RNA id: XM_022671167.1


Basic Information

Item Value
RNA id XM_022671167.1
length 1806
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC111192904
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6012846 ~ 6015114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCTGTGCGATACGGAGGATCGGGATTTTATGAATACCATCGCCTTTTCTCCGCACAGGCAGCTGCGCGCCTGCAGCAATGGAACATCGCTACCTATTGGGGCACCCTGAATCTCGAGCTTTATTGCCGTATTTTCGCTGGCCGTCCTTCCCTCTCCTGCGAACTGTGCGGCTCACGCCCGCCCTTCCTGCCCCCACCATCCTCCCAAGTTCGGGCGGAGCTGACTGCTCCGCTATCTGTCAACCCCGCAGAATCTGAACCCGACGTTGTCTCCTCTCTCCTCGCCAAGGAGGTTTCTGATGGTTTCATGGTCGGCCCCTTTTCCTCTCCCCCTTTTTCTACTTTTCGGATTAATCCCATCGGCATTGCCACGCGCAAATACTCGGGGAAGAAACGCCTCATCATTGACTTATCCGCTCCCCATGGCTCTTTTGTTCCTTCCGTCAATAGCCTGGTGCCCAGCGACGAGTTTTCTTTGTGCTATGCCCGCGTCGATGATGCGATTTCCCTCATCAAACTCGTCGGACGCGGCACTTGGATGGCCAAAGCAGACATCGTCTCAGCTTTTAAGGTCTTACCCATCCATCCTGACTTTTGGCACCTATTTTGCGTGCGCTGGAAGGGGCGTTACTACTTCGCCACCCGGCTCGTTTTCGGCTGTAAGAGCAGCCCCAAGATATTTGACTGTTTTGCTGAGGCACTGTCCTGGATCCTGCTCAACTCTGTCTCGTTTCCAATTTCAGAAATTCAGGACCTTGGCTCCACTCTCAGACCCACATCCAACCCCAGTTCCACCTTATTTGGACACCGTCTTCCCGCTGCACACGCCTTCTACAATTTGACTCTCCAATCCCAGGACCTCATTCTTAACGCCGTTTCCCCCAACACTCTTTCTACTTACTGGACAGGATGGCAATGTTTTCGTCGGTTCCAcgtttttctttctatctcctTTCCCTCCTTTGATCTATTTAGCACGGCCAACTTCCTCACCTTTACCAGCTCCCGCCTCTACATTCGATCATCCTCCCTCAAAGTTTACCTGTCAGCTATCAACTTCTTTCATAAACTCCTCCATGGCTCACCTCATCCTTTCGTTAGTCATCCTCAgatcacactgcttttaaaaggcattaaaaGGAGCGAACCTCCTCTCACTCACAAACGTCTTCCCCTAACCTCTCACATTCTCTCCTGCTGCCTTTCCACTCTACGTTCCAGACAATATTCTCCCAGCATTTCTCAAACCTTAGAAGCTATGTTTTTGCTAGCTTTCTTTGGTTTTCTCCGAGTTTCAGAATTTACCACTCCTTCCACCACTCATCATCCCTCTCTCCACCcctgtctgtctgatatcaccATCCTGGACACCGACACCCTCATTTTCAACATCAAGAGAAGCAAAACTAACCAATTTGGTATATATACACCAGTTTACATATTCAGACTTCATTCATCTCTCAGTCCTTACGAACCTCTCCAGCTCTACCTCCAGTTCCGTCTCTCCCAAGGTGCTCGTCCTCATGACCCCCTGTTTATCAGTGAATCCGGTTCCCCTGCTACCAGTCATTGGTTTCATTTTCACCTCAAGAACGTACTCTCCCTCACTGGATTTAACCCCGCACATTTCTCCGCCCATTCTTTCAGAATCGGAGCAGCCACTACAGCTTCTCACCAAGGTTTACCTGACCACACCGTTCAGATCCTCGGCCGCTGGTCCTCCCATGTCTATCACAGCTACATCCGCACTCACGCCCGAGACCTGTTCACTGCCCACGAACTTCTAGCTTCTGTATTTCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83972 lncRNA upstream 14617 5998008 ~ 5998229 (+) True G62258
TU83933 lncRNA upstream 45112 5928326 ~ 5967734 (+) False plxnb2
TU83931 lncRNA upstream 232762 5779695 ~ 5780084 (+) True G62224
TU83833 lncRNA upstream 247063 5758437 ~ 5765783 (+) False LOC111192936
TU83864 lncRNA upstream 313953 5694397 ~ 5698893 (+) True G62174
TU83995 lncRNA downstream 19053 6034167 ~ 6040514 (+) True G62276
TU84002 lncRNA downstream 30060 6045174 ~ 6045425 (+) True G62280
TU84006 lncRNA downstream 59175 6074289 ~ 6074626 (+) True G62284
TU84011 lncRNA downstream 156099 6171213 ~ 6172168 (+) True G62287
TU84035 lncRNA downstream 162110 6177224 ~ 6177505 (+) True G62309
XM_022671149.1 mRNA upstream 19198 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA upstream 19198 5982236 ~ 5993648 (+) False c7h12orf75
XM_007229723.3 mRNA upstream 45111 5782091 ~ 5967735 (+) True plxnb2
XM_022671266.1 mRNA upstream 247061 5753302 ~ 5765785 (+) False LOC111192936
XM_022671271.1 mRNA downstream 201697 6216811 ~ 6334340 (+) True nell2
XM_022671272.1 mRNA downstream 394803 6409917 ~ 6426277 (+) True LOC103023466
XM_007245033.3 mRNA downstream 412892 6428006 ~ 6441574 (+) True pus7l
XM_007245029.2 mRNA downstream 586269 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA downstream 603231 6618345 ~ 6632805 (+) False LOC103021937
TU83965 other upstream 18852 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 258562 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2708848 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2708848 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4077347 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 836116 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2517645 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2518234 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3418323 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3631465 9646579 ~ 9650087 (+) True G63051

Expression Profile