RNA id: XM_022671172.1


Basic Information

Item Value
RNA id XM_022671172.1
length 8847
RNA type mRNA
GC content 0.46
exon number 42
gene id LOC103032294
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12510888 ~ 12556587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGATCCCAGCAGTGGAGTGAGTGTGGAGGTGTTAAAGGTGGATCTCAGAACATGGCTCTGCAGCGGGTCGTTATAGGAGttataatactgatctcaggTCAAATTTTGGTCTCAACAGCACAAACAAATGTGTGTGAGACGTTTGGCAGTGGGGTGATTCAGACCTTCAGTAAGAGTATGTTCTACCTGAAGTCTACATGTCCTTTCACCCTGACCCGCTTCACTCTGTCCGGGGTGACCTGTAGCATCACTGTCCAGCGCAATGCCACCGGCCTCATGAACAGCGTGGAGATCACTGTGAATAAAATCACCACCGTACTGCAGGACGGGAAAATCACTGTGGAAGGAAGCAGTATCTCTCTCCCCTTCGATCACACCTATCAGCTGGTTTATCAGTATGGTGTCTTCATCAAGCTTAGAAGCAAGGTTCTCCCGTTTTCTGCCATCTGGCGCAGTCAACCTGGCGgcatcagttcagtttggGTGCAGCTGGACCATGACTTACTGAGCGACATGGCAGGAGTGTGTGGCCGACTGAACGGTGCAGAAACTCCAGCACAGCTTATATCTGCTAATGTCATGTCTGATGGAAAGTGTGTGACTGAGGATTCTAAACCTCAGAAAACACAGGTTTGTGAGGTCCTGTCTTTTGCTACTGGATGTCCTGGTGGTAAATCTGCGCAAAACCTGTATATTGACCTGTGCTCGCGCATGCCCAGCACTGTGAACGTGTATGCGAAGTGTGCCTTTTTTGAAGAGGTTGCTTTCAGCTGTGGGAATCAGTCCAACTTTTGGTCTGTGTGGAGATCTAAAACCTCATGCTCAAAACCTACCTGTCCTGGAGATCTGAAATTTCAGGAGCTGGGCTCGCCCTTTCCTCCCACCTGCACCAACCCCCAGCCACAGTCAGAATCTTTAGTCAGCACATGTTTACCCCCAGCAGGTATGGTTCTGAATGATCGAGCTGATGGGGATCATTGTATTGATGTGAAGAGTTGTCCATGTGTACATGGAGGGAAAACGTATCCACCAGGAGCAGAGCGCAACTCAAAGTGCCAGTCATGtgtatgCGTCCAAGGTAAATGGAGCTGCTCTGCTAACTTCTGTCCTCCTACCTGTAACATGGAAGGGCAGGCTGTCATGACATTTGATGGTAAACAGTATCGAGTGCCTGGAAAATGTACCTACGTGGCTGCAAGCGGATCCAGCTGGACTGTCACAGTCAAGTATTCTGATACAGATGCATCTATAGCACAGATGTACCTTGATGTGTATCAGGAGAGATACACTTTCTCAGCAAACAGTGTAAAACTGGGACAAGAGGAAGTCACTGATCTTGCTCAGACTGATCACACTACAGTCTTCTGGCAGTCTTCAATGTTTGTTCATGTCCAGACCTCTTTTGGCATGAAGATTAAAGTTCAGGTTTTTCCAGAAATTCAGCTGTACATATTTCTGCCTACATACGTACAGACCAGAGGTCTGTGTGGAATCTATAACAGCAATACAGAAGATGATTTCACCACCAGCAGTGGGATTATAGAGAACGCAGTTGTGCCGTTTACCCAGTCCTGGGCTATAGGAGACTGTAACCCACCAACTACTGTTTTATGTGTCAACACTGACAATGAGATCTTTGCTGAGCAGAAGTGCAGCCAGTTGTGGAATACGAGCAGTGTGTTTGCCCGCTGCCATGATTACGTGCCTGTTAACAGCTTTTTTGATGCCTGTGTTCAGAGAACCTGCCAGTGCACGTCTGGAGTCCAGGGTTGCCTGTGTGTTGCCCTCAGTAACTACGCTAAAGCCTGTGCCAGTCAGGGGATTGATGTGGGTGACTGGAGAGCAGAGGCAGACTGTGGCGTCACCTGTAACGGAAATCTGATGTTCAGCTACACGATGAGCGCCTGTAACCGGACCTGCCGATCCTTAAGCGGCTCGGACCCCACCTGTGACGTGGCGGCTGACTCAGTGGAGGGCTGCGGCTGCCTGGCAGGAACACACCTTAACACCCCACTGGAGTGCAGCTCTAGCGCCCTCTGTATGTGCCACTACCAGGGAGGAACCACACCTCCAGGACCCGTTGTTATTGATGGGCGACAGTGCCTGTGTGAAAATGGAGTTCTCCAATGTTCTGAAGCTTGCGACTGTCCAAAGGGTAAAATATGTGTGCACTGTGCACAAGCATCAGTCAACACAGCTCGGAGGACATGCGAAAGCCTGAGCAAACCATTTAGTGGTGAAGAGACGTGCACCAGTGGCTGCTACTGTCCGGCAGGTCTGGTTGAGGATCACAATGGTGGGTGTGTAACTCAGGATAACTGCACGTGTGAGTTCAGCGGGAGTGTTTACGCATCCGGACAGAGCGTGGTGACAAACTGCAAACAATGCACCTGCAGAGGAGGGCAGTGGTACTGTGAAGGGGAGCCGTGCCCGGGGGTGTGTGAGGTGTTTGGGAATGGACAGTACAATACTTTTGACTCCAAGTGGTATCGCTTCGATGGGAACTGTCAGTACACACTGGTTGAGGATGCTTCTGGCCCCGGGCTGTTTGCAGTCAGGGTGGAGAGTGTGCCATGCTGTGACGAGGCTCTGACCTGTTCCCGCTCCATTTCACTGGATCTCCAGGACGTGGTGACTCTGACTCTGCGGGATATGAATGTGACAGAGACGCAGAAGTCCGGGTGGCATCTGCAGGCTCAGCCCCTGTACTCTGTCCACACTGTGGGCCTCTATATCATCATCTCAGTGCCGGATCTGGGGCTCACTGTGGTCTGGGATAAGCACACCAGAGTCAAAATTGTGCTGCAGGCCAGATGGAAGGGTAATGTGAGAGGTCTGTGTGGGAATTTTGATGGAGTAGTGACGAACGACCTTCTGACCCGGAGCTCCTCGGTGGTGTTCAGCAGTCTGGAGTTTGGGAACAGCTGGAAGACAGCGGTCCCGCCCTGTTCAGACGTCACGCAGGAAGTGTTTCCCTGTGAGCGCCATTCATACTGTGAGGCCTGGGCTCAGCGCCGCTGCATGATCCTGCTCAGCGACACCTTCGCAGACTGCCGCCTAAAGGTCGATCCAACATCCTATTACCAGGCTTGTATTCTGGAGTCATGCTCGTGTGAGTTTGAGGGAAGGTTTCTTGGATTCTGCACAGCTGTGGCAGCATATGCTGAAGCCTGCAATGCACAGAACGTCTGTGTCAACTGGAGAACCCCGGACCTGTGCCCGGTGTATTGTGACTATTACAATGAAGAGAGCGAGAATGGCTGGCATTATGACCTGTGTGGTCAGACTGAGACTTGTGGGAAAAAGCACAGCTTTACTGGAAAACTTGAAGGTTGTTACCCAAGATGCCCTTTAGAGACACCATATTTTGATGAGAACACAAGAAAGTGCTCCAGTTTGGACAAGTGCACCTGCTACTTCAACAACACAGTAGTTTATCCTGGTGGCAAAGTGAGGACATCCAGTGAATGCTGtgaATGCGTTGAAGGACAGCTAGCTTGTGAATACTGTGCATCTACCACGGCACGGTCAACAACCTATTTAACTACAACAGAAGTACCAAAACCTACAAGTCTGCTGACTACTACAGTAACAAACACAACAGTGTCACCAACCACTAAGTTTTCTACAGGAAAATCTACAACTACAACAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATATGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATATGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGAAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATATGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTAAGTTTTCTACAGGAAAATCTACAACTACAACAGTAACAGAGACAACAGTGTCACCAACCACTGAATTTTCCACAGAAAAATCTGAAACTACAAGAGTAACAGAGACAACAGTGTTACCAACCACTGAGTTTTCTACAAAAGAATCAGAACCTTCAACAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTAAAACTACAAAAGTAACAGAGACAACAGTCTCACCAACCACCGAGTTTTCTACAGCAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATATGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTTTACAGAAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTCTCACCAACCACCGAGTTTTCTACAGCAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATATGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTCTCACCAACCACCGAGTTTTCTACAGCAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATATGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGCAACAGAGACAACAGTCTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAAAGTAACAGAGACAACAGTGTTACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGATTAACAGAGACAACAGTGTTACCAACCACTGAGTTTTCTACTGGAGAAGCTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTACAAGAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTTCAACAGTAACAGAGACAACAGTGTCACCAACCACTGAGTTTTCTACAGGAGAATTTGAAACTTCAACAGTAACAGAGACAACAGTGTCACCAACCACTGAAACTCCATTCACTCCAATAATACCAGAGCCAACAACAGCCACAGAAATCTCAAGCACAACTAAAGAAACTGAACTCACAACTCTATTAACTACCACTACACTTGAACCAGTATATACAACCAAAGCCACAACAATGCCACCTATATACACTGGGCCACCTCTCTTACCTCACAATCACACTTCACCTCAAGAATGGTTACAGACAACTCAAGTCAGCACACCTTTCACAACAGCAACAATTTCTACAACAGCGTTCACTGTTCCTCCAGTCTACCAATGCCTCCTACTGTCTCCCTCAGGTCAGTGTGATCTGTATGGCGACCCTCATTATGTATCCTTCTCGGGAACTAAGTTTGACTTCCTGGAAAACTGCACTTACACGCTGGTGAAGGAGAAGATTGCACGCCATCATCTCAGCATTACAGTGGATAATTACTTTAGCAACCCCTTGTTGTTCGGCTCATCGGTCAAGGGCATTGTCCTGAAGTACCATGATGACACAGTCACTCTGCTCGTCAATGATGATTATGGAACAGTGGAGGCTACTCTGAATCAGAATCCAGTCCAGCCACCCTATGTAGAGAATGGCATCAGGTTCGAGGGCACGAATTACCAGATCTTCGTGTACCTTGATGAAATCCGCTCTCACGTCTCTCTCGATCCAGACAACACCCTTCAGATCACTCTGGCCATGGAGAACTTCCAGGATAACACTGAAGGACAGTGTGgtgtgtgtggaggagccTCGTGTGTGCGCAGGAATGGACAAGTTGAAAGTGAGGACTGCTGTAACATGACGGCCTATGAGTGGATAGAGGAAGACCCTCTAAAGCCCTACTGTGCCAGCATCCCCAAACACGAGTCCTGTTTCCCCATCATCCCCGGCACCGTGGAGCCACCACCAATCTGCGTCGCCCCTCTCTGTGACCTCCTCACACACGAaGTGTTTCGTGAATGCAGTGAGAATGTGGATGTGGAGACGCTGGTGAAAAACTGCAGGTTTGATTACTGCGTTGCTAAAAGCAACAGCAGCATCTGCTCCCCACTGCAGCACCTCAGCGAGCAATGCAAGAGACTGGGCTACTGTGTGTACTGGAGAAACCTCACTGAGGGGGCCTGCGATGTCACATGTCCAGACGGGATGGTTTTTGATGAGTGTCGCAGTACTCCAAATGACGTCTGTAAAGGAGGAGTGCGTGTACCATGGAAATTTGGTACTGACAGCATGAGATCTGGGTGCTTCTGTCCAGATAACCAAACTCTTGCTGAGGAATACAAGACGACCTGCGTTTCAGATTGCACCAATTGCAAAGGTCCACTGGGAGAGCCCATGCCGGCTGGAGCAATATGGGAGTCACACTGTCACATATGCAGATGTAACAACCAGACCCTGACTGAAGAGTGCTCACCAATGCCTACGACTCCAAGCCCCCAATGCAGTGAAGACTCCACACTCGTCTCAGACTGCTGTGACAACCAGATATGTGTGGAGAAGACATGTGAACACAATGGAAAGACCTACAAGGTGGGGAATACGTGGAAGGATCAGTCCCAGCCCTGTGTGACATACAAGTGCACAAGAGCAGGCACTGAAATACAGACGAGTGTGTGTCCTGAGCAGAGCTGCTCTGAGGAGCTCCGTGTGTGGGACGAACACCACTGCTGCTTCTCATGTAATGTAAGCTGTGCAGTCAGGATGACCACAATGACTGTCACCCTGGAAGGCTGCACTCAGGAGGTGAAGATACCCAGCTGTGAAGGACACTGCCAATCAAACACCATGTGGGTGAGGTCTGGAGAGGTGCTGCAGCTAGAGCCGGAGCGCCGCTGCTGTCGGGAGAAAAAGTTTGAAACCAGGAAGCTCTCTCTGAGCTGTAAAGGTGCCGCCCCCACCCACTACGCCTACAATCACGTCACCAGCTGTGAGTGCCAGCCTGACGCCTGAAATCCCACCACCTTCAGatcagcattagctttagcattacaATAAAGTGGGGATGAAATGGGGATGTGGGCTTTATATATTTCAATgttgtttgatttgatttaagtgattgatttatttgatgAAGATTTGCACTGATTGTCTCTTtgcttttttgccttttttatgaTATGTGGTGTTTTATTGTGTCCTtaaattgtgtgtttaaatctgtatcattaaaatcatagtgaaatattaataaatagaaaaatgg

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85543 lncRNA upstream 131961 12377146 ~ 12378927 (+) True G63410
TU85450 lncRNA upstream 503369 12007285 ~ 12007519 (+) True G63329
TU85449 lncRNA upstream 520492 11986998 ~ 11990396 (+) True G63328
TU85415 lncRNA upstream 535335 11956885 ~ 11975553 (+) True G63303
TU85397 lncRNA upstream 699298 11811156 ~ 11811590 (+) True G63285
XR_002650191.1 lncRNA downstream 132732 12689319 ~ 12696748 (+) True LOC111192954
TU85623 lncRNA downstream 142461 12699048 ~ 12746828 (+) True G63460
TU85629 lncRNA downstream 251280 12807867 ~ 12811899 (+) True G63465
TU85656 lncRNA downstream 601738 13158325 ~ 13162362 (+) False G63488
TU85657 lncRNA downstream 601738 13158325 ~ 13163098 (+) True G63488
XM_022671347.1 mRNA upstream 137519 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA upstream 137519 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA upstream 137519 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671349.1 mRNA upstream 137519 12362473 ~ 12373369 (+) False c7h12orf40
XM_007234936.3 mRNA upstream 513031 11990600 ~ 11997857 (+) True alg10
XM_022671351.1 mRNA downstream 2073 12558660 ~ 12595497 (+) True LOC103032798
XM_022671352.1 mRNA downstream 47523 12604110 ~ 12626928 (+) True LOC103033113
XM_022671353.1 mRNA downstream 47523 12604110 ~ 12626928 (+) False LOC103033113
XM_022671354.1 mRNA downstream 76692 12633279 ~ 12650099 (+) True LOC103023853
XM_022671356.1 mRNA downstream 96435 12653022 ~ 12658646 (+) True iapp
TU85565 other upstream 41986 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 2860801 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3070324 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 3970765 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 3977656 8532759 ~ 8533232 (+) False LOC103041471
trnag-gcc_1 other downstream 102861 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 599639 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2188148 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3865647 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3882633 16439220 ~ 16442449 (+) True G64289

Expression Profile