RNA id: XM_022671158.1


Basic Information

Item Value
RNA id XM_022671158.1
length 495
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC111192892
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 809234 ~ 809997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgatgtagatCACCTGCCTCTCAGCCTGAGAGAAGGCGTGGGAAGCTGTTCTGGACGGCTGGAGGTGTATTACAATAAAACACCGGGGTCTGTATGTGGTGATCAGTGGGACATCAGGGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGTGCTGCTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGAACCACACTGACTGCTCCCACAGTGCTGGAGTCACCTGTGCAGACATAACCGTACCTACTACGACTACTGCACCCACACCAACAACCCCCAACCCCACAGTTGTTCAGACAGAGAAGCGACCAGACCCTCCTCCACAAACTCCTCCACCAGCTGTCCCTCCATCTATCCAGTGTCTCTCCTGGTTCTGGGACTCTGTGCTCTTCCTGGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82283 lncRNA upstream 2205 806565 ~ 807029 (+) False G61014
TU82274 lncRNA upstream 8364 800649 ~ 800870 (+) True G61011
TU82253 lncRNA upstream 68336 740691 ~ 740898 (+) True G60996
TU82239 lncRNA upstream 185799 616774 ~ 623435 (+) True G60983
TU82185 lncRNA upstream 250654 555151 ~ 558580 (+) False LOC103023024
TU82328 lncRNA downstream 23990 833987 ~ 835273 (+) True G61016
TU82335 lncRNA downstream 31598 841595 ~ 949084 (+) True G61023
XR_002650171.1 lncRNA downstream 35636 845633 ~ 846513 (+) False LOC103039262
TU82325 lncRNA downstream 35697 845694 ~ 952485 (+) True LOC103039262
TU82327 lncRNA downstream 35697 845694 ~ 952485 (+) False LOC103039262
XM_015603384.2 mRNA upstream 28437 749881 ~ 780797 (+) True syt10
XM_022671204.1 mRNA upstream 28437 749881 ~ 780797 (+) False syt10
XM_022671203.1 mRNA upstream 28437 749881 ~ 780797 (+) False syt10
XM_007240405.3 mRNA upstream 28437 749881 ~ 780797 (+) False syt10
XM_007236107.3 mRNA upstream 187492 614113 ~ 621742 (+) True LOC103021355
XM_022671159.1 mRNA downstream 83372 893369 ~ 912312 (+) True LOC111192895
XM_022671160.1 mRNA downstream 102894 912891 ~ 914305 (+) True LOC111192896
XM_022671162.1 mRNA downstream 109177 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 119613 929610 ~ 943921 (+) True LOC111192898
XM_022671164.1 mRNA downstream 190890 1000887 ~ 1007827 (+) True LOC111192900
TU82226 other upstream 184225 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 208085 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 662551 144246 ~ 146683 (+) False mrps33
XR_002650173.1 other downstream 31040 841037 ~ 844690 (+) True LOC111192924
TU82289 other downstream 99765 909762 ~ 1014461 (+) True G61014
TU82298 other downstream 177761 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 178299 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 217800 1027797 ~ 1043316 (+) True G61013

Expression Profile