RNA id: XM_015601151.2


Basic Information

Item Value
RNA id XM_015601151.2
length 2324
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC103037311
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19780663 ~ 19794325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACGGTGAGCGCACAGTTGAGGTGTGCGCAGGCTGAGCACTGAGGAGTTGAATACCAGGAGCAAGTTAAaggatattttaataattaacatcttattttaataaatctcAGCGATACAATGTGGAAGTCTGTGGTGGGCCATGATGTAAATGTGAAGGTGGCATCAGAGGGAGACGACTGGGAGACGGATCCAGATTTTGAGAATGACGTCTCGGAGCAGGAGCAGAGGTGGGGGTCCAAAACAATAGAAGGGTCCGGCCGGAAGGAGCACATCAGTGTTGCAGATCTGAGGCAAAAGGTGTCTCATGAGCATGAGGTGGTGAAGAAGAAGGAGCTGGATTCGGGCCCAAAGGCATCTTATGGATATGGAGGAAAATTTGGGGTGGAGAAAGACAGAATGGATAAGGGTGCAGTGGGACATTCCTATGTGGCTCAGGTAGATCAGCACTCTTCCCAGACGGATGCAGCAAAGGGTTTTGGAGGGAAATTCGGGGTGCAGAAGGATCGTGTAGATAAGTCTGCCATGAATTATGAATATAAGGGAGAAGTTGACCAGCATGCATCTCAGAAAGACTACGCCAAAGGGTTTGGTGGAAAGTACGGAGTGCAGAAGGAGAGAGTGGATAAAGCTGCTCTGGGTTACGACTACAAAGGAGAAACTGAGAAACACCAATCCCAGAAAGATTACTCAAAGGGTTTTGGAGGGAAGTTTGGAGTGGAGAAAGAGAAGGTGGATAAAGCGGCTCATGGTTACGATTATAAAGGAGAAACTGAGAAACACCAGTCCCAGAAAGATTACTCAAAGGGTTTTGGAGGGAAGTTTGGAGTGGAGAAAGAGAAGGTGGATAAAGCGGCTCTTGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCCCAGAAAGATTATGCAAAGGGATTTGGAGGACGGTACGGTGTGCAGGAAGACCGTATGGATAAGAGTGCAGCATCGTTCAGTGAAATGGAGTCACCGACCTCGTCTTATGAGAAGACTCTGCCACTCGAGACCTcaagTGCTGGTGCTGGTAATCTAAAGGCCCGGTTTGAGAATATGGCCAAAGCGTCCGAGGATGAGAACCGTAAAAAGGCAGAGGAGGAGCGGGCGAGACGACAAGCccgagagaaaagagagagagaggaggcacAAAATAGACAGCAggtgCAGAGCAGTAAAGAGGAGGTGAAGGAGAGGAGACTCCCGCCTGTCCCAGCGGCCGCCGAGACCCCTCAACAGGCATTCAGACCACTGCCTGAAACACCCAGAGACgaacctgaacctgaacctGTAGCTCAGgaagATGATCAGCCTGATTATGATGAGCCCCCCTCCCTGCCCCCTCGATCTGCTGACATGTTTCATGAGGAGGAGCCGAAGGATGAAGacgctcctcctcctcttcctcaccgGGACATAGATGTGGGAGGATGTGAGGCTGAGGGAGAGTATGAGGATGTAGAAGAAAATCAGAATGAGGGAGGATATGAGGAAATAGCAGCGGCTAAATGCACTACTGCAGATAACGAATACGAGGACCTTGGCAGTGGTCAGGCAGCCAGAGCTATTTATGACTATGAGGGCGGAGCGGATGACGAGATCTCCTTCATGCCTGATGACATCATCACTAACATAGAGATGGTGGACGAGGGCTGGTGGAAGGGAACCTGCCATGGTCGAACTGGTCTTTTCCCATCAAGCTTTGTGGAGCTCATGCAGTAAAGTgctgaagctccgcccacttttaaaGTCATCTCATTCTCGCTAGCTGTAGCCTGAAGGGTTGCCAAATTTGCCTGACAAAAATCCACCATTGTTtggaacaataaaacaaaataattattttttaaaagaaaatcatcgTCAGAACGCCAAACTAGTATCAAACTGTCGCTGCTtacatatgtattatttactgcAGATTTGGTTTAAGACTGATTATTTGGTCCGTTAAATCTGTTTCAtataatattttgaaatatgtattatgatttgttttcatattttttaatcagtatAGTTGGATTTATGTAATGACTGAAATGGTTAGGAACATGTCTAGAGTTCCAATCCCACTTCAACCCTGTCACTCAACTCAATATCATGCACTGAGATCATGGTCTGAACTTGCAAATCAGTGTTTTATCCACAGTGTTGCAAAGTtacaaaatgcaaatatttaaaCAGAATATAATGTGCAATGGAATggtacagtgttttaaaacagatttttcatAATAAACTGAATTCTTTCCTGGAAAATGATGTTTTAATGTCAtgaaaagaacttaataaacaataaactgtt

Function

GO: NA

KEGG:

id description
K06106 CTTN, EMS1; cortactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88161 lncRNA upstream 33472 19743884 ~ 19747191 (+) True G65306
TU88156 lncRNA upstream 49784 19730477 ~ 19730879 (+) True G65301
TU88000 lncRNA upstream 168791 19610912 ~ 19611872 (+) True G65183
TU87999 lncRNA upstream 170142 19609465 ~ 19610521 (+) True G65182
TU87992 lncRNA upstream 179025 19600888 ~ 19601638 (+) True G65176
TU88168 lncRNA downstream 8850 19803175 ~ 19805102 (+) True G65310
TU88170 lncRNA downstream 10301 19804626 ~ 19806600 (+) True G65311
TU88293 lncRNA downstream 356908 20151233 ~ 20151557 (+) True G65404
TU88294 lncRNA downstream 372822 20167147 ~ 20167452 (+) True G65405
TU88292 lncRNA downstream 379045 20173370 ~ 20174743 (+) True G65403
XM_022671465.1 mRNA upstream 1200 19749310 ~ 19779463 (+) True golgb1
XM_022671466.1 mRNA upstream 1200 19749310 ~ 19779463 (+) False golgb1
XM_007232708.3 mRNA upstream 52492 19715788 ~ 19728171 (+) True orc5
XM_007232710.3 mRNA upstream 120143 19615610 ~ 19660520 (+) True kmt2e
XM_022671470.1 mRNA downstream 44870 19839195 ~ 20054048 (+) False ppfia2
XM_022671471.1 mRNA downstream 44870 19839195 ~ 20054048 (+) True ppfia2
XM_022671469.1 mRNA downstream 44870 19839195 ~ 20054048 (+) False ppfia2
XM_022671467.1 mRNA downstream 44870 19839195 ~ 20054048 (+) False ppfia2
XM_022671473.1 mRNA downstream 44870 19839195 ~ 20054048 (+) False ppfia2
TU87956 other upstream 439784 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 501848 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1157164 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 2061235 17690209 ~ 17719428 (+) False G64698
TU86974 other upstream 2904722 16873087 ~ 16875941 (+) True G64449
TU88511 other downstream 1162810 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 1229850 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1835537 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 3145277 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 3205045 22999370 ~ 23003421 (+) True c7h11orf98

Expression Profile