RNA id: XM_022671292.1


Basic Information

Item Value
RNA id XM_022671292.1
length 4278
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC103021322
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7820355 ~ 7921224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATGGGCCAGATGAAGGTGAGCATGGCCATGAGTGAGTCATCCTCCATACATAGCGACCGGCTATACAGCATAGCCAGGGAACTTTCTGGAATGGGATTTGATCCGGTCAACTATACCTTTGATGACCCTTACACCTTCATCGAGGACCGACGACGTTCTGTGGTCAACAACTTCATGGACCCGGGGCACGAGCCCGGCAAAGGGCTTTACTTTGCCGACGGGAAAAGGAAAGTGGACTATGTGCTGGTCTACCAGTACCGGCGGCCGTCCTCAGTCCACGACTCACCTGGCCAGCACCGGCTCTCCGTCATCTCCAATGGCAGCTTCCCCCGAGTGGGCAGCAAAGAGCCCGAGGGGGTCAAGGAAGAGCATGCGGAGGTGGTGCTGGACGTGGGACCTGCTGACCCGGCTGAGGGAGAAAAGCTCATGATCCGAGAGGAATTTGAGGCGAACCTGAGGGAGGCTGGACTGGAGATGGAGCGGGACAATGAGCATAAGGTCCATGGTCAGGGCTTTATCCGGGTACACGCTCCCTGGCAAGTTCTGAGCAGAGAAGCAGAGTTCCTCAAGATCAAGGTGCCCACAAAAAAGAGCTATGAGCTGAAAGAGGAGAAGGGTCTGTCGGGCACGATGAGCACGATATGGAGGAAGATGAACCAGCCATTCCAGCCTAAAGTTCCCAACCTGCAGGATCAGAGCCGCACCAAGTACCTATCACACAGCTTCTCCCGGGACAAGCTCCACCTGTACAACATCGAGTCCAAGGACACGTTCTTCGACAATGCCACCAGGAGCCGTATCGTGTATGAAATCCTCAGACGTACCGCCTGCACGCGGACCTGCCAAACCATGGGTATCACCACACTCATAGCTAAAGGAGTGTACGATTCCGCCTTTCCCCTGCACGATGGAGACTTCAAGGGAGAAAATCATAATGTGCAATCAGAAGACAAGAATGACAGACAGCTCTTACATGATGAGTGGGCAAGATATGGAGCATTTTACAAATATCAACCCGTTGACTTAATCAGGAAGTACTTTGGGGAGAAGATCGGCCTGTACTTCGCCTGGCTGGGTGTCTACACTCAGCTGCTGGCCCTGGCCTCGTTGGTGGGCATCATCGTTTTCCTGTACGGCTGCTTTACCATCGACTCCAATGTGCCCAGTCTGGAGATGTGTGATGAGAAGCAGAACTTCACCATGTGCCCGCTGTGCGACCGAGCCTGCGAATACTGGCACCTGAGCACAGCCTGTGGCACTGCCCGTGCCAGCCATCTCTTTGACAACCCGGCCACGGTCTTCTTTGCCATATTCATGTCCCTCTGGGCGGTCATGTTTCTGGAGCACTGGAAGCGAAGGCAGAACAGTCTAAACTACAGCTGGAATATGACAGGAATGGAGGAGGAAGAGGAGCACCCCAGACCTAAATACGAGACCATCCTGCTTCAGAAGAggcagaggaagagaagaagcagaaagaagaaCAAAAGTGAGccTGGGGATGAAAAGCTAACATGGAAGGATCGGATGCCTGGATATTTCATTAACATCTCCTCCATTTTATTAATGTTTGGAGTGACTTTCGCTGCTGTGTTTGGAGTCATTATGTACCGCATCACTGTCTCTGCCCTGTTGGCCATGAGCCCAGACGCCCAGATCAAGTCCAACGTGCGGGTGACCGTCACAGCCACGGCCGTCATCATCAACCTGGTGGTCATTCTCATCCTGGACGAGATCTACGGCTCTGTGGCTGTCTGGCTCACTGAGCTGGAGATCCCGAAGACAGAGACTAACTTTGAGGAGCGTCTCATCCTGAAAGCCTTCCTCCTGAAGTTCATGAATGCATACGCTCCCATTTTTTATGTGGCCTTCTTCAAAGGGAGGTTTGCTGGCCGGCCTGGGGACTACGTTTACATTTTCAATGATTACCGTATGGAAGAGTGTGCTCCTGGAGGCTGTCTCATAGAGTTATGCATTCAGCTCAGCATCATCATGTTGGGGAAGCAGCTCATTCAGAACAACGTCTTTGAGATAGCCATCCCGAAGCTGAAGAAACTCTTCCGCACGATAAAGGAGAAGAAGATGATCCCGGAGGAGCGAGAAGAACAGGCGGGCCGAACTCTGCGCCAGTGGCACCTGGATTACAACCTGGAGCCCTTTGATGGTCTCACACCTGAATACATGGAGATGATCATACAGTTTGGCTTCGTCTCCCTCTTTGTGGCCTCCTTCCCCCTGGCTCCACTCTTCGCTCTCCTGAACAACGTCATCGAGATCCGATTGGATGCTAAGAAGTTTGTCACTGAGCTGCGCAGGCCAGATGCAGTGAGAGCGAAAGATATCGGAATCTGGTACAACATCCTGAGCGGCATGGGCAAGTTTTCAGTCATCATCAACgCTTTTGTCATCTCCTTTACATCAGACTTTATTCCACGACTGGTTTATCAGTACATGTACAGTGAGACCGGCACCATGCACGGCTTCATCGACCACACCCTGTCCTACTTCAACGTTAGCCATTTCAAAGAAGGCACAGCGCCTTCTGGCTCCACCATCACAGTCTGCAGGTACAAGGACTACAGAGAACCTCCCTGGTCAGGGACGCCATACCAGTTCTCCAAACACTACTGGTCAGTTCTGGCAGCTCGACTGGCCTTCGTCATACTCTTCCAGAACCTGGTGATGTTTATGGGCCTTCTGGTGGCCTGGGTGATCCCAGACGTGCCCAAGAACATCAGCGAGCAGCTGAAGAGGGAGAAGACGCTGCTGGTGGACGTCTTCATGAACGAGGAGAAGGAGAAACTTCAGCTCATCCAGAGTCTCTTCTCCAAAGAAGCCCCCCAGCCCCGACAGCCGCAGATACAACAGTCCTCGCTGCCACAAGACGCCTCGGAACCACGGCTTCCCCTCCCAAACCTGACCCAGACCGGCGATACCACAGATGTCGGAGCCAGCATCCCGTTATCCAGCCGCTTCCGTACCCGCCCTCGCGCCGCCAGCTTCAGCCAGTTCACCCGCCAGGCCTCCATGTCACCGCGCAGTGATGCGGGCAGGCACACGGCCGTGTGAGCTTGGGACGGGGGGAGGGGTCAGCCAGGCCAAGCGGTCTTCAGAGTGCCCAGAGCGCTGGGAGTGGAGGACGGAGGTCCATTAAGTTTCTTTAATGTGGGCGGGGCATGGCACCCTCTATGCAGTGTTTTCTCACTGGAGCAAAAGCAAGAGAGGTCATTATTTATCTAATCCCTGTACTGTAATGTCTGAAGCATATGTCCACGGGCGGCGtgttggatttttattttttattttttaatgttttgttttttgacatGCCCTCCCAGTCTGCGGAGGAGTCAAACTCATCCCAGCCGCCGGGCAGAAGCTTCGTAGGATGGCTTGCAGTCATTCCATGCACAGTTGATGCAGACACTGGAGTAGAAAATGGGATTCTGTGGGATTCAGTCTCTTGTCCAAGAGGGCCTCTCGCACatttttatggatttttttttttttcccatctgtTCTTGAACTAAGAGGAAGATGTTTTTATGTTCCATTTTTTGCACaactcaaaaactcaaaaactctAGTGCACATCGGGCCCTGCTCATGCGGTCATTGCACAATTTGTGAAACTGCACAAATCACAAACTGCTTTGCAAAATTTGATGAGATGTAGCGTATCGCAGCAAATAATTATAACCTTTCATTTTCTCAGGTAACGACATCACTGtaggttttatttgtttatctgaaTAATGTGACATCTCTTGGTTTAATAGAGAGTACGAAACTTGTCAGTCAATAAGGAGTTAAGAAACAAACAACTTGTAATTTAATGCACAAATTGTATTGTACAATAATCAATACATAAATCAAAATGAGTGTCAAATCTTGTTAatgattctctctctttctctatctctcgctGTGAAAAAATGCAAATCAGTCCATAATTAGTTCAGTTTGCTTGTTGGAGACTAGGggtttgggaaaaaaatatcacatttgTTACACTACAATTTGGACAAAACATATTTCAGTAAGTCAAGAAACATGCAAGAACAGAAAAATCACAAACGCATTAAAACTGGATTCCTTTTCCTTTTATCTCAGCTGGAGCTAAGCTTAGCAGGGTGTGTTGTTACTTGCTAATAGCTTACAGTTTAAGGCAGCGGTTCccaaacgttttttttcttaaaaagacCCACCTGTATCCACTTTCACTCAGTATACTGTTcttttataaacaataaaattgaTGAGATTGTGAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84523 lncRNA upstream 33487 7770742 ~ 7786868 (+) True G62685
TU84477 lncRNA upstream 200959 7617543 ~ 7619396 (+) True G62656
TU84453 lncRNA upstream 218088 7598566 ~ 7602267 (+) True G62644
TU84431 lncRNA upstream 261545 7556771 ~ 7558810 (+) True G62628
TU84423 lncRNA upstream 274645 7545388 ~ 7545710 (+) True G62623
TU84550 lncRNA downstream 28614 7949838 ~ 7951452 (+) True G62710
XR_001518662.2 lncRNA downstream 449539 8370763 ~ 8374695 (+) True LOC107197604
TU84651 lncRNA downstream 483463 8404687 ~ 8415039 (+) False rab19
TU84678 lncRNA downstream 512512 8433736 ~ 8434382 (+) True G62807
TU84681 lncRNA downstream 530268 8451492 ~ 8455911 (+) True G62810
XM_015606733.2 mRNA upstream 50112 7766846 ~ 7770243 (+) True smkr1
XM_022671169.1 mRNA upstream 57232 7703112 ~ 7763123 (+) True LOC103023836
XM_007252726.3 mRNA upstream 132808 7633393 ~ 7687547 (+) True ahcyl2
XM_007229829.3 mRNA downstream 480616 8401840 ~ 8415039 (+) True rab19
XM_007229832.3 mRNA downstream 507328 8428552 ~ 8431990 (+) True ckap4
XM_015605601.2 mRNA downstream 589291 8510515 ~ 8516534 (+) True LOC107197608
XM_015605602.2 mRNA downstream 596756 8517980 ~ 8525037 (+) True LOC103044524
XM_022671304.1 mRNA downstream 604994 8526218 ~ 8536561 (+) False LOC103041471
TU84211 other upstream 964593 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 1826361 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 2066071 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 4516357 3296546 ~ 3303998 (+) True G61575
TU84764 other downstream 611535 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 612124 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 1512213 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 1725355 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 4546826 12468050 ~ 12468902 (+) True G63432

Expression Profile