RNA id: XM_022671242.1


Basic Information

Item Value
RNA id XM_022671242.1
length 1984
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC103031106
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3847043 ~ 3853727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAATGACTCTGGATTCACCCACACAGACATGGATCTGAGTGGTAAGGAGGGAAATCCACACTGCCTGGGCTCCGGCTGCCTGTAGCTGCGATACTTTACAGACAGTGACATGCAGGGAACAGAGGGAACATTAGGAGGTCCTGATGTCAGAAGGAGGATCCCCATCAAACTCCTTCCCAAACAGGCTCGAAAGAGCTTCGCTTATAAACAGGAGGAGAGGTTTGAGTTTGGGGCGAAGGCAGGAGATGCATTTGCAGGCCAGCGGCGGTACCCTCAGCAGTTCTACTGGGATTATAAGCTCAATCTGATTGGTGAGAGGGATGAGACCCCTGTGCACTTCTGTGACAAGTGCGGTCTGCCCATTAAGAGCTATGGTCGAATGATTCCTTGTAAGCATGTTTTCTGTTATGATTGTGCACTGCTTCACGAGAGGAAGGGTGATAAAATGTGCCCAGGTTTAACAATGTACAGCTGCACAGACCCAGTCCAGCGTATCGAGCAGTGTCAGCGAGGCTCACTCTTTATGTGCAGCATCGTTCAGGGCTGCAAGCGCACCTACCTCTCCCAGAGAGACCTGCAGGCGCACGTAAACCACCGCCACATGAGGCAGAGCAAGTCCTCATCAGGCCGCTCTGACCCTCTCCACCTTCCGGCTTCATCTGAGGTGTCGGACCGCTTCCGCGTGCCCCCTCCTCACCTGTCAAAACCTCATGTGCTCatccctccccctctctcacaCGTGGGTCATGACACTTACAATCAGCCACCTCCTGGGCCCCACGACGATCTCCGAACTCCACCAGGACAGCCTGGTGCTGACATGGGGTCATCTCGCGCTCTTGCTCAAGAGACCTTTCGCATTGCTACACTGACCACCAGGAAGCACAGCAACCTTATCACTGTCCCCATTCAGGACGATTCGACGAGCCCCATCCCCCGGGATCAGCTCCCCCAGTCTGCCAATGCCCCTCCTCCACACCACCACCCAGGAGATTATCCAGGACAGCCTGTTGTATCCCTCCCACACCACATGATGGTGCCACCGCAGCAGCGTTACGGTCCTCCACCTCCTCCGCCTCCCATCACTCATCCGATGCAACACCCATCCCAGGGCTCCAGCTCCCACATGGTCTTCAACCAAGCCCCGCCTCCACCTTTATCCTCAGTTCCACCTCCCATCACCCCACCTCCTGGACACCTCATGGGTCAACTGCCACCATACATGAGTCATCCTCCACCAGGCCCTCCTCCTCAACATGGCGGCCCACCAGTTAATGCCCCACCGCCTCACCATTACAACACCCAGTTTTCAGAGGACAAAGGCACTCTTAGCCCACCTTTCAACCAGCCAGGTGGGCTGAGTCCAGGGATGTGGCCTGCCCCGAGAGGACCCCCTCCCCCCAGAATGCAAGGCCCACCCCAGGGCCAAATGCCTGGACCCCATCATCCAGACCAGGGCCGCTACAGGCCGTATTACCAATAgaatgtttttgtttctctgaaCAGTGATCTCAAACACAATTCTGTGGTAAGGTTTCATAAGGCCTGTTGTACAGTTCAGTATAGATTTGGACTGCATATAAAAAGTTATGTAATTAATGTCAGACATTATAGTATATACCTTTAATTATGGACATTATTTTggttaaaagaaacaaaacagttGAATTtggtaatattttaaaattatgttgAATGTGTTCTTTCTTGAATGTATTAAGAATTAAATGCACAGTATGTAAAGGTTTTCACCACTGTTTTATCATTAttgctttatcttttttttccagcttatccaaaattattcttttttttattattaaagctcTTATAAGGTGTTGAAATGTGCAATAACAGATTAGACAGACAGATTGTTAGTGCACTTACAAGTGTAGTTGGGCAAAGGCTGCAGATGAAGTGTGTAGCTACATTCCTTAGAGATGAATAATATTCGAGCCTGGCTAATAAAGAAAGCgaacattt

Function

GO: NA

KEGG:

id description
K15685 CBLL1; E3 ubiquitin-protein ligase Hakai

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650148.1 lncRNA upstream 132795 3713557 ~ 3714248 (+) True LOC111192865
XR_002650147.1 lncRNA upstream 133620 3712242 ~ 3713423 (+) True LOC111192864
TU83212 lncRNA upstream 149262 3695234 ~ 3697781 (+) True G61657
TU83113 lncRNA upstream 449271 3396719 ~ 3397772 (+) False G61607
TU83115 lncRNA upstream 449271 3397028 ~ 3397772 (+) False G61607
XR_452999.3 lncRNA downstream 157657 4011384 ~ 4044308 (+) True LOC103028258
TU83399 lncRNA downstream 202712 4056439 ~ 4056959 (+) True G61804
TU83415 lncRNA downstream 268955 4122682 ~ 4122963 (+) True G61815
TU83385 lncRNA downstream 276590 4130317 ~ 4131090 (+) True G61790
TU83380 lncRNA downstream 278036 4131763 ~ 4136771 (+) True G61786
XM_007232278.3 mRNA upstream 152119 3656162 ~ 3694924 (+) True cfap54
XM_022671240.1 mRNA upstream 195392 3645317 ~ 3651651 (+) True mcat
XM_007232281.3 mRNA upstream 196978 3645317 ~ 3650065 (+) False mcat
XM_007232291.3 mRNA upstream 204620 3562745 ~ 3642423 (+) True rap1b
XM_007236658.3 mRNA upstream 473292 3361705 ~ 3373751 (+) False dyrk2
XM_022671244.1 mRNA downstream 83764 3937491 ~ 3949734 (+) True LOC103029111
XM_007232269.3 mRNA downstream 102935 3956662 ~ 3968956 (+) True atxn10
XM_007232266.3 mRNA downstream 194515 4048242 ~ 4074563 (+) True LOC103027723
XM_007232267.3 mRNA downstream 198615 4052342 ~ 4074563 (+) False LOC103027723
XM_022671245.1 mRNA downstream 200324 4054051 ~ 4074563 (+) False LOC103027723
TU83070 other upstream 543045 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 543045 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 1911544 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 2025267 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 2025708 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 1892477 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 2128646 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 2997503 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 4679032 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 4679621 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile