RNA id: XM_022671159.1


Basic Information

Item Value
RNA id XM_022671159.1
length 2169
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC111192895
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 893369 ~ 912312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATTGAACGGCGCGCTCTCACGGTGTCCAGCAGTAACACATcggttcagacttccagctccGACCCGAGGGGAGGTCAGGTGTGGTCAGAGGAGCTTCAGTGTAGAGGAAACGAATCTCAAATTTACTTCTGTCcaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCAGGCAGTGTGAGGTTGGTGGATGGAGGGAGTCGCtgtgctgggagagtggaggttcttcatagAGGACAGTGGGGAAGAGTGTGTGGTAATAACTGGGATATGAGTGATGCTGCAGTGGTGTGtagagagctgggctgtggagaGGCTGTAGATGCAGTGAGTGAATCTCACTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAATCTACACTGAAGAAATGTCAAATGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTCAGGAGTCCGGCTGGTTAATGGTTCTCGCTgctctgggagagtggaggtccttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCAGGTCACACTCAGGCTCGGATGATGAACGGTTCAGACTCCTGTTCTGGTCGAGTGGAGCTCCAGTATCTCAGTGAGTGGGGTACAGTGTGTGATGTAAGCTGGGATATGAGAGCTGCCAGTGTCCTCTGTGCTCAGCTGAAGTGTGGGAGTGCTGTGGCTGTGTTGGGGTCAGACTGGTTTGGGGAGGGGAGTGGCCGGATCTGGGCTGATGTGTTTGATTGTCAGGGAAACGAAACACACCTGTCAAAATGTCCCATTTCATCATGGAGTCGAACTGCATGCTCTCATAAACAGGATGCTGGAGTCATCTGCAGTGATTCTTCTCTGGCGTCTCATGAGGGAGGAGTGAGGTTGTCTGGAGGGatggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTCAGTCTGAAGCCTCTGTGGTCTGCAGAcagctgggctgtggttctgTACTCAACATCTCCAGCTCCTCTTCATCCAGTCCTGAACACAGCTACATGAATGTGACGGGTTTTAACTGCTCTGGGAGTGAAGCTCATCTGAGGAACTGCAGCAGCTCACAAGCAGTTAACTGCAGCTCCACGGAACAGCTCCACATCACCTGCTCTGGTACGTGCAACAGCTCCATCAGGCTGGTTGGTTCTGGAGGAGACTGTGCAGGAAGGCTGGAGGTTTTTCACAGTGGATCATGGGGGACAGTGAGTGATGAATTGTGGGATATTGAGGATGCGCAGGTGGTCTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATATGGCTGAATgaggtggagtgtgaggggAACGAGGCGTCTCTGTGGAACTGCAGATATCAGCTGTGTGAAGAGGATGAATGTGGACACAAGGATGATGTAGGAGTCGTCTGCTCAGAGTATAAAGAGATCAGACTGACTGAGGGCTGTGAGGGGAATCTGGAGGTGTTCTATAATGGAACCTGGGGGAATGTGTGTAACAATGGGATGGATGTAGAGACAGTAGGTCTGATTTGTCGAGAGCTGAACTGTGGAAGAACTGGGAGTGAGAGAGCTACCAAAGCAAGAGTGGAATCAGCTCCTAACTGGATGGATGATGTAAAATGTAGGAAACATGACTCAACTTTGTTTCACTGTCCATCTTCCTCCTGGAGTCAGAACAACTGTGATAACAGCAATGAGGTGACTCACATTACCTGCTCAGGGGAGAAGAAACAGCTTGCACTGGAAAATCATCTAAAATGCTCCTTATTTCCAAACCAAAGCCAGTGCTCAAGTAAGAATATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82279 lncRNA upstream 31127 853526 ~ 862242 (+) False G61013
XR_002650177.1 lncRNA upstream 34860 853711 ~ 858509 (+) True LOC111192928
XR_002650171.1 lncRNA upstream 46856 845633 ~ 846513 (+) False LOC103039262
TU82328 lncRNA upstream 58096 833987 ~ 835273 (+) True G61016
TU82293 lncRNA upstream 83397 807397 ~ 809972 (+) False G61014
XR_002650176.1 lncRNA downstream 2588 914900 ~ 916812 (+) True LOC111192927
TU82295 lncRNA downstream 78501 990813 ~ 1049056 (+) False G61014
TU82312 lncRNA downstream 78501 990813 ~ 1047326 (+) False G61014
XR_002650172.1 lncRNA downstream 135485 1047797 ~ 1049056 (+) True LOC111192923
XR_002650146.1 lncRNA downstream 137818 1050130 ~ 1051090 (+) True LOC111192863
XM_022671158.1 mRNA upstream 83372 809234 ~ 809997 (+) True LOC111192892
XM_015603384.2 mRNA upstream 112572 749881 ~ 780797 (+) True syt10
XM_022671204.1 mRNA upstream 112572 749881 ~ 780797 (+) False syt10
XM_022671203.1 mRNA upstream 112572 749881 ~ 780797 (+) False syt10
XM_007240405.3 mRNA upstream 112572 749881 ~ 780797 (+) False syt10
XM_022671160.1 mRNA downstream 579 912891 ~ 914305 (+) True LOC111192896
XM_022671162.1 mRNA downstream 6862 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 17298 929610 ~ 943921 (+) True LOC111192898
XM_022671164.1 mRNA downstream 88575 1000887 ~ 1007827 (+) True LOC111192900
XM_022671165.1 mRNA downstream 484886 1397198 ~ 1404499 (+) True cracr2a
XR_002650173.1 other upstream 48679 841037 ~ 844690 (+) True LOC111192924
TU82226 other upstream 268360 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 292220 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 746686 144246 ~ 146683 (+) False mrps33
TU82298 other downstream 75446 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 75984 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 115485 1027797 ~ 1043316 (+) True G61013
TU82516 other downstream 878187 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 879240 1791552 ~ 1807151 (+) False LOC103031096

Expression Profile