RNA id: XM_007252400.3



Basic Information


Item Value
RNA id XM_007252400.3
length 1496
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103022369
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1842278 ~ 1845762 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CCCCTTACCTTACTTTTACGTTTATACTTTacgtagttttgaaaccagtacagTACTTACActtgcataaaaataaaaatatttaattggtaCTTCAACCTCTATGGAAGTTTAAACGGTAGTATTtgtacttctacctgagtaattaTTGTGAGTAATTTTGAGACCTGGGGGAGTAACATTCAGGCACAAGTATGCAACTGCtgcaaatgtatatatttattataagtatagttaaataatcattaattgtaAGAATATGTTAAATGCTTTACCACCAAAACCGTATGATTATTTGAATAGCTCATCCTTTTCTAATCTTGAACAACTTCAAAggaactacatttcccaggaTCCATTGCGCTCGTAAGCGCATGTTTCACGGATCATGTGAATCTTCATCTAAAAATAAAGTGAGTTTTACTCGTCTGCATGTATAAACATCCAGCGTGTGTGTGGTAATATTGCACTGAGCCAAACATGGATTTAACTGCGGCTAGACAGACGTTTTATGGAGATATAGGTTTCTGGGCGGACCGCACTCCTGTACATGAAGCTGCTTCTCTAGGCCGGGTTCTGCAGCTCAGACAGCTGCTGGATGGAGGGGCTCTGGTGAACACAGTGACGGTGGATAACATCACCCCCCTACACGATGCCTGCATCCAGGCCCACCCGCAGTGCGTGCGCCTGTTGCTGAACGCCGGAGCGCAGGTTGATGTGAGGAATATCCATGGTAGCACCCCTCTGTGCTATGCATGTGCAGCAggcagtgtggagtgtgtgaggcTGCTTCTGGATCATGGTGCTTCAGTCAACCCCACCCTCACTGCCCTCACTGCCTCCCCACTCCACGAGGCCTGCATCCGAGGTAATCCAGAGTGTGTAAAGCTGATATTATCAAGGGGAGCACAGCTGGAGGCGTTTGACATTTACTTCGGGACGCCGCTGCATGCAGCCTGTGCTAAAGAACATGTGGAATGTGCTCTGCTGCTCCTTAATGCAGGTGCCAGAGTGAATGCCATAAAGTTCCATGAGACAGCTCTCCATCATGCTGCGAAAGTGTGCCGGACGGACCTCATTgagcttctggtggagtttggGGGAAACATTTACGTCACAGATAATCTGGGTCGCAAACCCATAGACTACACCACTCCTGGCTCTCCAGCTCACCTCTGTCTACAGCACTTTGAAAatattcctctctctctgcagcagcTGAGCCGTATTGCACTGAGGACAATGCTGGGAATCAGAGCTCTGCAGGTTGTGACCAAACTGGACATCTCACAGCGCATAATCAGTTACCTCTGTTATAAACAATGGTCCAGCACAACTgaattataatactgtattaaagCTGAACACAATAATGCAAAGAGGAAAAAGAGTCCATGGACTTTGTTTTTGCACCTTTAGCTGCTAAGGTCTTAAAATGTGGTGCCATGAATGTTATGATTGtaataatgtataaatgtaataaaaaataaatatta

Function


GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82504 lncRNA upstream 51846 1789535 ~ 1790432 (+) True G61132
TU82503 lncRNA upstream 81096 1758838 ~ 1761182 (+) True G61131
TU82451 lncRNA upstream 220721 1609125 ~ 1621557 (+) True G61100
TU82430 lncRNA upstream 336461 1505343 ~ 1505817 (+) True G61085
TU82423 lncRNA upstream 360860 1479157 ~ 1481418 (+) False LOC103024246
TU82563 lncRNA downstream 7553 1853315 ~ 1854950 (+) False G61168
TU82580 lncRNA downstream 7553 1853315 ~ 1855346 (+) False G61168
TU82581 lncRNA downstream 7553 1853315 ~ 1855346 (+) True G61168
TU82565 lncRNA downstream 8164 1853926 ~ 1854950 (+) False G61168
TU82567 lncRNA downstream 8164 1853926 ~ 1855346 (+) False G61168
XM_007252402.3 mRNA upstream 851 1826840 ~ 1841427 (+) True LOC103022887
XM_022671213.1 mRNA upstream 16843 1812200 ~ 1825435 (+) False ankrd16
XM_007252403.3 mRNA upstream 16843 1812201 ~ 1825435 (+) True ankrd16
XM_022671212.1 mRNA upstream 36536 1714817 ~ 1805742 (+) True LOC103031096
XM_007252404.3 mRNA upstream 148312 1630873 ~ 1693966 (+) True LOC103023715
XM_015606649.2 mRNA downstream 776 1846538 ~ 1861838 (+) True LOC103022068
XM_022671214.1 mRNA downstream 75698 1921460 ~ 1929905 (+) False LOC103036328
XM_022671216.1 mRNA downstream 139111 1984873 ~ 2001629 (+) False mkrn1
XM_022671215.1 mRNA downstream 139112 1984874 ~ 2001629 (+) True mkrn1
XM_007259768.2 mRNA downstream 158080 2003842 ~ 2005246 (+) True tmem121b
trnay-gua_8 other upstream 20502 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 20943 1821248 ~ 1821335 (+) True trnay-gua_7
trnay-gua_6 other upstream 23677 1818514 ~ 1818601 (+) True trnay-gua_6
trnay-gua_5 other upstream 24123 1818068 ~ 1818155 (+) True trnay-gua_5
trnay-gua_4 other upstream 25788 1816403 ~ 1816490 (+) True trnay-gua_4
TU82609 other downstream 75633 1921395 ~ 1935499 (+) True LOC103036328
TU83070 other downstream 1450784 3296546 ~ 3303998 (+) True G61575
TU83069 other downstream 1453327 3299089 ~ 3303998 (+) False G61575
TU83815 other downstream 3900442 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 4136611 5982373 ~ 5993994 (+) True c7h12orf75

Expression Profile