RNA id: XM_007252707.3


Basic Information

Item Value
RNA id XM_007252707.3
length 4180
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC103041372
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4675359 ~ 4701435 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTGAGCGCCATCGCTATTGGCTGCGGTGATATTAACGACCGTTAGGCTCGCGGCAGCAGCATGTCAGTGTGGGAAAGCGATGGAGAGGGAGTCGCTCCTGTAAACAGCGGGGAGAGAGTGGAAAACGAGGCGGGAAGGATTGGAAAGAAGGCGTTTAAGTAGTCCAACGTCCTTTTGGGCTGAAGCTGGGCTGTGGAGAGTGAAAAGCCGAGACGGGTGTCGTTTCTTCGGCGGGAGAGAGAGGCTCgcgcggctgctgctgctgctccgtgGACCTGCGCCGCACTGTATGAGGAGAAACGGAATACATCACTTCTCTGCGTTGAGTCATACCAGTGGAAGTGGACTGAAGCAATGATGGCAGCTCATAATCACCAGAGAGACTGTTCTACCACTGAAGTATTACAGAAAATTAACAGCCTCACTTCTGCTTAGCTGAAACACAACCCCCAGAGGCATATGCTGGTcattttacctttatttatttgGCCTGTATGCCCTTTCCTATATTGCAGAGACAGGGAGACTTAGTAAAGGGCCTCCCTGCATCAGCACACAGTAGATCAACCAGTCAAAGCCCAGGGGACACAATGTGGGATTAGATCTCCATCACCTGATCAACAAATGGTCCATTATTTTTGAAGAGCTCTGACCACTTAATTTACAAGGACCCATTATTTGCTGGAGGGAATCAGGCCAAAATGAAAGACATATCATTTGTGGATTATTTGCTACTGGGGTTTGCAATGACTACCTTTGTTCTGGCTGTGGAAGAGAAGGGCAGCTGCCCCAAGCTTTGTGAGTGTGAGATTAGGCCCTGGTTTTCCCCCAGCTCTGTTTATATGGAGGCTCCTACGATTGACTGTAATGACTTGGGACTTTTTAACTTTCCATTAACATTACCTGCAGATACGCAAGTCAttttactacagacaaacaACATCGCCAGAATTGAGAAGCCTTTGGATTACTTGCTCAACATCACAGAGATTGACCTTTCTCAGAACAACATATCCTCCATAAGAGACATCAACCTGGGCCACCTCCCTCAGCTCTTGTCCTTGCATATGGAAGAAAACTGGATATGCTCCCTACCGGATAATGCCCTATCTCAACTCCTCAATCTTCAGGAACTGTACCTAAACCACAACCTTATTTCTTACATCTCCCCTGCTGCTTTCTTTGGGCTTCACAACTTGCTCAGACTTCATCTCAATTCAAACAGGCTTCAGAGCTTAAAGAGTGAATGGTTTGAGTACCTGCCCAATCTAGAGATCCTAATGATTGGAGAAAACCCAATCCTCTCCATACAGGAAATGAACTTTAAGCCCTTAAGAAACCTGCGCAGTCTTGTTCTTACAAGGATGAACCTGTCTAAGATTCCAGACGATGCACTGTCAGGCCTTGACAATCTGGAGAGCATTTCTTTCTATGATAATACTTTCCCTATGGTTCCTCATGGTGCCCTCCGACACCTTAAGAACCTCAAATTTTTGGACCTTAATAAAAACCCCATTGGACGAATTCAGAGAGGCGACTTTGTGGACATGCTCCATCTGAAAGAGTTGGGCATTAACAACATGCCAGAGTTGGTTTCCATTGACAGCTTTGCTCTCAACAACCTTCCGGAACTGACCAAGATTGAGGCTACCAACAACCCGAAACTGTCCTATATCCATCCCAATGCCTTCTACAAGCTACCTAGGCTGGAAACTCTAATGCTGAACGGAAATGCCCTCAGTGCCCTTCATCGGATCACTGTGGAGTCTCTCCCCAATCTACGGGAAGTCAGCATGCATTCCAACCCCATCCGCTGTGACTGTGTAGTGCGCTGGATGAATATGAACAAAACCAACATCCGCTTCATGGAGCCTGACTCCTTGTTCTGTGTGGAACCCCCGGAGTACGAAGGTCAGCATGTGCGCCAGGTTCATTTCCGCGAGATGATGGAGATCTGCCTGCCTCTCATCTCTCCAGATAGTCTGCCCACTCAAGTCGCGATAGACAACGGGAGCTCCTTGTCCCTGCACTGCCGGGCCTTTGCTGAACCAGAGCCAGACATCTACTGGGTTACTCCGTCTGGGCACAGGGTCCTTCCGAATGCTGTGGCGGAGAAGTTTTACATGCATCCCGAAGGCACTCTCGACATTTATGACATCACAGAGCGAGAGGCCGGACTGTATACGTGTGTGGCGCACAATCTTGTCGGTGCAGACCTGAAGTCCGTCTCTGTGGAAGTGAACGGATACTTCCCACAGCCTGCCAATGGCTCTCTCGATGTCATCATCCAGTCGGTGCAGGCCAACTCTGTGCTGGTGTCCTGGAAAGCCTCTCACGGAAGCCTGGCTCCAAATATCAAGTGGTACACAATGCCCAGCACTGACCATCCAACTGTAGCCTTCACAGCAAGAGTCCCATCTGATATGAGGATGTATAATCTCACACATCTCAGTCCCGCCACTcagtataaagtgtgtgtggatgtAAGGAGCACCCAGCACAAGCATAACACCCAGTGTGTCAATGTCACTACGAAAGGATTAGAGCGAGCTGTGGAAGACACTGAGAAGTGGGACACAGCAGTGATCGCCATCTTTGGCGTGCTTCTCACCACCATTTCCATAGCTTGCTTGCTGATTTGCATGTCTCTAAGGAACCACCACTACCTTTACGGGGAGTTAAGGAGATGTCCATCAAAGATGGCACTGACACCTGAGGCTGGCACGCAGTCTTCTTTTACAAGGCTATGGGTTTCTGGGAAGGGGATGCCGGCTGCTGTGGAGGTGAAAGCTACAGTCATAAATGTGTTGGACAATGCCTTCTAAGCAGCCCACTCAGAGGACTTCTGCAGAAACCATAGCAAGCTGACAGGGCATGGAAGGAGAAAAACGTACCGTTGCAAATGTGTATCCTCCTTTTGCCTTGACATACAAACAACTATTGAAATGGAAGAGGTGTCTTCACATTTAACCAGCGCTATAACCCCGATAATGACCAGTTCCAGGTGGCAGAGGAGACAGAATTGTGGTCTCTAGGAGGAGGAAAGTCAAAGTCGAGACTCTTCTTTGAAAATGAAACATGAAGTATGGATTGCGATTATTCTGGGTCATTCACTGGGTGCAGGTGGTCAACAAATGGAAACAAAAGAAAGGTgttatttcttataaaatgacTGTTAATCATGTAAACAGTAGTGAAGCAGTCCTTGTGGTCCCAAGCAATACCGTCTGTGCTGTACAACATCCATAGACGCGTTAGAGAGGCCAATTCTTTGTAAAGGGGAACATCCAGTAGACTAGACAATTATAGTGACTATGGTGTAAATTTTTGATGAAATAtatcttttttctatttaatagaGGATTTTGACTTTTCATGGCTACAATTGTTATATATTCTATCCAAAAATGTAACAGATATGTTCTGTGCAGTAGCCAGGTATTAATACCAGTGTGAATCCAAAATTAATTACAGTATGAAAGAAGTAACACACATAAAGCTATCAGATATCTCACTTCTGCTGTCTTAAACTGTACGTCATAAAGAATAGATTCAAAATACATGAAACAGCAGTACGCCGGCCACACAAAACATCAGAGAAGCATCTCCTGGTGTAGAATTTGGGTAAAACTTTGTTTAAGCCAGGGTAAGTGCCTACTTCAAGGAGAGTGTGTAAACTAGGAAAATGCCAGAATATCACTCACAGAATATAGCAGTTTCTTGTCAGACCAGTGCAGAACAGCGCAGAAGTTACGGCCGCAGCTTCACAAGCCAATCTCAGCTCAACCCTTCATTGGAAATACCGTCTCAGTACTTTAAGCATTCACATGGTTCAACAGCATTGCGTTCTTGCTTTGGGTGTTAAAGTTAAAAGCCATTTTTATATTGACTGTGCTGTCTGTGATACCTGCGCACATTAGTCAACAAGACTCTGTGCAAAGaagaaaatactgaataaatgtcAACGTCTTTTTGCAATCAGGATGTTTCCTACTTTGCTTTATTTTGAGTGAAGTAAAAAGATCCTCACATATTTACTGCTGGATTCACATCATGTGTGTAAATTTGTTCCTATGCTTGTCTGAATGTTGGTGAATCTGGGTTATACATACCACCATCTGACATGGGATGTTCACGAATGTGCAGGTTTAGGCCTATAAAAAGATACTGTATTGCGA

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83560 lncRNA upstream 79097 4596051 ~ 4596262 (+) True G61929
TU83545 lncRNA upstream 113483 4528087 ~ 4561876 (+) True G61914
TU83491 lncRNA upstream 312331 4339686 ~ 4363028 (+) True G61873
TU83495 lncRNA upstream 312331 4360451 ~ 4363028 (+) False G61873
TU83490 lncRNA upstream 318357 4350990 ~ 4357002 (+) False G61873
TU83630 lncRNA downstream 68502 4769937 ~ 4770173 (+) True G61996
TU83633 lncRNA downstream 94287 4795722 ~ 4796011 (+) True G61999
TU83638 lncRNA downstream 133837 4835272 ~ 4835472 (+) True G62004
TU83667 lncRNA downstream 285987 4987422 ~ 4987718 (+) True G62030
TU83673 lncRNA downstream 297806 4999241 ~ 5002904 (+) True G62036
XM_022671246.1 mRNA upstream 575970 4083683 ~ 4099389 (+) True mcm10
XM_022671247.1 mRNA upstream 575970 4083683 ~ 4099389 (+) False mcm10
XM_007232266.3 mRNA upstream 600796 4048242 ~ 4074563 (+) True LOC103027723
XM_007232267.3 mRNA upstream 600796 4052342 ~ 4074563 (+) False LOC103027723
XM_022671245.1 mRNA upstream 600796 4054051 ~ 4074563 (+) False LOC103027723
XM_022671258.1 mRNA downstream 549698 5251133 ~ 5261551 (+) True ifrd1
XM_022671166.1 mRNA downstream 720333 5421768 ~ 5423304 (+) True LOC107197570
XM_022671267.1 mRNA downstream 1039120 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 1051867 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA downstream 1056718 5758153 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 1371361 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 1371361 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 2739860 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 2853583 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 2854024 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 1044769 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 1280938 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 2149795 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 3831324 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 3831913 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile