGCCAAGCCCCTCTCTCTCATCAAGCCGCCCAGCCAGAGCATAGCCATCTCGGTGGTGCCGGCCAAGGCTCCCGTTTCCATGGTGACCGCACACATTAACGGACAAAAGGCGGCGAGCTCTGAGGCGCTGCAGACGTCCCCCATCAACCTCCAAACGGCCAACCGAGCCACAGCGGCCGGCACGCAGCCCCTCAGCCGGAGACCCGGCGAGCTGTGTCACTCACAgATGCTGGGAACCCTCACAGCAGTCCCCATAAAGGTGCCTCAGGTCAGCTCTCTGCATCGGCTGGCAGGGCATTCGCCCACTGTGCTACCTCagGTTAGGCCAAAGACTCTGATCCCGGACAGCCTTCCCCACAGCCCGTGCCAGGAGCAGCAGTCCGGCCAGCCGCTGAGCCTGCCCCGGGGCATGGCCATGGTCAGCCCAAAGAGCCAGGGCCCGGCTCTGCCCATCGCCAACAGCACCTTCAGCCCAGAGAGAGTGGCTGGCAGCCAGGGGGACAGCTCCATGGCCGGCGTCTCCACGGCCACGGCCAGCCCCGGGGTCGCCTACGCCATCATCTCCTCCGCCTCACCGGCTGGCAACGGGGTGACGGCCATGAGCGAAGCAGTGAAAGTGCAGCCGCTGATCTTCAGCCCCGACAGCAAGGTGATAATAATCCAGCCGCAGATCCCCAGCAGCTCTCAGGGTTCTTCAGGTCCACCGGCTGAGATCCACACACAGGGGCCTAGTCCCGCCCCCTCCCCCGCACACAAGACcaagaagaaggaggaagacCCAGAGAAAATTGCCTTCATGGTAGCCCTCGGCCTTGTCACCACAGAACACTTGGAAGAGATCCAGACCAAAAGacaggagaggaagagaagaagtaCAGCTAACCCTGCATACAGCAGCCTGTTCGAGCCAGAGcgcaAAAGACTTGCATCAAATTACCTGAACAACCCACTGTTCCTGTCAGCACGAGACTCTGTGGATCTGTGTTGGAAGgatgagctggagcatgACGACCACTGTGCCGTGTGTAAAGAAGATGGTGAACTTCAACAGTGCCATACCTGCCCCCGCGCCTACCACCCCGACTGCTTACACCCTGCTCTCAAATCCCCACCCAAGGGCATGTGGATGTGCCCTAAGTGCCAGAAAAAGGTTCTGAATAAAGAGAATCTGTCTTGGCCACATAACTTTGTCCAGTCGTACGTCACACACAAAACAGtgagagaggaggagaagagaaaaCTGATGAGGAGAAACAGTGAGCTGAAGAAAGAGTGCACCCACCTTAAAGAAGAAGATCAGCGACTCAGCAAGTCCCTCACGTGCATGGACCTGAAGGAGCATCTCCTGAGCCAGCAGAGGGAGACCCAGGCTTCACTGGAGCGCCTCAGAACCCTGATCCGCCTCATCCAGCGCGACCACATGATCCAGGTCACCATGAcggccaccaccaccacaggaGCCTCGCTGCTCTCCCTGCCCTGGATCAAacccaccagcagcagcagcagcaccggcAGCTCCCCCAGCACCACAGCGCCCACCGCAGGCCCTGCCGTGCTACTGCAGAAGAGCGTGGCCCAGCCACAGGCCAACAACTGACCCCAGACCACGCGGCAGACCGagcaggcaaaaaaaaacaagcagacgaAGAAATAACGGAAGAAACAAAGATACGAACATTAAGACGCGACTCTGACAGCGTTTATGACTGAGCGTTTCTTTTACCGCGTTCGGCTCTTTACGGAGTCCTCTTCCTGGAGAGTGATATCTAACCATTGTGTGGGCAGCGGCGGGGCGGGCGGGGGTCGGGGGTCTTTTTTTGCAAGAGCTGTAACTTTTTTCGGatttaaatgcagaaaaaaaagaaactacagTATATCCTTCACTCGATTCATGacaagtattttttaaaacccAACACCTACAGTGCTTACGAGATTTTTTTGAAACTTATCGTTTTTTAATTTATacgttattattaaatgttcttgGCCTTAATGTATTTATgacatttaacaaaaaataacaaaaataacagaaGCAGAAAACAGTGCCGTCATGAATATGTGAAATAAGTATTCAGTACGGACGAAGCCTTTTCTTTTTATCATTaagttttgcatttttaataaagGGGGAAAAACACAGGGGGAGGGAGCAGGAggggaaaattaaataaatgttctgctAATAGCGAGAAACAACATTAGAGTAGCGGTAGACgagaaatcaaacaaacaatgaagcaaacaagcaaacaaacaaacataaaagaGACATATGATAATAAACGGAGAAGACGGTACACAGCCAGATTTATCTGTGCGAATAGATAAACTGTGCATTCTTATTTTCCAGTGATCAATGATTGCCATAATAATTCAGGTGAAAGAGAGACGgggaaatgttttttattattattataattttttttcattgtgtaTGTACTTACAAGCATACGAGccttcaaacaaaacaaaaaacaaaaaatgaatcaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84852 lncRNA upstream 260246 9032803 ~ 9033574 (+) True G62951
TU84850 lncRNA upstream 279895 9013699 ~ 9013925 (+) True G62949
TU84848 lncRNA upstream 294913 8996668 ~ 8998907 (+) True G62947
TU84846 lncRNA upstream 336869 8956751 ~ 8956951 (+) True G62945
TU84803 lncRNA upstream 679297 8614218 ~ 8614523 (+) True G62902
TU84961 lncRNA downstream 8218 9431499 ~ 9433553 (+) False LOC111192948
TU84964 lncRNA downstream 8218 9431499 ~ 9433553 (+) True LOC111192948
TU84966 lncRNA downstream 8218 9431499 ~ 9433553 (+) False LOC111192948
TU84967 lncRNA downstream 10378 9433659 ~ 9459688 (+) True G63022
TU84976 lncRNA downstream 58981 9482262 ~ 9482528 (+) True G63027
XM_022671311.1 mRNA upstream 47156 9196132 ~ 9246664 (+) True kiaa0930
XM_022671307.1 mRNA upstream 124973 9056423 ~ 9168847 (+) True LOC103042395
XM_022671306.1 mRNA upstream 411124 8789355 ~ 8882696 (+) True LOC103045143
XM_022671305.1 mRNA upstream 721148 8567297 ~ 8572672 (+) True sapcd1
XM_022671304.1 mRNA upstream 757259 8526218 ~ 8536561 (+) False LOC103041471
XM_022671319.1 mRNA downstream 195385 9618666 ~ 9639280 (+) True LOC103035489
XM_007237082.3 mRNA downstream 262076 9685357 ~ 9693289 (+) True LOC103035797
XM_007237093.2 mRNA downstream 357190 9780471 ~ 9783136 (+) True LOC103038615
XM_007237086.3 mRNA downstream 465936 9889217 ~ 9898004 (+) True LOC103036813
XM_022671320.1 mRNA downstream 477204 9900485 ~ 9925895 (+) True LOC103038308
TU84760 other upstream 753697 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 760588 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 2438058 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 3299826 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 3539536 5746204 ~ 5754284 (+) True LOC111192936
XR_002650190.1 other downstream 10156 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 223298 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 3044769 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 3236167 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3732945 13156226 ~ 13161320 (+) False LOC111192955

Expression Profile