RNA id: XM_022671169.1


Basic Information

Item Value
RNA id XM_022671169.1
length 4138
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC103023836
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7703112 ~ 7763123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACGGAGAAGCGCTCACAAACactcatactcacacacacacacacacactcactcatacacacacacgcgcgcgcgtcTTCAGCCATGCAGGCGGGCGAAGACGCGGAGGTCCCCGCACTGAACGACCTGAACAACAACAGCAGCGGGAAACACCGGAGCGGCGCGCAGGGCAGGGATGGCTTTAGGAACCAGCAGAAGGACTCAgagGGCTCCATGGAATCCCCCAACCTTGAGTTTGAATACGGAGACACAGATAGCCTGACAGCAGAGCTTTCAGAACTGTACAGTTACACAGAGGAGCCGGAGTTCAGTCTGAACAGAGACTACTTTGAAGAAGACTTCAGGAGTCACGtgaagGGCAGGAGATGGGTGGACCTGAATGTTGATGAGCAGAGGGCGTATGTCATGAGGCTGCTGGACGCTCTGGAGGTcacagacagagaaaagagacTCAAAGTGGCTCGCGCTATTCTCTACCTGGCTCAGGgtgtattTGATGAGTGTGATTTAGAAGCAGACGTCCTCCACTGGTCTCGCCACAATGTCTTCCTGCTCTATGATATGGGCATCTTCACAGCTCTGCTGGAGCTCCTCAGCATGGAGATCGAGGAGCGGCTGAAAACAGCTCTGTCATGGCCTGGCTGCTGGCGCTGTATTTGTGGCACTCTCTCCAGACCAGCTCTAATGAGACAGCTCGACTCAGGTCGTCTACAGATACAGCAAcacagtgtgtgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgcagggttTTGTTGAGCATCATGTATCTGATGGTGGAGACGATCCGTGTGGAAATGGAAGATGATAAGCCTGAGTGGCGGACGGCCCGAGAGGCCTTCAAAACCGAGCTggGTTCTCCACTCTACAACGGAGAACCCTTCGCCCTGCTGCTCTTCACCATGGTCACCAAGTTCTGCAGCATGAGCGCCCCCCATTTCCCCATGAAgaaagtgctgctgctgctgtggaagACTGTGCTGttcaCCCTGGGAGGTTTTGAAGAGCTGCAGCAGATGAAGGTTCGGGGCAGAGAGAAGCTGAAGCTGCCCCCTCTCCCAGAGGACAGTATAAAGGTGGTCCGAAGCATGAGGGCCGCTTCACCTCCAGCCTCCGCCATGGAGCTCAtcgaacagcagcagcagcagaagagagGACGCCGGAGCCGCAGgcctCTGGTCAAGCAGGACAGCCTGGACACCTATAACGAGCGCGACCCCTTTAAGAACGATGACGCTCGGGATGAGGAAGATGACGGTGAGGACGTGGACAGCGGCATCGAGGGCGAGGTGGACCCCCTGGACCGTGATGTCATTATCCAGCCACCTCCCCCTCCACCCCCACTGCGGCCCCCTACTGACAGAGTGTCCTTTCCTAAAGGGCTGCCGTGGGCTCCTAAAGTCAGagagaaagacattgAGCATTTTCTGGAGACCAGCAGGAACAAGTTCATTGGTTTTACCCTGGGCAATGATACAGAAACCCTGGTTGGGCTACCTAGACCAATCCACGAGAGTGTGAAGACTCTAAAACAGCACAAGTACGTCTCCATCGCTGAGGTTCAGATCAAACGAGAGGAGGAGCTGCAGCAGTGCCCTATGACCATGGGAGATGAAGAAGTGGAAGAGACCCCTGCAGAAATCTTATATGTGGGGATGCTCCCTAGTCTTTCTCAGTATGTGATTGCCCTTTTAAAGCTTCTTCTGGCTGCAGCTCCGACCTCCAAGGCCAAGACTGACTCCATCAACATCCTTGCTGATGTTCTTCCTGAGGACATGCCGATCACAGTTCTCCAGAGCATGAAGCTGGGCATTGATGTGAACAGACACAAGGAGATAATAGTGAAGGCCATCtcggctctgctgctgctgctgctcaagCATTTCAAACTCAACCATATCTACCAGTTTGAGTATGTGTCACAGCATCTGGTGTTTGCCAACTGCATCCCCCTCATCCTCAAGTTCTTCAACCAGAACATCATGTCCTATATTAGTGCCAAAAACAGTATCTGTGTGCTGGATTTCCCTCACTGTGTGGTCCATGAGATGCCTGAGCTAACTGCTGAAAGCCTGGAAGCTGGAGACAATAATCAGTTCTGTTGGCGGAATCTGTTCTCCTGCATCAACCTTCTGCGAATTCTCAACAAACTCACTAAATGGAAGCACTCCAGAACTATGATGCTGGTGGTGTTTAAGTCTGCACCTATCCTGAAGAGGGCACTGAAAGTCAAGCAGGCCATGATGCAGCTCTATGTTCTCAAACTCCTCAAGATTCAGACCAAGTACCTCGGCCGCCAGTGGAGGAAGAGCAACATGAAGACCATGTCGGCCATCTACCAGAAGGTCCGCCATCGGCTTAATGATGACTGGGCCTACGGAAACGATATCGATGCTCGGCCATGGGATTTCCAGGCGGAGGAGTGTGCCCTGCGGGAGAGCATCGAGAAGTTTAACACACGGCGCTACGACAAGAACCAGAACAGCGAGTTTGCACCGGTGGATAACTGCCTGCAGAGCGTGCTGGGTCAGCGGGTGGAGCTGCCCGAGGACTTCCACTACAGCTATGAGATGTGGCTGGAGAGAGAGGTGTTCTCCCAGCCCATCCAGTGGGAGGGCCTGCTCGAGGCCCAGTGATGCTGCCGCTGGGGGAAAAGGACGTTTTAACCCAAAATAGACTTAAACTTAAACAACACACTGTGGGCTCATGAGCATCCCacctgcacacaaacacacacacacacaagcatgcaGACAGAGCACCTGTGCCAACTGTATTCTTCCTGTAAATGAATGCTTGTAAATAGAGATATGTTCAAATACAGTGTATGGGCTTTACATGGTAACCTATTTTACTGGTAATTGATGATTGATTAATAAGAGCACATGAGAATGGGCATGATGCATTctgcacaaaaaagaaaaacaatccaTACAGTATTCTTAAAACGTTAGAGACCacccttcttttcttttccttacACAGTAGGTTACACAATTTTTTTACCTCCAGTTTACCCAAAGATCAATTTTATAGGCTGTTCCAGAGCAATATGCAACGTTTTTTAGTGTTGCTGCGGTGGACCAATCTAGTCGTAGGATTCTTGCCCATTGACTTTTATTGATGTAGAGCAGTGTAGTCacccagactgggaattgaaccccagtcttccttatgatgtggtagctcactggcaggtagtggtgttatccactgtggtgttatccactgcacctcACCAACCAAGTATTTCTAAACACCTGTTTATATATCATATCTGAAacccacataaaaaaaactatgtttaatatttgttttgactgaaaattaaaaaacgaaGGGTGGTCTCTGACTTTGACATTGTACTGTATGTCCTATTAACACTTCTATTGTTCATGATCATACGAGAAACATACGCTGCCTGTTCACAGTTTGGGACACTGCCTTCTTTAAAATGCTTATTTaaaacagtatggaaaatgctttaaaaatgcttttatttcattgcagacaACCTGTGAAtgcatgatgtttttttttaatctgattaaattaaattcgtttttttttttaaaacatccaTTCCTGTAAAAAACACCATATGCAATTTCAATTCTGCACTCAGAGGCAACCTGGATAGACCGTCACacactgtaaatgtgtgttgtgtcaagacaaatctgtatttttttaagaaatgggTGCTTctgactgttatcagcaacaaatcCAAAAGTCAGTGTCTGTTATGGTATGGGGTTGTGTCCttacacttctgtgatgcagTATTTAAACAGAAAATTCCTTTAGAACTTAGTGCAatgcactatatatttttttccggCATGTCCAGTACAAagccacatgctgcacacattataaAGACATGGCTACAGAGGACAAGTGTATAGGTAATGCACtggcctgcctgcctgcctgccctGTTGACCTGTCCGATCTACACTTTTGACATTTAATTTTGCACATCTTAGCTGGAAGAAcgggacaaaataacacctgaaataCTTAAACGCTTAGTATTCCAGTCCCACAATTTCTAATGATGTTGTGAAAAGAAATGGCCATTTTGtgatgtgttgcaggcctgaaatacaGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84477 lncRNA upstream 83716 7617543 ~ 7619396 (+) True G62656
TU84453 lncRNA upstream 100845 7598566 ~ 7602267 (+) True G62644
TU84431 lncRNA upstream 144302 7556771 ~ 7558810 (+) True G62628
TU84423 lncRNA upstream 157402 7545388 ~ 7545710 (+) True G62623
TU84407 lncRNA upstream 227919 7420400 ~ 7475193 (+) True G62608
TU84523 lncRNA downstream 7619 7770742 ~ 7786868 (+) True G62685
TU84550 lncRNA downstream 186715 7949838 ~ 7951452 (+) True G62710
XR_001518662.2 lncRNA downstream 607640 8370763 ~ 8374695 (+) True LOC107197604
TU84651 lncRNA downstream 641564 8404687 ~ 8415039 (+) False rab19
TU84678 lncRNA downstream 670613 8433736 ~ 8434382 (+) True G62807
XM_007252726.3 mRNA upstream 15565 7633393 ~ 7687547 (+) True ahcyl2
XM_022671289.1 mRNA upstream 15565 7661433 ~ 7687547 (+) False ahcyl2
XM_007252727.3 mRNA upstream 17108 7633393 ~ 7686004 (+) False ahcyl2
XM_007252724.3 mRNA upstream 71734 7620814 ~ 7631378 (+) True tmem209
XM_007252735.3 mRNA upstream 90165 7603901 ~ 7612947 (+) True slc5a8
XM_015606733.2 mRNA downstream 3723 7766846 ~ 7770243 (+) True smkr1
XM_022671293.1 mRNA downstream 57232 7820355 ~ 7921224 (+) True LOC103021322
XM_022671291.1 mRNA downstream 57232 7820355 ~ 7921224 (+) False LOC103021322
XM_022671292.1 mRNA downstream 57232 7820355 ~ 7921224 (+) False LOC103021322
XM_007252732.3 mRNA downstream 63118 7826241 ~ 7921224 (+) False LOC103021322
TU84211 other upstream 847350 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 1709118 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 1948828 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 4399114 3296546 ~ 3303998 (+) True G61575
TU84764 other downstream 769636 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 770225 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 1670314 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 1883456 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 4704927 12468050 ~ 12468902 (+) True G63432

Expression Profile