RNA id: XM_007259741.3


Basic Information

Item Value
RNA id XM_007259741.3
length 2148
RNA type mRNA
GC content 0.49
exon number 10
gene id wif1
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2614208 ~ 2642104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGCAGACATTTCAGTCTGTCAATCCCAGAGGCGGTGACGATACATTTAAACCGGGATTTCAGCGCGAGGAGGGACACGTTAAACCCGGCTCTTCACTCAGCATCCAGAGGGGTCGTTCGAAATGGCTCGGGGGTCTCCTGCTCTCCAGTCTTGCCTGAAAACTTACTTTTTTCTACTTTTGGGAGCTTTATCAGCCGGAGCTGCCCCCGAGCAGGGGAGCCTGTACATGTGGATTGATGCCAACCAGGCCAGGATACTGATAGGTTTCGAGGAGGATATCTTGATTGTGTCAGAAGGACAAATGGCCCCGTTCACACACGACTTTAAAAAAGCCCAGCAGCGCATGCCCGCCATACCTGTCCACATCCACCACGTGAACTTCACCTGGCAGGTCACTGATGATCAGGCCGAGTACTTCTACGAGTTCCAGTCTCTGCGCTCATTCGACAAGGAGATCATGGACGACCCCATCGTCAACGTACCGCTGCTGGGATCTGTCCCACACAAAGCTTCAGTGATTCAGGTAGGCTTCCCCTGCCGAGGCGACCAGGATGGGGTTGCAGCGTTTGAGGTCACTATCTTAGTGATGGATGGGGGTGGAAACATTATTCTGAGGACCCCACACAATGCCATCTTCTTCAAGACCTGCCAGAGAGcTAAGTGTCCTGGTGGCTGCAGGAATGGAGGATACTGCAATGAAAGACAAGTCTGCGAGTGTCAGGATGGCTTCTATGGAACACACTGCGAAAAAGCGCTGTGTTCACCAAGATGCCAGAACGGTGGTCTGTGTATGAGTCCAGGGGTCTGTATTTGTCCTCCTGGCTACTTTGGAGCCGGCTGTGAGAAAGctaactgcagcactacaTGTTTGAATGGGGGAACCTGTTTCCATCCTGGTAAATGTATTTGTCCTGCTGCATTTGAGGGCAGCCGCTGTGAAATAAGTAAATGCCGCCAGCCATGCAGAAATGGAGGCAAATGCATGGGGAGAAACAAATGCAAGTGCAGCAAGGGTTATCATGGAGATCTGTGCTCTAAAGctgtcTGCGAGCCCAGCTGTGGAGCACACGGGACATGCATAGAGCCCAACAGGTGCCACTGCAGGGACGGCTGGCACGGACGTCACTGCAATAAGAGGTACCGTGGTGGATTCCCTTTCATCCACCGCCCCACCATCTCCAGACCCAAGACCCAAGCCCCATCAGCAAAAGAAACCAAGGAGGCCTCTGATAATAACCAGCCCTCTGAGACCAACTACGTCGTTTAAGCTTCACACTCGCCCTCCTGGCACTCTCTGCCCCCTCCCGACCCAGCCTCCCAGGGGCCCGCTTCTCGTCCTCCCCCTTCAGATCCTCATCATCCGCCCTGGGatcctccctccatccctccgtgGACTTTTATTTTCATAGTCCATTCTCCGTATCCCCTTTCACAGTGTAAACTCCTTTGATAGAGTATCGCCCGGTTCGCAGCTCTGTCAGGTCCTTTCCCCTGCCCTGCAGATGCTGCGAGGGAGagaagggggtgggggggtgaggCAGTCACAGGCTGTTTTGTAATCCAGATTTGGCTGGAATTCAGCCTGTGATGTTTGTGAGCAGTCCTGAAGCTCAGCTGTAAATGTGGACATGAATCACAGGGAGTGCATTACAGTCCAGAGGCTCTTTTGTGTGGGCTTGACCTGACTGAGGAGGGTAATTACTGTCTTCAGCTCATGTTCATGGGTTGGCTCGCCTGTCCGGTTGGTTTCATCAACACTCACTTTCTCCTTCACACAGAGACAATGACTCAGTGGCTGAAGGTCTCTGAATAAGTACAGTTGAATTATGAGACTCTAGAACATTTATTCTGTAGTGTACACACCATGGGAagtggatacacacacacacacacacacatacacatatatatatatatatatatatatatatatatatatatatatttagttattatGATAAAGTAGGGTAGTTATTGCGTACTTTATTTACTCAAAGTTTTGATACTTAGTTGAGTTGTTGAAGGTATAACAATTCAGTTATACTTAATGAATAAGCTTCTTATTGCATCATAGACATAAGCAATTAATGGACTGTTATTTTCATCTGGGTGATTATACCACTCGAATAAAACCATCTCAATCATG

Function

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K01691 WIF1; WNT inhibitory factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82794 lncRNA upstream 25032 2588071 ~ 2589176 (+) True G61332
TU82796 lncRNA upstream 32576 2576279 ~ 2581632 (+) True G61334
TU82792 lncRNA upstream 39783 2573819 ~ 2574425 (+) True G61330
TU82779 lncRNA upstream 144724 2466510 ~ 2469484 (+) True G61320
TU82770 lncRNA upstream 152397 2454579 ~ 2461811 (+) True G61317
TU82850 lncRNA downstream 15814 2657918 ~ 2658139 (+) True G61370
TU82879 lncRNA downstream 209071 2851175 ~ 2931408 (+) True G61397
TU82883 lncRNA downstream 308577 2950681 ~ 2951094 (+) True G61401
TU83048 lncRNA downstream 602753 3244857 ~ 3245129 (+) True G61558
TU83050 lncRNA downstream 624204 3266308 ~ 3266887 (+) True G61560
XM_007259754.3 mRNA upstream 289948 2274367 ~ 2324260 (+) True lmo3
XM_007259753.3 mRNA upstream 289948 2277503 ~ 2324260 (+) False lmo3
XM_007259755.3 mRNA upstream 289948 2278943 ~ 2324260 (+) False lmo3
XM_022671219.1 mRNA upstream 289948 2284636 ~ 2324260 (+) False lmo3
XM_007259768.2 mRNA upstream 608962 2003842 ~ 2005246 (+) True tmem121b
XM_007259740.3 mRNA downstream 11501 2653605 ~ 2657494 (+) True LOC103029880
XM_007236662.3 mRNA downstream 625860 3267964 ~ 3292593 (+) True cand1
XM_022671229.1 mRNA downstream 700615 3342719 ~ 3373751 (+) False dyrk2
XM_007236657.3 mRNA downstream 719253 3361357 ~ 3373751 (+) True dyrk2
XM_007236658.3 mRNA downstream 719601 3361705 ~ 3373751 (+) False dyrk2
TU82609 other upstream 678709 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 792432 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 792873 1821248 ~ 1821335 (+) True trnay-gua_7
trnay-gua_6 other upstream 795607 1818514 ~ 1818601 (+) True trnay-gua_6
trnay-gua_5 other upstream 796053 1818068 ~ 1818155 (+) True trnay-gua_5
TU83070 other downstream 654442 3296546 ~ 3303998 (+) True G61575
TU83069 other downstream 656985 3299089 ~ 3303998 (+) False G61575
TU83815 other downstream 3104100 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 3340269 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 4209126 6851230 ~ 6855762 (+) True G62455

Expression Profile