RNA id: XM_007256032.3


Basic Information

Item Value
RNA id XM_007256032.3
length 9442
RNA type mRNA
GC content 0.48
exon number 23
gene id lrp6
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23020384 ~ 23085044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACCAGACCATTCCGTGAAAAACTAGTCCCGTCGGAATGTGTTTCCCATGCTTTAAAACAAGCGGGCTGAACGCACGGGTCCCGCGCTTTGGCTGAAATTCCACACTGTCGGTTACTGCACAGACGGGCGGCTGAGGTCCGgtgtctgtgtttttaagaTAAACCTCGTATCTGACTCGGGACACTCCAGTACAAACAATAGACAGCGGTCGGGTGATTTCAGGGAGCATTTCCTGCTGGCGGAAGGACACGGCTCGAGAGGCGGCGAGTGGCTGCGCTCCGGCGGCAGGATTTTTCGTGGAGGGGGGAAATCGTAGCGCCGCTGAAGCTcgagagaggaaagaaagaatgGAGCGGAGAAAACCCGCGGCCCCGGTGGCTTTATAACAGCACTTCCAGCTGAAGTCTCTTACCCTAAACCCTCGAATCACTTCTGCGCGGGCAGCAGGACACAGCCATGCGAGCCCCGCGCTGAAATCCGGCCGCAGAGAGGAGCAGAGGCGAGAGAACGGGGGAAAGATGGGCGCCGTGCTGCGGAGTCTCTTTTTGTGTAGTTTCTGTTTGCAAATACGGGcTGTGCCGCTTCTCCTGTATGCAAACCGGCGTGACCTGCGGTTGGTGGACGCCGCTCATGGGCGTGGGAACGCCACGGTGGTGGTGAGTGGCCTGGAGGATGCAGCTGCCGTGGATTTTGATTACACCCAGGGACTGGTCTACTGGAGTGACGTGAGTGAGGAGGCAATCAAGTGCACCGTCTTAAACGCCTCCGGCCCCAGCGGTATCCAGACCACCGTGGTGTCCGGCCTGGCCTCTCCCGATGGTCTGGCTTGCGACTGGTTGGGAAATAAGCTTTACTGGACGGACTCAGAAACCAACCGAATAGAAGTGTCAGAATTTGATGGATCTTATCGGAAAGTTTTGTTTTGGGAAGGCCTCGATCAGCCAAGAGCAATTGCGTTGGATCCGTGCAGAGGGTATATGTACTGGACAGACTGGGGTGAGATCCCGAAGATTGAGAGAGCGGGTATGGACGGCACAAATCGAGCCATTATCATCGACACTGACATCTACTGGCCCAATGGACTCACTTTGGATTACAGTCAGCAGAAACTATACTGGGCTGATGCCaagtttaattttattcacCGCTCAAACCTGGATGGCACAGGAAGAGAGGTGGTGGTGAAGGGCTCGCTTCCACACCCTTTTGCTCTGACACTGTACGAGGACACACTCTTCTGGACGGACTGGAACACACACTCCATCCACTCCTGCAATAAACATACGGGGGAAGAGCGCCGTGAGATCCATTCCAACATCTTCTCACCTATGGACATCCATGTCTTCAGCCAGAAGAGACAGCCTATTGATGTGAGCACTCCCTGCTCTCCGAAGAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCTCCAGTAAAGCCCTTCTATCAGTGTGCTTGTCCCACTGGCGTGGAGCTGCTAGAGGACAATAAGACCTGCCGCATTGGTGCCACACAGCTCCTCCTCTTAGCTCGTCGAACAGACCTGCGTCGGATCTCTTTGGACACGCCAGACTTCACTGACATAGTCCTGCATGCAGAGGACATCAGACATGCTATTGCCATTGACTATGATCCTGTGGACGGACACATCTACTGGACTGACGATGAGGTGCAGGCCATCCGCAGGTCTCATCTGGATGGCAGTGATGCTCAGTTTATTGTCACCACTCAGGTGAATCATCCAGATGGCATTGCTGTTGACTGGATAGCACGGAATCTCTATTGGACAGACACTGGTACAGATCGCATCGAGGTCACAAGACTAAACGGCACAATGAGGAAAATTTTGATATCTGAAGACCTGGATGAGCCAAGAGCCATTGTTCTGGATCCTGTTTCAGGgtatatgtactGGACTGACTGGGGAGAATTTCCAAAGATTGAGCGTGCTGCCCTGGATGGTACAGATCGGGAGGTGATGGTAAACACTTCCCTTGGTTGGCCGAATGGACTGGCACTAGACTACGCAGAGAGGAAGATATACTGGGGGGATGCAAAGACTGATAAGATTGAGgtGATGAATATGAATGGAACAAACCGGAGAATCTTGGTTGAGGACAAACTCCCTCACATATTTGGTTTTACTCTCCTCGGTGACTACATCTACTGGACGGACTGGCAGCTCCGAAGTATTGAACGTGTGCATAAACATACAGCCGAAAGGGAAGTGATCGTTGACCAACTACCTGACCTCATGGGCCTGAAAGCCACCTATGTACACCAGACATTTGGTACCAATCCGTGTGCTGAAAATAACGGCGGCTGCAGTCACCTATGCCTCTACAAGCCGCAGGGTGTGGCGTGTGCGTGCCCTATTGGCCTAGAGCTCATTTCTGACATGAGCACCTGCATTGTGCCCGAGGCCTTCCTGCTCTTTTCCCGGCACACTGACATCAGGCGGATCTCCCTGgaaaccaacaacaacaacgtGGCCATCCCACTGACTGGCGTCAAGGAAGCATCGGCTTTGGACTTCGATGTCACTGACAACCGCATCTACTGGACTGACATCACACTAAAGACCATCAGCCGGGCGTTCATGAACGGCAGTGCACTGGAGCACGTGGTGGAGTTCGGCCTGGACTACCCTGAAGGGATGGCGGTGGACTGGCTTGGCAAGAACCTGTACTGGGCAGATACGGGTACCAACCGCATAGAGGTGGCCAAGCTGGATGGTCAGCACAGGCAGGTCCTAGTGTGGAAGGACCTCGATAGCCCACGTGCGCTGGCTCTGGACCCTGCTGAAGGTTTCATGTATTGGACTGAATGGGGCGGGAGGCCTAAGATTGACAGAGCAGCCATGGATGGCACAGGCCGCATAACTTTGGTCCCCAATGTAGGCCGTGCCAATGGACTTACCATCGATTATGCAGAAAGACGACTCTACTGGACTGACCTGGACACTACACTCATTGAATCGTCCAATATGCTTGGTCTTGAGCGTGAAGTGATCGCAGATGACCTGCCTCACCCATTTGGCCTCACGCAGTACCAGGACTACATCTACTGGACTGACTGGAGCCAGCGCAGCATTGAACGGGCCAACAAGACCAGTGGTCAGAACCGCACGCTCATACAAGGCCATTTGGACTACGTGATGGACATCCTGGTGTTCCACTCATCACGGCAGGGTGGGTGGAACGCCTGTGCATCCACCAATGGCCACTGCTCCCACCTCTGCCTTGCTGTGCCTGTTAGCAGCTATGTGTGTGGATGTCCAGCACACTACTCCCTCAATAATGACAACAAGACCTGTAGTGcacCCACCTCCTTTCTGCTGTTTAGTCAGAAGACTGCTATTAACCGCATGGTGATGGATGAACAACAGAGCCCGGACATCATCTTGCCAATTCACAGCCTGCGTAATGTCCGTGCCATTGACTATGATCCACTTGACAAGCAGCTCTACTGGATTGACTCCAAGCAAAATGTCATTCGTCGTGCCCAGGAGAATGGCAATCAGAGTATGACTGTGGTGTCTAATTCAGTGGGAGGCCACAACTTGGGTCTGCAGCCATTCGACCTGAGTATTGACATCTACAGTCGTTTCATCTACTGGACCAGCGAGGTCACCAACGTCATTAATGTTACCCGCATTAATGGCACGCGTGTGGGAGTGGTCCTTCGCGGTGAGCACGACAAACCCAGAGCAATCGTGGTCAACCCAGAGAGAGGGTACATGTACTTCACCAACCTGCAGGAACGATCTCCTAAGATCGAGCGGGCAGCTCTGGATGGCACTGAGCGGGAGGTGCTTTTCTTCACTGGCCTGAGCAAACCTGTTTCCCTGGCTATTGATAACGAGCTGGGAAAGCTGTTCTGGGTGGACATGGACCTACGGCGCATTGAGAGCAGTGACCTATCTGGGGCCAATCGAATTGTGATCGAGGACTCGAACATCTTGCAGCCAGTTGGCTTGACAGTCTTTGGAGATCACCTGTACTGGATTGACCGGCAGCAGCAGATGATCGAGCGGATTGACAAGACTACACGTGAAGGCCGAACAAAGATCCAAGCCCGCATCTCTGCTCTGACAGACATCCATGCTGTTCATGAGATTGACATGGAAGAATACAACAAACATCCCTGTACCTCTGACAATGGAGGCTGCTCCCATATCTGCATTGTAAAGGGAGATGGTACTACAAGCTGCTCCTGCCCTGTTCACTTGGTCCTGTTACAAGATGAGCTTTCTTGTGGAGAACCGCCCACCTGTTCACCAGTGCAGTTCCCATGTGCATCTGGAGAGGTGGTCTGCATCCCACAGGCATGGCGCTGTGATGGGTTCGCCGAGTGTGATGACGAAAGTGATGAGCGTGGCTGCCCTGTTTGCTCAGAAGAGGAGTTTCAGTGTGACAGCAAGCAGTGTGTGGACATCTCGCTGCGCTGCAATGGAGACATTAACTGCCAGGACCGCTCAGATGAGAACAAGTGTGAAGGTCATTGCCCTCCAGACCAGTTCGCCTGTAACAGTGGCCAGTGCATCGGCAAGCATAAAAAGTGTGACCACAACATGGACTGCACCGATAACTCTGATGAAATTGGCTGCTACCCCACTGATGAACCTTCACCGCAGCCCACCAACACTATCGGCTCCATTGTTGGTGTTGTGATGACCTTGTTTGTGGTGGGTGCAGTCTACTTTGTGTGCCAGCGTGTGCTGTGCCCACAGATGACCGATGACGGAGAGACCATGACCAATGACTTTGTAGTGCACGGACCGTCCTCTGTGCCGCTGGGATATGTGCCACATCCCAGCTCCCTTTCTGGCTCTCTGCCGGGTATGTCTCGTGGAAAGTCTGTGATAGGCTCATTGAGTATAATGGGTGGTAGCAGTGGACCTCCTTATGATCGTGCCCATGTAACAGGAGCttcctccagcagctcctccagcaCCAAGGGCACTTACTTTCCCCCTATCCTGAACCCTCCCCCTTCTCCTGCTACAGTGCGATCTCAGTACACAATGGAGTTTGGCTACTCGTCCAACAGTCCCTCAACACATCGCTCATACAGCTATAGGCCATACAGCTACCGCCACTTCGCCCCTCCAACCACAccgtgcagcacagatgtgtGTGACAGCGATTACACACCGGGACGCCGGGCCCCACCAGTCTCCAGCACTGCGGCAAAGGGCTACACCAGCGACCTCAACTATGACTCTGAGCCCTTTCCTCCACCCCCCACCCCGCGCAGCCAGTACCTCTCAGCCGAGGAGAACTGCGAGAGCTGCCCTCCGTCTCCTTACACAGAGCGCAGTTACTCACACCACCTGTACCCCCCGCCCCCCTCACCCTGCACAGACTCATCGTGAGCCTCGCTGGTCATGTGCAGAACCCAGCTCATCCTCCCTGTTGGTGTAAATAGCAATTGTGCATAAAATGACTTCAAAAAGAAAGTGACTGATGCTTGAGCTGGAAGACTGTTCTGTGCCGAGAAAGAAATAGTaggagaataaaaataataggagGATGAAAGAAAAGATACTTGTGTGCAGAGCGGACATCcttgtacattaaaaaaaaaacatatttatatattttctatacagCGTTTATTGGTAATGCCATAGAGCTTTGTATTATTAAAagaaatttgtacattttttaaggaaatttttattaaattcacACAAACATTGATATGTTGCCTTAAATCCAAGAGTTCGAAAATCAAACTACCTTCTCTTTTGAGGCTGAAGGATGTGGGAAAGGAGTGCGGGTGGTTAACTTCTGATGCCAAATAACACTAGTTTCGCCATCCTGCTTCACATCTCAGGGACAGGATGGAGATGGAAGGAGAATGACACCCCCTGATGGCTCTCACTGGTACTACACTGGGCAGCTCTGTTGCTGTGCAGCCATTTTGTTTCAAGCTGAACCACTAGCTCTTCTAATCACCCaccacctggagctctcctctGCGCTGAAAGGAGGGAAAACCTCTGTGTCTGTTTTTCGTCTTggtttttatttctgcatttatggCAGGGCAGTGTGTCACAGCGCTGGAAATATTGGATTTGATTGAAAAGCTATCAGAACTGTAGCAATAAGAAGAGGACAGACTGTGTTGAAGCTGAAAGTTGCAGCTGCTGTCGATTGATCTCTAGCGCTCAATGCTCCTAAGAGTGAGGCAGTGACTTCATTTTGGCTCTAGCAGCTCCAGAGTTCCCAGCGTGTTTGCCATGTTAGTGGGAGTTTGGGTGATGTACCACCAGTTCTGTGTGGACTTATGTTTCTATGGTCTTGAGCAATCAACcaaaagtttttgttttttttttttccttcatgttTCCTTCCTTTTCCTAACATGCCTGACTGCAACTGTACAGGAGTCTGTGCAGGACACAATCTGAAACacatctctctatctatctctctctcgctctctctctctatctctctttcacgctcgatctctttttctctcatcaTATCGttctctctcacctctctccAATATTTCACTCTCCACCTTTCTTCTCTTACCATCTTATTCTCTCCCCTGCCCCCATATCTTTTCTGTCTCATCCTTTACAAAAGTACACAATCAAGGACAAGCTTATCGTGCCTGACCACTTTCTAACAAACTCTTTTCAAATCGCATTGCATCTCTTTTTTAGAAATCTTAGTGTGcgcaaaatgtcaaaatatttttgtaccACATATTGTGTAGATACCATATTTATAAGCTATAAAGACTGAAAACCATTGTTATTTTCTTGTGATATCCTTGCAGTACTTTTACCATTATGCCATTAGCTCTCAATATATGCCTTGCTGTATTTTTCTATTAACCGTTATGACCTGAAAGTACAGTGACAATCCACGAGGAACAAAAGCCGAAGAACATAACTATATGAATGTCCCTGTTCAGATATCTCAAACTGTCCAGTCCAGAAACCCAGTTACAGATTCTTAAATCAGAGGCCTCCAGTCTTTATGTACCTGCAGTTCTAGCCAAGCGTTCAGTATATGATCAGAATGTTTAAGGTGGGATCAACACTACTTTTGTGAATGTGATCCGAACATTAGGGTCTTTTTTTAAGGATGATTGTTTGTCTGCTTGAAGTTTTCAGTGGAGTTTGTTAGGGTCGTTCTGTACTGATGCGCACCTGGTAGATTTGCAGCCCTGTTCTTTGAGTATGGTGGTCGTCTGATTTGTGGTGTTTGTCTTTATGTCAGTGATTTTGCCCTTTCCCGTTCTCAGGCGAGGGACGCGCACCAGCGTGAATATTCGTGATCGTTCTTGGTGTATTATAAAATGTTGCTCTGTAGCTGCTTTTTACGCCTCTGTGGGCCAGTTTAGGGGTTTTGATTAGACTGCAGACAAACATTTAATGTTACAGGCACATGAGTGGACAATCAACACACTTACTTTAGGCTGGATTGTGCCTAGGGTCTGATGCCATTTTAGCTTTACCTATTTTTAAAGGGTATTTGCaccgtttttgttttttggagttttttttttatcttctatgACAAAGTTACTGTGAGGAATTAGTTGAGAAAGTGTATTGGAGAaaaatttgcttttttaactgtGGTAGCGAGAGGTGCCAAAGGGGTTCATGATTTAcgccaatttaaatattttatttcatttccaaAACCTCCAGTGAAGCTGCTTGTGTCTACAAATGTTCCTATGGAAATTAAAACAGCagttaatttgaaaaaaaaaaaattgttcttaAGAAATGTTTGAAAAAACTTGTCCTTTGCTTAACACCCAGCTTGTAGTCCACCATTATTTTAGGGCAAAATGTTAATGGAAAGGTTAacagaaaattgtaaaaaagtTGTAATTCCCCTTTAATGCAGAACAAAGTGTTaatgtattgtgtatatatatgaggGATTTTTGCTTATCTCCTGAACCGGTAAACTTATCATTCAGATATTAATCTCAAAGCCTATTTAGTAACTTCCATGGAAATTGAACTAGTACCTAATTTATGTGATTCTTCACCTGTGGAGTTGTAGTGTGGACCTGCTGATGGAGCCTTATAGGgcagtttctcagacagggattaaacctaCTTTTGGAGTACTCGGCATTCTAAATAGAGATTTTCCAAAAAGGAAAACAGTCTGTGACTAGGCCTAATGCTTGCTTGGGAAACTGACCGTAGGTCCTTTAGAGTTTAGGAGGCTAAGCTAGACTCTTGAAGATTGACTAACATCCACTCGATTGTGTTCCTCATTTGCGTCCAAAAAgctttgtgtgtctgtatagAAGTCAGCTGATTTGGTTTCTAATCAACGTCTACAGGCTGTGCGCGTCCATCATCTGCTGGATGTTTGCAAAGAAATCAGTACAATCTCAATCACACTGCTGCCTTCCCTTTGCCTAGCCTTCACTGCGTTCACTGTGACCCCTGAACAGAATCTAAAGCAGCATGTAAGACATTTAGACGGCCTGACTCTGATTTCCtacagtttgtttgttgttttgtttttgtttgtttgttttatatataaaaatctattCTCCGTTATGTAAGAGGTTTAGGACGGTTTCCTATCTGCCGCTGGTCATGTAGCCAGCAATCATCAGGTCAAACCAGCATCATCTCATTCTCCTACTGCACTTTACAGCACCTCGGCCTGGTTACTGGTACGACAGCATGCTTACCTGAAAACACTGTGTGAATGTATGAGCGCCTCTGTATCTGTGTGAATGGGGGGAGGTGTTTAGGGGGGAACGTTCTCTAAAGAATGGATGTGTATTTTGCTGCCATTGTAGCTtgcttgtatttttgtgtagcaaaatgtggttttaaaaatctaaattgagGAGCTACCAAAGGTATGAAACACTAGTGTGACCAGACTCTGCCATTTCACCTCACTTTACACGCTTCATCTGCattgaagcagcagcagcagccttttCTCCATGttcctgtttctttaactaAAGGCCATCAGGCCACGTTTCACTGCTTAGAGAGGAGGAGCAGGATCTGAATGAAATCCTGTGATTGAAATGCAGCAGTGATAAAAGGAGAAAAAGCAAGTTTGCATAGACAGGTAGAATATTAAGCACTTTGGCTCCTGGGCAGAGAATGATGGTGGGAAGAGAGGGAGGGGCCTGTTAACAatgtacacttttttttttttttgtcgttcATCGTTTGTCTTATTTTTGATACCATGGTGCTTTGCAAGGATATATTCAAAGATGACCAACATTTGGTTAGTCACAGTTCATTAAATTCCACTAACTCTACTTTTTGTACATCGATCACTTTACATGTAAAACTTTGTATAAAATGGACATGTACAGCTCATTCGATAACTACTATAAGCTGTTGTAACAAatgaaatgttgattttttttttttttaataaaaatgagtgGATTTTTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03068 LRP5_6; low density lipoprotein receptor-related protein 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89218 lncRNA upstream 51081 22963871 ~ 22969303 (+) True G66143
TU89219 lncRNA upstream 57542 22958441 ~ 22962842 (+) True G66144
TU89215 lncRNA upstream 64950 22954277 ~ 22955434 (+) True G66140
TU89135 lncRNA upstream 700836 22318843 ~ 22319548 (+) True G66062
TU89127 lncRNA upstream 736312 22283434 ~ 22284072 (+) True G66056
TU89293 lncRNA downstream 22842 23107886 ~ 23204707 (+) True G66183
TU89320 lncRNA downstream 99313 23184357 ~ 23189666 (+) True G66201
TU89345 lncRNA downstream 140986 23226030 ~ 23226867 (+) True G66207
TU89331 lncRNA downstream 231840 23316884 ~ 23323096 (+) False eps8
TU89343 lncRNA downstream 231840 23316884 ~ 23323361 (+) False eps8
XM_015607538.2 mRNA upstream 7611 23004755 ~ 23012773 (+) False LOC103025638
XM_007256033.3 mRNA upstream 7611 23006933 ~ 23012773 (+) False LOC103025638
XM_022671535.1 mRNA upstream 7611 23007458 ~ 23012773 (+) True LOC103025638
XM_007256034.3 mRNA upstream 16916 23000002 ~ 23003468 (+) False c7h11orf98
XM_022671534.1 mRNA upstream 71185 22939555 ~ 22949199 (+) True ccdc167
XM_007256029.3 mRNA downstream 46036 23131080 ~ 23138011 (+) True crebl2
XM_022671544.1 mRNA downstream 137470 23222514 ~ 23320960 (+) False eps8
XM_022671538.1 mRNA downstream 137471 23222515 ~ 23323116 (+) True eps8
XM_022671537.1 mRNA downstream 137471 23222515 ~ 23323116 (+) False eps8
XM_022671540.1 mRNA downstream 137471 23222515 ~ 23323116 (+) False eps8
TU89229 other upstream 16963 22999370 ~ 23003421 (+) True c7h11orf98
TU89211 other upstream 71192 22939602 ~ 22949192 (+) False ccdc167
TU88777 other upstream 1335550 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 1995810 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 2062749 20957135 ~ 20957635 (+) True G65565
TU89299 other downstream 46050 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 46050 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 359130 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 398289 23483333 ~ 23483933 (+) True G66303
TU89518 other downstream 613108 23698152 ~ 23710076 (+) False LOC103027234

Expression Profile