RNA id: XM_022671254.1


Basic Information

Item Value
RNA id XM_022671254.1
length 3993
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC103039416
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4335118 ~ 4426156 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGCAGGCTGAATCCTGAAGACTCGTTTCCAGAGAGGATCCAGTCTGAGCAGCGGAGTCCAGCCCGAAACTCTGGCGATTTCCAGCCCGTCCACACTTCCACAGTGACTGCAGGGCCGCACCTCCGGGACCGAACCATGGATGATGACTTCGAGCGGCGCAGGGAGATGAGGAGGCAGAAGCGAGAGGAGATGCGCCTGGAGGCTGAGAGgatgGCCTATCGGCGGAacgaggaggacgaggaggaggcGGCTCGTGAGCGCAGGCGAAGAGCTCGGCAGGAGCGCCTGCGCAGCAAAGACAGCGAGGAGGCGCCGAACCCTCCAGAGAGTGTGGAGCTAAACAACAGCCACAGTGTGACTGTTACAGAGACGGTGTCCAGCTCAGTGGTCAGCTCTAGCCAGGCAGGTGAAGACGACGATGAGGAGCAGGCCCTGCTAGATCGCCTCGCCAAGCGCGAGGAGCGCCGGCAGAAGAGGATGAAGGAGGCGCTGGACAGACAGAAGGACACGGATTCCCCCGACTCCACTCACTACAGCACGGAGGAGCGCTCCAGCAGCCGCCGCTATCACTACCACGAGCAGGAGGAGCAGCCTGCACTCAACAGCAAGGAGCAGGAGAATGAGGAGGccaaggaggaggaggaagaggaggctgcagcagaagaggaggaggaggaagagcagaAAGTGGAGGAAGTGATGGAGGAGAAGCCGCGGAGGTCTTACCTGAGGGCACAGGAATCCGCTGAGGAGAAACCTCAAATAGAAGATGAGGGCAGCACTGAGCAGGAGGCTGCAAGTGAAAAGTGTGAGAATGTAAATGAAGACACAGCTGATTCCACAGTCTGCTCAAAGCCAGACGTGGACGAGGACACAGCAGGAGTGAATGAGGATGTAGAGGAAGGAGAGGAGGATGAGTTAGAGGAGCTCGAGGAGAATGCAGATGATGAAAATCAGGAGACAGCTGTGTCTcaggaagcagagagagagtttaCAAGCAATGATTTAGGTTTGATGGAGGACGAAAACGTGGGGAGGAAGAGCAAGCAGCAGAATGGAGGAGTGTATGAGGACAGCAAGCACAAGAAGGTGGAGAGAACCACGAGCCGTGGCAGCCTACGCTCTCCCGAGGTCCCGACAGCGGAGGATCAGGACGGGGAGGGAGCTCGTCTGGAGGCAGAGCGGAAGCTGGAGGAGCTGAAGCGGAGGAGAGACGAGACGGAGATCGAGGAGTTTGAGAGGATGAGGCAGAAGCAGCAGGAGGCAGAGGCCGAGCTGGAGGAgctgaagaggaagagagaggagaggaggaaggtgctggaagaagaggagaagaatAAGAAGCAAGAGGAGGCTGAGAGGAAGGCTAAAGAGGAGgaggagaagagaaggaTGAAGGAGGAGATCGAGAGGAGAAGAGCAGAAGCAGCAGAGCGGAGGCAGAAGGTTGGGGAGGAAGTGGACGGAGACACCAGGAAACCCTTTGTTTGTGTGAGCCCCAGGGGATCCTCCTTGAAGATTGGTGAAAGAGCAGAATTCCTCAACAAGTCAGCACAGAAAAGTGGTGTGAAGACGTCTCACTCTCCTGTGGTGTCAAAGATTGACAACAGATTGGAGCAGTACACCAGTGCTGTGCAGactaaTAAGGACGCACGCTCGCCACGGTCCGGCGCTATTGACCTGCCCATGGTCACTGATGGCATTCGGAACATCAAGAGCATGTGGGAGAAGGGAAATGTCTTCGGCTCTGGCCCCGGGACACCGTCCAGCAACAAGGATGCAGCTGGGATAAAGGTGGGCGTGGCAGGCCGGATCAACGATTGGCTGAATAAAACCCCAGAGACGGGCAAAATGTCGGGAGGGAGACCTGCAGACCTGAAACCCGGCGATGTGACCAGCAAGCGCAGTCTATGGGAAAACAAAGGCTCCTCTGCTACCAAGgtGACAAGCAGAGGAGAGAGCAAATCTTTTGCCAATGgAATGGGCCACTAACTTTTCAAGAAGCCACAGCACCAGGGACCAAGAGACAGCAGCATCTtccttttttatatgtatttactcAAACCAAAAATAATAGTCTGCGTTTCCCACTGCCCATACATCTCAGAGACGAGAGAGAAAATAGAACAGGGTTGTATTTTTACCACTGCATGTCGCATAGTCCTAATTACAGCGTAGCGCTTAGCATAAAGCCTCATTTACAGTAGAAACTAGTCTGAAATGTGGACCAAATGaccaaaaggttttttttttcttttcatttttagatAAGAATAGATGCAACCTATTTAAAGGTCTCATGTAATTTCATGTCATGTTATAAACATTTgttgctgtttctttgtttgtttttttactttaaagctCTTCTCTGCTAGTCACCCTTCTTCACACcctttttaatttataattaaagcAAAAGCTTCACATATtggtattttattaatgttcacCAGTACAGGGCAGAATATGAGCACCCATAGAGTAGTGTATTGTCTACTTTTGTCAtaatgacactttttttttatagtaaaacTATGGTCTTAATAATATATGTTAGCACATAGTGTATGTTTtgtaattaactatatattttatatgttgccGCTTTATACGAGATGATGTCCTTGCTTTTGCTCTCGATATCATATGTTGGATCAAGTTTAAAATCATTATAGACATTCCATAATTAttattccacatttttttttctttcactggTATTACAAGCGCTTTGTCGTCAGTATATTCACTATGATATATCTGATTCTTAACGGACGTAATGGCTTCGCTCTGCACTGAATAAAGGGAACATACACTttttgacaaaaatgaaaaactgacaaaaaaataatagttaaaataaaaataaagttcacATTTCTTTGCAATATATAACGCTTAATATCCTACCAATAAGGCTGCGGTTTTCTTTATCAttatcaacaacaacaacaaaataaacagtaatgttCTCTATGTTAAAGGAAAGGGGCATGAATGGCTTACTGCCATTACTGAGGACCAATTTATGTTGTTTGTgttatttgcttgtttgttacttttttgtttattctgcACCAATTCCCTGACCAGAACACCATCACTATCCACTATCAGTAACCTTGGCAAATACAGTCTAATACAGAGTTTGACTATTAAGATTGGTCTTAATTATTTACTGCCCAGATCAGTGAGTGTGTTACAGGCACTCAAAAATCTGTTCATCGGATTGGATCGGATTACTGCAGTTATCTTTATATACAATGTAAGAAATCTGATAAAGTGAGATGAATTTTAGCTCAgcaatctgatttattttagtGCATGTAAACTCTTAATCAGAGTATTCTGGGATTTCTCAATCTGCGCATGCAAGAAAACAGACTGTGGCAGCAAAAATAAAGGAAGCAGTGTTTAACAGCACCAGCGGGATGGTGACTAACACTGTCAGAACGACGCTGAGGCTGAAGGATTTAAATAATCTTCATCTTCTAGCTGATGTATGttcacattgtaaaaaaaaaaaaaaacagaatgatgTTTGAGTTTCACACAATGTTTATGTCAAGtctgattctgattttattGGCTGTTTTCAAAGCAAAAATCGGATTATTGCCTGACTCATGTAAGCTCGGATTTTTTTCATTACCTGATTACCCAAGTTCATGAAACAAATGTCAGGgttctgcagtaatcagattatgaagtgcatataaaaacacactcactgatATGAAGATTCATGTTTTGAAATGTGAACAGATCTGTGTTCTGGTCTTATTGTTGACAATCATAACCCCATGTTGAGTCTTGACTTATAAACAGTTCTGCTTTGGATCAGGGTAACTCTGTGCAAATCACAGCCACTATAATTGCAATTATCTTGTCAAAATTTTGTTTAATGACCTTGTTTATTGTAGCTGATAGTGTTGTACGGAACATTGACTCAGAAACTGCAATAAAGAgatcaatgaaaaaaaagcaa

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0017022 myosin binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83479 lncRNA downstream 21379 4312049 ~ 4313739 (-) True LOC111192867
XR_002650149.1 lncRNA downstream 21393 4313026 ~ 4313725 (-) False LOC111192867
TU83467 lncRNA downstream 185301 4149551 ~ 4149817 (-) True G61856
TU83462 lncRNA downstream 204154 4130339 ~ 4130964 (-) True G61851
TU83444 lncRNA downstream 235737 4083724 ~ 4099381 (-) False G61837
TU83538 lncRNA upstream 97003 4523159 ~ 4523371 (-) True G61907
TU83561 lncRNA upstream 170410 4596566 ~ 4596986 (-) True G61930
TU83571 lncRNA upstream 194566 4620722 ~ 4621086 (-) True G61940
TU83572 lncRNA upstream 195455 4621611 ~ 4621826 (-) True G61941
TU83574 lncRNA upstream 197731 4623887 ~ 4624210 (-) True G61943
XM_022671253.1 mRNA downstream 1106 4318440 ~ 4334012 (-) False LOC103040249
XM_022671252.1 mRNA downstream 1106 4318440 ~ 4334012 (-) False LOC103040249
XM_007252705.3 mRNA downstream 1106 4318440 ~ 4334012 (-) False LOC103040249
XM_022671251.1 mRNA downstream 1106 4318440 ~ 4334012 (-) False LOC103040249
XM_007252703.3 mRNA downstream 1106 4318440 ~ 4334012 (-) False LOC103040249
XM_022671256.1 mRNA upstream 21720 4447876 ~ 4461525 (-) True LOC107197701
XM_022671257.1 mRNA upstream 574794 5000950 ~ 5199612 (-) True LOC103023194
XM_007252710.3 mRNA upstream 888401 5314557 ~ 5336399 (-) True LOC103042505
XM_022671259.1 mRNA upstream 1030553 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 1030553 5456709 ~ 5494645 (-) False LOC103037729
TU83243 other downstream 676850 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 786416 3544185 ~ 3548702 (-) False mdm1
XR_002650183.1 other downstream 786447 3529527 ~ 3548671 (-) False mdm1
TU83187 other downstream 786696 3544185 ~ 3548422 (-) False mdm1
TU83086 other downstream 1019879 3314153 ~ 3315239 (-) True G61587
TU83573 other upstream 196057 4622213 ~ 4622577 (-) True G61942
TU84110 other upstream 1948313 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 2206854 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 2245454 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 2295946 6722102 ~ 6723530 (-) True LOC111192868

Expression Profile