RNA id: XM_007252710.3


Basic Information

Item Value
RNA id XM_007252710.3
length 2349
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC103042505
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5314557 ~ 5336399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCTCTGTACTCACCAGATTTGGCCCTCCTCAGACACCGTACTTGTAGTCCGGAAACACAGCGAGCAGGAGAAAATGAAAGGCGTTTCGTGAATAAATAGACATGGCGCATGGCACAGACTTTACCTCAACTTCCATGAATTGCTGCCTTTAACACTACATTACACCTGAGCAGAAGAGCCTCCATCCAGCCGTAATGAATCCAGAGGAGCCAGAGAAGGAGGTGGACATGTGGTCCTCCCTCCGCTGCCTGGGCTACCTGTCCAGTCTAAACTTGCTGGTGGCAGTATGTCTGGGGATGTATGTGAGGTGGGAACAGACATCTGAGCCCACCATCTTGGTCATCTTCATCTTGGGTCTGTTTGTTTTGGGCATTTCCAGCATCCTGTATTACTACTTCTCCATGGAATGGGCCAGTCTCAGCCTATTTCACCTGTGGTTTGGCTTCCTGCAGGGCCTCTTGTGCTTCGTCACCAACCACTCTCTGGAGATGAACGTGAAGGAACAGGTCACAAACTACCTATTGATCGCTAGCGTGGCAGTGCGGTCATTGTGGGCCCTGGCGGAGCGCCTGTGTGGCAGTGCCAGCTACCGGAGAGTTGTGCTCACCTCAGCTGAGCAGCTTGAGCTGCTGGGATTTGGCATTGCCTGCACCGCTATGGATCTCCACAAGGCAGTAGCAGTCATCGCCCTGCTGGTGGCCTTAGCGGCCATCATCGTAGACCTACGCATGAAGTCCCTCCTAGCCCTTCCCAACTTGATCGGCTTTTCCGTGGTGGCCTCCATCACCTTCTTCCAGGCTCTAGATGTCCAGACTAACCCCTTCGCCTTGGGCTGCTACCTGGGACGCCTCATTTGTGAGCCCCTCCTGGACGTCTACTTCAGCGGGTTGTCTGTGACTGAGCGCTGGATGCCTTTTATGTCGACTGGTCAGCTGTGGAGGAAACTCACTCTCCTCCCGCTGAGTGCTATAGAGCTGATGTTTTTTGTGCTTAGTGCCCAGAAGCTGAGTGACCTCAAGTTCTGGTACCTGGTCATCCCCGGCTTCTGTGTGTTTGGCCTCTTTTGGATGCTGTGTCACGTGGTGTTTCTAGTCACGCTGTGGAGCTTCCACACCAAGCTGAGCGAGTGTCAGAAGGTTCGAGCTACCCAGCGCTCAGACACACGCAGCCTGGACAGGGTCATGGCCTCCAGGGGGATGCGCCATTTCTGCCTCATCTCTGAACGGCTGGTGTTCTTCAGTCTGGTCTCAACTGCTATACTAGGGGCTGTCTCCTGGCAGACATCTAATGCTCTCTTCATGAGCTTGTTCCTGGTGGTGTTACCTTTGGAGTCTCTGGCACACGGACTCTTTCACGAGCTCGGGAACAGCCTGGGAGGGACCTGTGTGGGCTACGCAGTGGTCATTCCTACCACTTACTGCAGTGCTGATGGGCAGCCAGTGCTGCTTCCCCCAGAGCAGGTCCAGGAGATGAACTTGCGCTCGACAGCCACACTGAACGCCGTGCAGAGACTCTTCTCGCACCACCTCATCCAGACATTCGGCTGCGACTACTCCACCAGCGGCCTGAGTCTGGAAGCATTGCAGGCCAAGCTGCGCTCCTTCCTCGAACTGCGCACCGCCGACGGCCCACGCCATGACACCTACCTCATCTACTACAGTGGACACACACTGCCCACTGGAGACTGGGCCCTCATAGGTGGGGATTGTCTGCGTCTGGAGCAGCTCATTGATTTGTGGAGAGAACGGAACGTTGGCTTCTCCTCTCGACTCATCTTGATTCTGGATACGAACCACTCAGTGCCTTGGGTAAAGGCAGCGAGGAGGGTGGAGGGCCTGTATGTAGCAGTTCAGGGAGCAGAGATGAGTCCAGTGGGAGATGCCGAGAGCCAAGACGGGCCTCGTCTAGGAGATTTCACCTCCGAGTGGGTGGAGTATAACTGCGATCCCGACAGCAGCGTGCAGTGGTCAGAGAGAGGTCGGCTTATCGCTGCTACGTACGGCGTGTCTAAGTGCTGGAGTGACTACAGGCTCCACCTGCCCACTGGCAACGACGTAGAAAAGCACTGGAAAACCCATTTCCCCAGGGCCACCTTCCCGCTGGTGGCTGTTGCCAACTGGTGCTGTGGGCTGAACTTGCTGTGGCTGTGCGGAGCCTGCCTACGCTGCTTCAGGAGATTCAAACTGGCCTGGTTTCCTCCCACCATCCTGGACACAGGACAGGGAATCAAACTGGTGCGATCGTAGACACAAGCAAAGACTTGAATGCTGTaatatgctgtatttttttattagcataccgtatttttcgcactataaggcacactatgtttatttaaatgtttatt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83726 lncRNA downstream 21495 5292855 ~ 5293062 (-) True G62083
TU83701 lncRNA downstream 119776 5193560 ~ 5194781 (-) True G62063
TU83694 lncRNA downstream 242820 5064638 ~ 5071737 (-) True G62056
TU83692 lncRNA downstream 270746 5042509 ~ 5043811 (-) True G62054
TU83634 lncRNA downstream 518547 4795715 ~ 4796010 (-) True G62000
TU83727 lncRNA upstream 15529 5351928 ~ 5352169 (-) True G62084
TU83730 lncRNA upstream 24146 5360545 ~ 5360794 (-) True G62087
TU83732 lncRNA upstream 62555 5398954 ~ 5399189 (-) True G62089
TU83770 lncRNA upstream 95691 5432090 ~ 5432388 (-) True G62121
TU83775 lncRNA upstream 107183 5443582 ~ 5450277 (-) True G62125
XM_022671257.1 mRNA downstream 114945 5000950 ~ 5199612 (-) True LOC103023194
XM_022671256.1 mRNA downstream 853032 4447876 ~ 4461525 (-) True LOC107197701
XM_022671254.1 mRNA downstream 888401 4335118 ~ 4426156 (-) False LOC103039416
XM_022671259.1 mRNA upstream 120310 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 120310 5456709 ~ 5494645 (-) False LOC103037729
XM_022671261.1 mRNA upstream 308110 5644509 ~ 5653023 (-) True cmas
XM_007229732.3 mRNA upstream 322049 5658448 ~ 5663281 (-) True kcnj8
XM_007229731.3 mRNA upstream 328502 5664901 ~ 5726282 (-) False abcc9
TU83573 other downstream 691980 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 932506 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 932507 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 1656289 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 1765855 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 1038070 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 1296611 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 1335211 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 1385703 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 1398764 6735163 ~ 6737948 (-) True G62484

Expression Profile