RNA id: XM_015604721.2


Basic Information

Item Value
RNA id XM_015604721.2
length 3671
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC103047366
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16218828 ~ 16314999 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagatagaaacaaaaaacgctgactcccacactcacacacatacactcacacactctctctcttacacacacactcacacacacatacactgtatTGGGATCCAGTCAGTAGCACCCTGCCAGGTCCAGTCTGTTGGACAGcttgtctttttcttctttttttttttctctttttggctatttttgcttttttacacCTGAGCAGAAGAGTGTGAGAAGAGGGACACTGATGAGACACGTCGCTCAGAACTTGAGGGAGATCcctggtggtgtgtgtgtgactgtgtgtgccACTGCCAGCCGTAGGTGGAGGGGTCCCAGGGGTGCCTCTCGCGCTCAGCCAGGATGGGCTGTAACCTGTGCACCTTGCAGAAGAGGGAGGAACATTACAAACTGCTGTACGAGATCGCTCAGGTAAATGGGCGAGACTTTTCTAAAACTGGACATGAAGTGGCTGTGGAAGCGATGCGGAAGGACCCCATCGTTGTCCAGGTATTACGGCGGGGTCCCACAGCTAGTACCCATGGCAACCTGcaggaggtgtgtgtggtggatgTGTGTACTCAGACAGACATCACATTCGAGCACATCATGGCTCTGGCCAAAATGAGACCAGCTACTCCACCAGTGCCTGACATCTGCCCTTTTCTGCTGTCGGACAGCTGTCACTCCATCCAGACAATGGAACACGAGTACTTTGAATGTCCGGAGTACTTGTCCAACCCGCGGACTGAAGTGGAAAGGACGGATGAGTTTGAGTATGAGGAGGTTGAGCTGTGTCGTCTGAACAGTCAGGAGAAGCTGGGGCTTACTCTGTGCTACAGGACGGATGATGAGGAAGACACGGCTATCTACGTCAGTCAGGTCGGCCCAAACAGCATAGCTGCCAGAGATGGACGCATCAGAGAGGGAGATCGAATTTTGCAGataaATGGCCAAGATGTGCAGGACAGGGAGGAAGCTGTGGCTCTTCTGTCTAATGAAGACACCCGGAACATTGTGTTGTTGGTTACCAGACCAGAGGCACAGATGGATGACGgctggttggatgaagaacacCATGACTTTTTGGAAGAGCTGAAGATGGACATACTGGAGCAACGAAGGAAAGAGGACATATACCAGTCGGCCAACTGTGATAAGCAAtccAAGCTGATAGAGGAGGACAAAGCCACCTGCTCCTCAACCCTGCAGGATAAAGACAGCGGAATGGGATATGGGGGTGAGGAGGACTCCGAAACTCGCGTTCAACTAAGGACTCCAAAGCGTATGCAGCACCAGTGGGAGACAGAGACTCCACATCTGGTTTCTACAGACTCCAAaggctcagccaatcaggagcTGAGCCAAGACTGTAAGCATGTGGAAACTGGAGTGGAATACGACCATTTCCAGCAACTTCTGCAACTGAAGTGCCAGATCCGGAACGAAGGCGAGTGTGGCCTGGTGTACCGGCGGAGTAGCACCATCGAATGCAGCTTGACGGAGCAGGCCAGCAGAAGAGGGGTGGAGCGTGAGTTGCGCATGCTGAACGATGAGCTGCGCAGCATTGAACGCAAGTGCCAGAGCATCATGCAGGCCCACCAGTTGCGGAGAAGCAAGCGCGACTCTCCACGAACAGACAAGGAAGGCAGGTCTCGCAGGGCCAAGTTGGAGGACATCAATGAGCAGCCTGAGAGGATGCAAAACGAGAAGCTGAGGGACAAGGACAGCTCAAGTGCGTACAACACAGCAGAAAGCTCACGCTCCACCCCTTTAGGCACTGAGTGTTCACCTGATCACTCCCTGCAAAGGCGCATTAACCAGACTAATCAGAGGAACTTGCGCAGCAGCAATGCAATTCATGCCCATGGGGTTTCTTGTGAAAGTCCGTTAACCTCCCACAGTTGCTCTGCTTACAGTCACACATTACCTTCTCACAGTACCTTCTCTTTAGGTAACTCTACATATACCCACACGTCTCAAGTTCCCAACTCCACTCCACCACTTCAGACCCCCATTACTAGTCCTGGATCACAAGGTCCAGGGCAAGCTCTTTCAAGCAGCCTGGAGCAGAGTCCAAGCAACCCATCCGAGTCAGACCCAGCCCTTCCAGCTGATGACGAGAGGCACGACCGGAAGAAGAGTCAGAGTCAAGTGGCGCAAGGACGCATCCATCCTTCTCCGTACCATTCAAACACAAGCCACTATCAGGGCTACATGCAACTCCTGCAGCAGCACTCGTCCTCCTCTTTGGAATACTCCCAGAGCCAGCTCAGCCTGCTTAGCCTCCGCGGTCGGCCTTCCGCGCCTCAGCCAGGTCGGCTAGAGTGGAAGGTAAAGGTGAGAGCCGACGGGACCAAGTACGTTGCCCGCCGACCTGCCCGAGACCGGATCCTCCGAGAGAGGGCACTAAGGATCCGGGAAGAGCGCAGTGGCGGCATGACCACAGACGATGATGCCGCAAGTGAGCTGAAGATGGGACGCTATTGGAGCAAGGAGGAACGCAAGCAGCAGCTGGCGCGAGCCAGGGAGCAGCGCCGGCGCCGGGAGTTCATGCAGCGCAGCCGACTGGAGTGCTTGAGAGAGACTGGTGGAACGTCCAGTGCTGAGGTCAGCATCCTGGAACTGAGCCACAAGAAGATGCTGAAAAAGCGCAACCGCAAGATCTTAGACAATTGGATGACCATTCAGGAGCTGATGAGTCATGGGGCCAGGGCTCCTGAGGGCACCAAAGTTCACAATGCCTTCCTGTCTGTCACAACCGTGTAGTCGATCTTTTGTACTAAGATCCTTCCAAATGACAGTTTTATATTGTGCAAAAGGAggtatttttcatgttttgtatGATGTAAAAAAACACCTTGTAAAGACTTTTCACTCCAAATGGGCTTTGTTTTAAATCTGACATAACTGTGATTGAATGTTccagatttttatatatatatatattagctggAAGTATTTGGACCACTTCAGacctctctgtcttttttcctACAAGTGCATAAGACTGCCAGTTTAGCTAAAGTGTTTGGTGTCAAACACTACTACTGTACAGCGTTCGAACGGCTTAACCGTTACTGCCCTTTATAAAGTCCTGTGTGTTTCAAAGTACTTGAATTTTCTCTATGGTTTATTATGCAGCAGCTATTCTTTCCACTCTAAAATGTGCTGTAAATAGACACTTTTGGATCATTGTTACTTTTAAATAAGTTACGTTCCGTTCTgaactttacttatttaaacTCAAACCTGGATggtttacaaatacaaatcaaaagcttttttttttcacatggtaTCTGACGGTACCATTAACATGCAGTATTTATGATCATTTTCATTGTTCCATTGTAGCTACTGTACCTTAataatattgcagtatattttatGTCTGGCGTTTCTCTCACTATACCTCATTGCACCTCTGATGCCAAATACAGTAATTAGCTGTATTCCTGAATGAGGGTAATGACATGTTTCTGAAGGTTTTTAGCGAGTCTGAATTTTATCACTGTTGTTGTGCCTAAGGATCTGGTGCTTTCCACTGTCTGCAATGACTCATTTTTTTACTATACATTGTGGTGAACAAATGTGCATTTTTGCTAACTTATTGATCCTCTTCAAGTAGTTCTTTCCAGTGTAGCCGGCCACTTTGCAGCCAGGTCAACATGTTCTAAGTGTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86750 lncRNA upstream 51450 16167064 ~ 16167378 (+) True G64279
TU86704 lncRNA upstream 68854 16149768 ~ 16149974 (+) True G64237
TU86700 lncRNA upstream 74110 16144285 ~ 16144718 (+) True G64233
TU86656 lncRNA upstream 262612 15956009 ~ 15956216 (+) True G64205
TU86596 lncRNA upstream 469255 15745081 ~ 15749573 (+) True G64159
TU86767 lncRNA downstream 45904 16360903 ~ 16368394 (+) True G64292
TU86766 lncRNA downstream 62661 16377660 ~ 16432412 (+) True G64291
TU86853 lncRNA downstream 176187 16491186 ~ 16532783 (+) True G64362
TU86895 lncRNA downstream 293858 16608857 ~ 16609213 (+) True G64393
TU86909 lncRNA downstream 380941 16695940 ~ 16707096 (+) False G64403
XM_022671399.1 mRNA upstream 77429 16112859 ~ 16141399 (+) False LOC103046856
XM_007245023.3 mRNA upstream 77429 16112948 ~ 16141399 (+) True LOC103046856
XM_022671398.1 mRNA upstream 117304 15998201 ~ 16101524 (+) True LOC103027800
XM_007245022.3 mRNA upstream 264896 15923726 ~ 15953932 (+) True LOC103046551
XM_022671395.1 mRNA upstream 295766 15904342 ~ 15923062 (+) False ccdc87
XM_015602656.2 mRNA downstream 80327 16395326 ~ 16426623 (+) False arid2
XM_007237948.3 mRNA downstream 80328 16395327 ~ 16426623 (+) True arid2
XM_007237950.3 mRNA downstream 80328 16395327 ~ 16426623 (+) False arid2
XM_007237949.3 mRNA downstream 80329 16395328 ~ 16426623 (+) False arid2
XM_015602657.2 mRNA downstream 300572 16615571 ~ 16651658 (+) False LOC103026270
TU86374 other upstream 1473746 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3057508 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3559310 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 3749926 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 6568741 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 107235 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 124221 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 438044 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 518297 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 549519 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile