RNA id: XM_015602946.2


Basic Information

Item Value
RNA id XM_015602946.2
length 1326
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC103023565
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24026461 ~ 24117713 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTcccgcgcgcgcgcacacacgcacacacacaccgctgaGGGGAAGAAGCGCACCCGTGTCGGACTGCGAGCTCCTCCGCTGGATAACCGCGTGTTTCCGCACTGAGAGCGATGTGACCGCGGCCATGCGCCCCTGACCTGCCGGACTATGAGCAGAACCTCGCGGCAGAAGACTGGCCAGCCTCTGGAGGATTCCATGGACTAGTCCCCGGGAGCGCGCAGgaTGTTTAAGAAACTCAAGCAGAAGGCTTTTACACAAGTTCTGCTGCTCATCTGCATGGTCTCACTGTTGCTATCACCAACAAATGCTGCAGGACATGCTGTTCACCATGTCAGAACGGGAACATGTGAGGTTGTAGCATTACACCGATGCTGCAATAAGAACAAGATTGAGGAACGCTCTCAGACAGTCAAATGCTCCTGCTTTCCAGGACAAGTGGCTGGGACCACCCGAGCAGCCCCCTCCTGCGTAGATGCCTCCATAGTAGAGCAGAAGTGGTGGTGTCAGATGCACCCATGCCTTGATGGAGAAGAGTGTAAGGTTCTGCCTGACCTTAAAGGGTGGAGCTGTGCCACAGGGAACAAGATCAAGACGACAAAGATCTCTGCTGACCGGGACCAGCTTTGGTAACCGCTGGAAACCAGATACAGGTTGACTGAATTGAAGTCTCCTGCTCCCTGCCTCTGGGTTTGATCTGTGAGGAGTTAAAGACTGATCCCCACTGGGCCGCTTTGTATCGGCACAACTTTCACGAGTATCAGAGTGGAGAAGGTTTCTGACTCTGCGTACAGTGAGCACATCCGGACGCTGCTGTCTGCTTCACCCCCACATCTTTGTACAGCTTGTAGTGGATTACTGCAGTAAATAGCGCTTACAGTGTTGCTCGGACTGAAGGCTCAGCTCCAGACTTTCCTTTCTGTGGATCCAGAGCATGACAGGGTGAAAAGGTGCAGCCACTATTTTGCCTCAAGGAACAAGTAATTTAGTCAAGCTGATGCACCAGTTATAGCAATTGGACTACAATGTAAGCACTGTGTAGAGCTAAGGTATGCCGGAGAATATATTTATGTGCTTTGTATTGTAGGTAAAAAGGGTCTAGAGAAATTCCGACCTGAATGTCCATGTAACCTTATGTTACGTTATGCAACTTTAATTCTATTAATTCTATTGtattaaataacacattaagACTAATGCAGGGTCATAGTGGAAGTACAATTTagttatgttctttttttatatatgtataaatactcATGCCAATGCTTTCCCATATGTGTAAGAAACAAAAATGATCATACAATAAACCATGATTGTCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89579 lncRNA upstream 48534 23976240 ~ 23977946 (+) True G66389
TU89572 lncRNA upstream 114269 23911828 ~ 23912211 (+) True G66382
TU89529 lncRNA upstream 205503 23818073 ~ 23820977 (+) True G66353
TU89512 lncRNA upstream 426889 23595163 ~ 23599591 (+) True LOC111192880
TU89510 lncRNA upstream 431366 23594861 ~ 23595114 (+) True G66338
TU89679 lncRNA downstream 20192 24137905 ~ 24138185 (+) True G66472
TU89683 lncRNA downstream 68421 24186134 ~ 24186383 (+) True G66476
TU89690 lncRNA downstream 105292 24223005 ~ 24231186 (+) True G66480
TU89699 lncRNA downstream 206097 24323810 ~ 24324032 (+) True G66488
TU89739 lncRNA downstream 267206 24384919 ~ 24389774 (+) True G66514
XM_007239000.3 mRNA upstream 72760 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA upstream 72760 23916306 ~ 23953720 (+) False etv6
XM_007239002.3 mRNA upstream 72760 23916306 ~ 23953720 (+) False etv6
XM_007239003.3 mRNA upstream 72760 23916306 ~ 23953720 (+) False etv6
XM_007256038.3 mRNA upstream 306386 23698170 ~ 23720094 (+) True LOC103027234
XM_007229748.3 mRNA downstream 179204 24296917 ~ 24320066 (+) True lrig3
XM_022671556.1 mRNA downstream 250660 24368373 ~ 24383022 (+) False rpap3
XM_022671187.1 mRNA downstream 341690 24459403 ~ 24461001 (+) True LOC111192915
XM_007229740.3 mRNA downstream 392776 24510489 ~ 24517356 (+) False LOC103034593
XM_007229739.3 mRNA downstream 392777 24510490 ~ 24517356 (+) True LOC103034593
TU89518 other upstream 316404 23698152 ~ 23710076 (+) False LOC103027234
TU89474 other upstream 542547 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 581803 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 888526 23131094 ~ 23137954 (+) False crebl2
XR_002650203.1 other downstream 249779 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 250660 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 250660 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 400909 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 528013 24645726 ~ 24684580 (+) False lingo1

Expression Profile