RNA id: XM_015606649.2


Basic Information

Item Value
RNA id XM_015606649.2
length 1510
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC103022068
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1846538 ~ 1861838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGTCGGAGCTGAAGCAGGAGCGACCACGTGGTACGCTTGCCGCATTTGTAAACACGGCATGTTTATAGCTACAGTATTCAGTGTAGCGGTGTTTTAAAGAGAATTTGGTTGGTTTTAGTCGGTATTTATTAGTTTAAGTAGGAGGATGGAGGTGGAAACAGCAGTGCCGTATTTCTTCGGTGATATCGgtttCTGGTCGGAGAGGACAGAAGTACATAAGGCTGCTTATCATGGACAGGTGAGCCAGCTGCAGAGTCTAATCCAGAGCGGAGCTTCAGTCAATATTGTAGCTGTAGACTCCATCACTCCACTCCACGAGGCCGCTATTCGGGGACAGACGCAGTGTGTGAGGCTGCTGCTGGATGCTGGAGCACAGGTGGACGCGAGGAACGTGGACGGCAGCACTCCTCTGTGTGAGGCGTGTTCTGTCGGTAACTTCGAGTGTGTGCAGCTGCTGCTGGACTACGGTGCAAAGGTCAACCCTGCCCTCACTTCTCGCACCACCTCGCCACTACACGAGGCCTGCATGGGCGGCAGTTCTGAGTGTGTAAAGCTAATGATATCTAAAGGAGCCAGTCTAGAAGCCTATGATCTGTACAATGGGACTCCACTACATGTAGCCTGCGCTCACAAACACCTGGAGTGTGTGAAGGTGTTACTCAACGCAGGAGCTAAAGTAAACGCAGCCCGTCTGCACGAGACAGCACTGCACCACGCAGCCAAAGCCAACAGCTTGGAAATGATCAACCTGCTGGTGGAATTCGGCGCAAACGTGTACGTCAGAGACAAGCACGAGAAAAAGCCGGGTGACTACACCAGACCTGACACGCCGTCTGCTCACTGTCTGCAGCTTTATGAGAGTACTCCTCTTTCTCTGCAGCAGTTGAGCCGAATTGGACTGAGGACAGTACTGGGCACCAGAGCACTGCAGACTGTGACCAAACTAAACCTGCCAAATCGTATCATTCACTACCTGTGCTACCAgtgagatacacacacacacacacaacacacacacacacagcttcaaccacacacagctctcataTTCACTGGTCCAATACAGAAAACAGATTTTACTATAGGATGGAATGCACTTATCACGTCTTAACTCAGCACTTTGGTCTTTTAGTGTGCAATATTATAAATCCAGTTTGTAAAATACTTAGGAAACATAACACTACTGTAAATATTGACACAAAGAACGTATGACAGATTATACTTTAGTTCTTAGAAGTCACAGTTATTGTTAACTATGGAATCATGAAGTcatttaaaataagttatttttctCTTGTTGTTTAATTGAAACATATAGATAAATTGGGTAAAAGTGCAGACTTAAGACTTAACTATAAGGTGCAATTTAGGCGAAAATAGTAAGGTGTTGCCCTTGTTGATTTTAGTAGACTGCCCTGCACTTTTAACCAccagaaataacttttatagggttacaaatgtgaaagaactgtttgaaaaaattccaccagctaaaatacgtaattttc

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10335 ASB13; ankyrin repeat and SOCS box protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82504 lncRNA upstream 56106 1789535 ~ 1790432 (+) True G61132
TU82503 lncRNA upstream 85356 1758838 ~ 1761182 (+) True G61131
TU82451 lncRNA upstream 224981 1609125 ~ 1621557 (+) True G61100
TU82430 lncRNA upstream 340721 1505343 ~ 1505817 (+) True G61085
TU82423 lncRNA upstream 365120 1479157 ~ 1481418 (+) False LOC103024246
TU82647 lncRNA downstream 171165 2033003 ~ 2033287 (+) True G61222
TU82661 lncRNA downstream 229023 2090861 ~ 2094032 (+) True G61233
TU82664 lncRNA downstream 256961 2118799 ~ 2152586 (+) True G61236
TU82750 lncRNA downstream 553195 2415033 ~ 2424116 (+) True G61302
TU82767 lncRNA downstream 584241 2446079 ~ 2451509 (+) True G61316
XM_007252400.3 mRNA upstream 776 1842278 ~ 1845762 (+) True LOC103022369
XM_007252402.3 mRNA upstream 5111 1826840 ~ 1841427 (+) True LOC103022887
XM_022671213.1 mRNA upstream 21103 1812200 ~ 1825435 (+) False ankrd16
XM_007252403.3 mRNA upstream 21103 1812201 ~ 1825435 (+) True ankrd16
XM_022671212.1 mRNA upstream 40796 1714817 ~ 1805742 (+) True LOC103031096
XM_022671214.1 mRNA downstream 59622 1921460 ~ 1929905 (+) False LOC103036328
XM_022671216.1 mRNA downstream 123035 1984873 ~ 2001629 (+) False mkrn1
XM_022671215.1 mRNA downstream 123036 1984874 ~ 2001629 (+) True mkrn1
XM_007259768.2 mRNA downstream 142004 2003842 ~ 2005246 (+) True tmem121b
XM_007259754.3 mRNA downstream 412529 2274367 ~ 2324260 (+) True lmo3
trnay-gua_8 other upstream 24762 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 25203 1821248 ~ 1821335 (+) True trnay-gua_7
trnay-gua_6 other upstream 27937 1818514 ~ 1818601 (+) True trnay-gua_6
trnay-gua_5 other upstream 28383 1818068 ~ 1818155 (+) True trnay-gua_5
trnay-gua_4 other upstream 30048 1816403 ~ 1816490 (+) True trnay-gua_4
TU82609 other downstream 59557 1921395 ~ 1935499 (+) True LOC103036328
TU83070 other downstream 1434708 3296546 ~ 3303998 (+) True G61575
TU83069 other downstream 1437251 3299089 ~ 3303998 (+) False G61575
TU83815 other downstream 3884366 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 4120535 5982373 ~ 5993994 (+) True c7h12orf75

Expression Profile