RNA id: XM_022671180.1


Basic Information

Item Value
RNA id XM_022671180.1
length 1661
RNA type mRNA
GC content 0.39
exon number 6
gene id stk19
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17721129 ~ 17731699 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAAAAGGCTGCTGTTAACTTCTGACGACAAAGCAATTACCATTAGTTTAAATTTACTTAACTTGTCCATCACTACAgaactccaaacttcatgtagattcagattttttggtatatttatatatatatttaatctgttttctctttttttgtgtaaagCAGATGGACCTCCTGATGTTAAGGCCACACTTCAGTATCTCATGACTCTTTTTCCTCGCAAACTTTTCAACGACAGCCTTCCGCAAATCGTCTTCAAGCACCAGCTCTACAGTTTACACAGCGACAAAACCTTGGTGGACAAGCAAGtgAATGAATTGAGAGATAAGGGGGAACTGCTCATGTTCCAGCTGGGTTTCGGCTCAGATGCCTTTGGCCTGGTGTTTTCTGAGGACTACAGAACCAAAGTTCTGGCCATGGAAGATGGAAGATCCACTCTGGGAACGGTGGAGAAGTTTCTGGATAAAGTTCTGCCTGGATGCTCAGACCTGAGTTTCAGCAAAGACAAAATGCTGAAGCACTTCCTTTTCACTGATTCAGAAATAACGCAGCTTGTGAAGTCGGGGGTGCTGACTGTGAGGGACGCTGGCAGCTGGTGGTTGTCTATTCCAAACTCGGGCCGGTTCACCAAATACTTTATACAGGgacGCAAGGCTGTTCTGGGCATGGTCAAGAAGtcaaaatacaatgaaatattaAAGAACGATTTGCAAGAACGACGCACCACTTCACATGTTAAACTAGATATAAAATACCACATTCATGATATTATTGGAGCAGAACTGGTGGAATGCATACAGACCACATCAGGAACCTTGTTACGATTTGTGGACACTTGATAATGAATTTATCAACTCTTTGGAGAGGAAAACAATGAATGGCCTTAAGAACAAAATCGAAAAAACTCTGGGAGGCATGAGATCAATTCCTCCCTGTCGTTTTCATGCTTCGTACCGCGAGATGTTCAGCACACAGAAGAGGGATGAACTACTGGTCTTGGATCACTGGTTTTTGATgccaaaaaatgtgaaatgtgcaATATAGCCACTTTACTTTCTGTACACAACAacacaaaatttttttttgctttcgaagagatttttgcttatttattgtttaaatttaGTAGCTCTTCTGTTACATCTGTGCGCAAGTTTCTGTTActtgaatgtatatatattgaaataaataacGTAGCAATTGAGTTGTTATCTTTTGCTTTAATTTATCGACTTTTTTGCTTCAAGTAGGACATTTTTACTCCTACAGTTGGTCTGGTTtggcacagaaaaaaaatccatgcaCACCTAAATGCATCACAATGAACAACATAAGAATATTTGTTTTCTTATCTGCTGATTGGTCAGACCTGTGTGGGGTGGAGCAAgcaagtaaatacaggaagaaggagaGAAGAAGCTGTAATTGGAGAAGTTGTACAGCTGAACCCTTTTAATAGAACATTGACTActgatgaactgagccaatcacaacccTCGCATTAAGTTGACCCTAtcactgcccagccaatcacagctgatGCAAGCAGCCACGCTTATAACTGTGTTAATTGTGGATGTGGAGGTCCAGCGCATTGCAGAAAATACATTTCTATATTGTTATGAAATATTTGCCAAATAAAAGTGAAAtcattgtgttttaa

Function

GO: NA

KEGG:

id description
K08880 STK19; serine/threonine kinase 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87520 lncRNA downstream 1218 17690229 ~ 17719911 (-) True G64835
TU87521 lncRNA downstream 1218 17699106 ~ 17719911 (-) False G64835
TU87528 lncRNA downstream 5687 17707996 ~ 17715442 (-) True G64841
TU87312 lncRNA downstream 31842 17678814 ~ 17689287 (-) True LOC103043390
TU87313 lncRNA downstream 42464 17677102 ~ 17678665 (-) True G64692
TU87545 lncRNA upstream 37548 17769247 ~ 17815728 (-) True G64857
TU87563 lncRNA upstream 79477 17811176 ~ 17953544 (-) True G64867
TU87582 lncRNA upstream 148751 17880450 ~ 17882420 (-) True G64882
TU87601 lncRNA upstream 245848 17977547 ~ 17978089 (-) False G64898
TU87602 lncRNA upstream 246056 17977755 ~ 17978089 (-) True G64898
XM_022671452.1 mRNA downstream 31817 17682267 ~ 17689312 (-) False LOC103043390
XM_022671179.1 mRNA downstream 56568 17591701 ~ 17664561 (-) False LOC111192911
XM_022671176.1 mRNA downstream 414053 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 624304 17046363 ~ 17096825 (-) False LOC103042974
XM_022671442.1 mRNA upstream 51053 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 75375 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 108480 17840179 ~ 17855162 (-) True ush1g
XM_022671425.1 mRNA upstream 110277 17841976 ~ 17855162 (-) False ush1g
XM_022671454.1 mRNA upstream 152921 17884620 ~ 17920811 (-) True hid1
TU87272 other downstream 123584 17586845 ~ 17597545 (-) True LOC111192911
TU87588 other upstream 196808 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 911672 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1166486 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1166486 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1548603 19280302 ~ 19284032 (-) True G65231

Expression Profile