RNA id: XM_022671175.1


Basic Information

Item Value
RNA id XM_022671175.1
length 1578
RNA type mRNA
GC content 0.47
exon number 2
gene id fam200b
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14997118 ~ 15000582 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACGTTCGGTGAGAAGATGGCGAAACGCAAATACAGCCCGGAGTATCTGAAATGTGGGTTTTCGTTCATTGAGGACAAACAGGGTCAGAAACCCCAGTGTGTCATTTGCAATGAAGTGCTGGCACATGCGAGCATGAAACCCTCCAAACTAATGAGACATCTACAAACGAAACATCCCGCATATAAGGACAAGCCGGTGGAGTTTTTTCAAAGACGACTTCATGAGCTAAAGGCATCAAAGAAGTGTCTGACAGCATCGTGCTCCAAACAAGAGCAAGCGCTCCGGGCGTCTTACCACGTAGCTTTCCGTATTGCGAAGGCAAAGAAACCCCACACAATAGCCGAAGAGCTGATTTTACCTGCTGCAATGGACATGGTAAGAGAGGTGCTGGATGGTGCAGCGGCAGACAAACTTAAAACAATACCCCTGTCCAACGATACTATAGCGTGGCGTATTAAAGACATGTCTGATAACATAAAACAGCAGACTACAGCTCGCGTCCAGACAAGCCCATACTTCGCATTACAGATGGATGAATCCACGGACATAGCTAACCATGCTATTTTACTGGTTTATGTGAGACATGTGTGGGATGGTGATTTGCAGGAGCAATTTCTCTGCAGCAGAGAACTCCCCACCACTACCAAAGCAGAGGACATTTTCAACTCCGTGGACTTGTACTTGAGCTCAGTGGGTTTAAGCTGGGAATACTGCATTGGAATCACAACTGACGGCGCTGCCTCCATGACCGGGAAACACTCAGGTGTGGTGAAACAAATTCTGACGAGGGCACCTAATGCGACTTGGAACCACTGCTTTTTGCACCGAGAGGCACTGGCGGCTAAGAATATGGTTCCTGATCTTAATGAAGCTTTGCAAGATGTCATCAAAGTGGTGAACCACATAAAACGGAGTGCTAAGAGCAGCCGCTGCTTTTCAAATCTATGCAAAGATTTGGGCTCTGAGCACATGCAGGTGTTGTATCACTCCGAAGTGCGCTGGCTGTCGAGGGGTAAGGTCTTGTCACGCTTTAACGAACTAAAAACAGAAATCGCCACCTTCCTCTCAGAGAACAACTCCGTATatgctgaactgtttgacaaTAACACCTGGCTCGCACTTGTTGCATATCTTGCTGATATTTTTGAGCACCTCAACGCGTTAAACGTGTCTATGCAGGGAAAAGGACACAACATTTTTGAACAGTCAGACAAAGTTGTTGCGTTCAAGAAAAAGATCACACTGTGGGTAAATCATTTATCCAAAGACAGACTGGACATGTTTCCAAACGTTCGCCAGGAAGTACAGCAGCTGGACACCACGGCCaaaaattacctgaaaaaaaCGATCAAGGAGCATCTCAGTAAACTTCAAGCTCGGTTTGACGACTACTTCCCTGAGAGGCACGGAGATAATAGTAATGCCTGGATACGCGACCCTTTCAGCGTCAACATGGAAAGCGTCATGTTACCAAGCAACGAAGAACATCAGCTGGTGGAGCTGTCATGTGACCAGACACTGAAAAAGAGATTCGGCGACaacccaagtacacctaaGCTTGAGGTGAACAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86470 lncRNA upstream 5110 14991203 ~ 14992008 (+) True G64057
TU86419 lncRNA upstream 38850 14953831 ~ 14958268 (+) False G64047
TU86432 lncRNA upstream 39656 14952735 ~ 14957462 (+) False G64047
TU86412 lncRNA upstream 40753 14952735 ~ 14956365 (+) False G64047
TU86430 lncRNA upstream 40753 14953831 ~ 14956365 (+) False G64047
TU86480 lncRNA downstream 4430 15005012 ~ 15035836 (+) True G64067
TU86499 lncRNA downstream 56549 15057131 ~ 15057391 (+) True G64083
TU86503 lncRNA downstream 71957 15072539 ~ 15072799 (+) True G64086
TU86509 lncRNA downstream 90389 15090971 ~ 15091193 (+) True G64088
TU86512 lncRNA downstream 122429 15123011 ~ 15123221 (+) True G64091
XM_022671389.1 mRNA upstream 269763 14721032 ~ 14727355 (+) True LOC111192957
XM_022671390.1 mRNA upstream 269763 14722914 ~ 14727355 (+) False LOC111192957
XM_007234986.3 mRNA upstream 754884 14219485 ~ 14242234 (+) False gata3
XM_007234987.3 mRNA upstream 754884 14226439 ~ 14242234 (+) True gata3
XM_007234988.3 mRNA upstream 756696 14226436 ~ 14240422 (+) False gata3
XM_007245020.3 mRNA downstream 421419 15422001 ~ 15426787 (+) True LOC103045633
XM_022671152.1 mRNA downstream 563435 15564017 ~ 15571205 (+) True LOC111192874
XM_022671394.1 mRNA downstream 903760 15904342 ~ 15923062 (+) True ccdc87
XM_007245047.3 mRNA downstream 903760 15904342 ~ 15923062 (+) False ccdc87
XM_022671395.1 mRNA downstream 903760 15904342 ~ 15923062 (+) False ccdc87
TU86374 other upstream 252036 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 1835798 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 2337600 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 2528216 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 5347031 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 1421652 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 1438638 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 1752461 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 1832714 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 1863936 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile