RNA id: XM_022671164.1


Basic Information

Item Value
RNA id XM_022671164.1
length 1399
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC111192900
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1000887 ~ 1007827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCCTCTGATTTGTCACTGAAAATGTTTGATGATTTCCTCTCCTCTTTCTAATAAGGTCATAGTGAGTGTGATTGGCGGCTgtggggtctctctctctctctctctctctctctcaggttctTCAGTCTCTCTGGGGGAGTGGAGGTGAAGCTTGTTCTGCTGCTGAGTTGAACGGAGTGTGTGCAGGTCAGAGGGAGATGGACAGCTGCGTGCTTCTCATTCTTCTGTCCTCCACAATCACACTCACCACAGCTGACGGTGTGAGGTTGATGGATGGTGGGAGTCGCtgtgctgggagagtggaggttcttcatagAGGGGagtggggaacagtgtgtggTAATAACTGGGATATGAGAGATGCTGCAGTGGTGTGtagagagctgggctgtggagaGGCTGTAGATGCACTGAGTGAAGCTCATTTTGGATCAGGATCAGGACAAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAATCTACACTGAAGAACTGTAGATCATCACTGTGGAAAAAACATGACTGCCATCCAACTCAAATTTCTAGGGTCATCTGTTCAGgaGTCAGGCTGGTTAATGGTTCTCACTGttctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgctcccatgataatgatgtgggactggtgtgtgcaggtgagaactgcatgtttaGCAGTGTGAGGTTGGTGGATGGTGGCAGTTGCTGTGCTGGGATagtggaggttcttcatagAGAAGAGTGGGGAACAGTATGTGGTAATAACTGGGATATGAGAGATGCTGCAGTGGTGTGtagagagctgggctgtggagaTTCTGTAGATGTACTGAGTGAAGCTCATTTTGGATCAGGACCAATCTGGATGGATAATGTGGACTGTAGTGGATCAGAGTCTACACTGAAGAAATGTCAAATGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTCAGGTAAGACACTGTAAATATCAAAAAGTGTCAGGCTGGTTGGAGGTTCTCACTGttctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggtgcagctgcttttggtagaggggagggtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82325 lncRNA upstream 48402 845694 ~ 952485 (+) True LOC103039262
TU82327 lncRNA upstream 48402 845694 ~ 952485 (+) False LOC103039262
TU82335 lncRNA upstream 51803 841595 ~ 949084 (+) True G61023
XR_002650176.1 lncRNA upstream 84075 914900 ~ 916812 (+) True LOC111192927
TU82279 lncRNA upstream 138645 853526 ~ 862242 (+) False G61013
XR_002650172.1 lncRNA downstream 39970 1047797 ~ 1049056 (+) True LOC111192923
XR_002650146.1 lncRNA downstream 42303 1050130 ~ 1051090 (+) True LOC111192863
TU82422 lncRNA downstream 470330 1478157 ~ 1480898 (+) False LOC103024246
TU82423 lncRNA downstream 471330 1479157 ~ 1481418 (+) False LOC103024246
TU82430 lncRNA downstream 497516 1505343 ~ 1505817 (+) True G61085
XM_022671163.1 mRNA upstream 56966 929610 ~ 943921 (+) True LOC111192898
XM_022671162.1 mRNA upstream 73343 919174 ~ 927544 (+) True LOC111192897
XM_022671160.1 mRNA upstream 86582 912891 ~ 914305 (+) True LOC111192896
XM_022671159.1 mRNA upstream 88575 893369 ~ 912312 (+) True LOC111192895
XM_022671158.1 mRNA upstream 190890 809234 ~ 809997 (+) True LOC111192892
XM_022671165.1 mRNA downstream 389371 1397198 ~ 1404499 (+) True cracr2a
XM_022671207.1 mRNA downstream 437808 1445635 ~ 1477258 (+) False LOC103024246
XM_022671208.1 mRNA downstream 437808 1445635 ~ 1477258 (+) False LOC103024246
XM_022671209.1 mRNA downstream 437809 1445636 ~ 1480910 (+) True LOC103024246
XM_007252404.3 mRNA downstream 623046 1630873 ~ 1693966 (+) True LOC103023715
XR_002650173.1 other upstream 156197 841037 ~ 844690 (+) True LOC111192924
TU82226 other upstream 375878 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 399738 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 854204 144246 ~ 146683 (+) False mrps33
TU82277 other downstream 19970 1027797 ~ 1043316 (+) True G61013
TU82516 other downstream 782672 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 783725 1791552 ~ 1807151 (+) False LOC103031096
TU82508 other downstream 783725 1791552 ~ 1808930 (+) False LOC103031096
TU82513 other downstream 783725 1791552 ~ 1808930 (+) False LOC103031096

Expression Profile