RNA id: XM_022671280.1


Basic Information

Item Value
RNA id XM_022671280.1
length 3137
RNA type mRNA
GC content 0.47
exon number 2
gene id gpr85
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6851168 ~ 6855742 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCGCGGTCGGTTGTCAGAGCGGGGGACTGGGGAGGGAGCTGCTCGGGGAGACCGAGCCGACCCACAGCAGTTCTAACGGAGACTCACTCGGGATTTTTTTAGGTGTGATGAGACAAAGGAACAAAGGATGCCTTAGAAGAGAGGCAGATAACAAGGCTGGAATCTGCTTCAAAGCACACCAAATGGATCTATCGCTCCCCATTGCATCCAGATCATGATACTTGGCTGAAGCTTTAATCATCTATATGATCCCTCCTCCATCTATGGCGAACTATAGCCATGCAGGGGACCACAACATCTTGCAGAATGTCTCTCCGCTTGCCACATTCCTTAAACTGACCTCCCTGGGTTTCATCATCGGCGTCGGGGTGGTCGGAAATCTCCTGATCTCCATCCTGCTGGTCAAAGACAAGAGCCTGCACCGCGCACCCTACTACTTTCTGCTGGACCTGTGTGCCTCGGACATCCTGCGCTCCGCCATCTGCTTCCCCTTTGTGTTCACCTCGGTCAAGAATGGCTCCGCCTGGACGTACGGCACGCTCACCTGCAAAGTGATCGCCTTCTTGGGCGTGCTTTCCTGTTTCCACACGGCCTTCATGCTGTTCTGCATCAGCGTGACACGCTACCTGGCCATCGCCCACCACCGCTTCTACACAAAGAGGCTGACCTTCTGGACCTGCCTGGCCGTCATCTGCATGGTGTGGACGTTGTCGGTGGCCATGGCTTTCCCGCCGGTGCTGGACGTAGGCACCTACTCGTTCATCCGCGAGGAGGACCAGTGCACCTTCCAGCACCGCTCCTTCCGCGCCAACGACTCGTTGGGCTTCATGCTGCTGCTCGCCCTCATCCTCCTGGCCACCCAGCTTGTCTACCTCaagctcatcttttttgttcaCGACCGTCGGAAGATGAAACCCGTCCAGTTTGTGCCAGCGGTCAGCCAGAACTGGACCTTCCACGGTCCGGGAGCCAGCGGCCAGGCCGCGGCCAACTGGCTGGCCGGCTTCGGCCGAGGCCCCACGCCTCCGACCCTGCTGGGGATCCGTCAGAACAGCAATGCGGCAGGCCGCAGGCGTCTGCTGGTGCTGGACGAGTTCAAGACTGAAAAGAGGATAAGCAGGATGTTTTACATCATGACCTTCTTCTTCCTGAGCCTGTGGGGGCCCTATCTGGTGGCCTGCTACTGGAGGGTGTTCGCCAGGGGCCCCGTGGTGCCTGGAGGCTACCTCACCGCAGCTGTGTGGATGAGCTTTGCTCAGGCGGGAGTCAACCCGTTCATCTGCATTTTCTCCAACCGGGAGCTCAGACGATGCTTCAGCACCACGCTCCTCTACTGCAGAAAATCCAGGTTACCTAGGGAACCCTACTGTGTTATATGAAGGCTtgggttttttcttttttggtctTGGGTATTTTTTGGCTGCCCTGATTGGTCAGGGATACATCCCGTTGTATAGCtctcctccttttctctcctcttcaCTATAACCCCACTCCCCACGCACCCCAGCCCCCCACCCTGTAGGCCTGATGTGGAACTGTCAATCATACACACCTCTTGATGTGAATGAGCGCCAGACGTGAAGCTCCAAGggaataaaaataatcaggGAGTGGAGGACCCCTCCTGTGTTTATGTTCTAGTAAACAACTGCTGCAGAAGGCTGTTTTAAAGCagataagcaaaaaaaaagaaaaagaaaaaaatgaaagaaagaaaaaacgaaagaaaaacaaagaaggaaagaaatgtGATATTAACGTTAAGACTGACCCTTTTGATTTGGATATGTTGAAGACTCAAGGTGTACATGACAGAAAACAAATCTGAATTCCTTCTGGGAATCACTGGAAtggttttgtgtttaaaaagttgCACTAAGTTATAAAAGAAGTTAAAAAGATGCTTTTTTTGCTGAGTTGCATTGCAAGgatgtctcttttttctctctccccaaACTGAAATATGAATGCTTTCATTTGCAACAGACTTCTCATTCactgtaagtaaacaaaacatgtGGGGTGACTCTGTTGGAATACACCTTCACAAGAGGATAAAATTGGTTTAAATGTAAGTgatatcttttctttttttccaactttCTGGGGACGAGCGGGGGAGGGGGCGGGATTTAATGGATACTGATGTGTGGTTTTCCAATTGCAACTTAAATTATTTCCTGTAGTTTTATGATCCATGCAGTATGTCCGTGTCTGGCAATGTTCTTTTCTTATCTCGGTTTCTAACAGTCTTAATGTTTGGATTTTAAAAGTTGCTCTTGAGAACCTTGTGCTAAAATGACAGTGGAGAACCAGTTTAAATGTTTCATATCATCCATGTACCTGAACACTGACATATTGTTACAGTATTGCTGATACCACTCCAGATGTTCTTGCCTTAATGGTTATGatgtttattttcagtttctgtttttgggtgggtgggtaggtgggaGGGTTGGgtagaggagggggggggggggtggtctGATTTTCAGATGTGCTCCTCTACAATGTCTCCAGGCATATAGGGAGTGTTTTCACATTAATGTGAAGTGCatgttcatttttaatgcatATCCACTTTCATGAGCATCAACACTGGCATTGCACCAGACGCCCCATTTCTTATCCTGCAACGGTTTGCTACACACCTACACCCCACTGAGTGCGCAGAATGCAGGGAGCAGAGAGCCTGTGGTGtgtggatatgtgtgtgtgtgtgtgtggatgtgtgtgtgtggctgcgtgcatctgagtgagtgtgtaagcTGGACAGCTGTCACGTCAAGACCAGAGCCTTAGTATAAAATCTTGcacaatttgtaaaaaaaattaacagaaaaaacaacaaaaaaaacattgtatttaaGGCACAGCGTCTTGTTTATACTTTCCCGACATTTGCTCTCTACTGATTGTTTTGATTAACTTACTTTTTTCTCTTGTGgccattttaatatttattatgtatttttttgtatattatagGTAGATAGTGTGTAAGTTTGTGAGTCTTTCATTTTGAAGTCCCGGACGTGAGTACTGTTTAAGTTAGGATTGCATTTGCTGAAAGTTAACTGTGTAATCTGTTGcttacatttttgaaaataaaattttacattttgcaaA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84290 lncRNA downstream 92692 6757929 ~ 6758476 (-) True G62505
XR_002650187.1 lncRNA downstream 113130 6736583 ~ 6738038 (-) True LOC111192939
TU84282 lncRNA downstream 122166 6727874 ~ 6729002 (-) False LOC111192938
TU84267 lncRNA downstream 138288 6712063 ~ 6712880 (-) True G62492
TU84261 lncRNA downstream 152554 6695658 ~ 6698614 (-) True G62486
TU84352 lncRNA upstream 246567 7102075 ~ 7102306 (-) True G62558
TU84377 lncRNA upstream 378695 7234203 ~ 7234439 (-) True G62582
TU84380 lncRNA upstream 381683 7237191 ~ 7240299 (-) True G62584
TU84390 lncRNA upstream 487757 7343265 ~ 7343499 (-) True G62592
XR_002650151.1 lncRNA upstream 489416 7344924 ~ 7371665 (-) True LOC111192869
XM_022671168.1 mRNA downstream 114594 6735157 ~ 6736574 (-) True LOC111192905
XM_022671278.1 mRNA downstream 118043 6728749 ~ 6733125 (-) True LOC111192938
XM_022671275.1 mRNA downstream 155779 6633010 ~ 6695389 (-) True pphln1
XM_022671282.1 mRNA upstream 3330 6858838 ~ 6859670 (-) True LOC111192940
XM_022671283.1 mRNA upstream 75655 6931163 ~ 6955225 (-) True LOC103043330
XM_022671284.1 mRNA upstream 75655 6931163 ~ 6946501 (-) False LOC103043330
XM_022671287.1 mRNA upstream 606319 7461827 ~ 7533411 (-) True tfec
XM_007252722.3 mRNA upstream 697757 7553265 ~ 7602288 (-) True utp20
TU84255 other downstream 113220 6671610 ~ 6737948 (-) False G62484
TU84254 other downstream 113220 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 127638 6722102 ~ 6723530 (-) True LOC111192868
XR_002650186.1 other downstream 155784 6633010 ~ 6695384 (-) False pphln1
TU84110 other downstream 476188 6374469 ~ 6374980 (-) True G62377
TU84600 other upstream 1311170 8166678 ~ 8173802 (-) False LOC111192870
TU85152 other upstream 2763153 9618661 ~ 9622788 (-) True G63104
TU85294 other upstream 3459291 10314799 ~ 10411231 (-) False G63217
TU85708 other upstream 5465047 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 7929813 14785321 ~ 14786149 (-) True G64034

Expression Profile