RNA id: XM_022671187.1


Basic Information

Item Value
RNA id XM_022671187.1
length 1599
RNA type mRNA
GC content 0.60
exon number 1
gene id LOC111192915
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24459403 ~ 24461001 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGACGGTCCGGGTTGCCATGGAAACCATGGGAGAGCCCACCGCGGGACAAGCCAGGagtgttattgttatttaataCTCGGGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGCAGCGCGGGGAGTAAATCCAGAAGCGCGGGGAGTAGCCAGGTGAGCCGCTGTAGGAGTGCTCTTTTGACCAACAAACGAGTTACGTTTCAGCTGATCCAGTCTAATAGCCAGGGAAATCAAGTCATTCATGGGAAGACCGTCATCTTTACAAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89752 lncRNA upstream 45125 24408520 ~ 24414278 (+) True G66524
TU89753 lncRNA upstream 47286 24408520 ~ 24412117 (+) False G66524
TU89739 lncRNA upstream 69629 24384919 ~ 24389774 (+) True G66514
TU89699 lncRNA upstream 135371 24323810 ~ 24324032 (+) True G66488
TU89690 lncRNA upstream 228217 24223005 ~ 24231186 (+) True G66480
TU89786 lncRNA downstream 44340 24505341 ~ 24505541 (+) True G66556
TU89790 lncRNA downstream 87216 24548217 ~ 24552340 (+) False osgep
TU89796 lncRNA downstream 88860 24549861 ~ 24552340 (+) False osgep
TU89814 lncRNA downstream 118152 24579153 ~ 24579353 (+) True G66577
TU89911 lncRNA downstream 257596 24718597 ~ 24718895 (+) True G66643
XM_022671556.1 mRNA upstream 76381 24368373 ~ 24383022 (+) False rpap3
XM_007229748.3 mRNA upstream 139337 24296917 ~ 24320066 (+) True lrig3
XM_015602945.2 mRNA upstream 341690 24026461 ~ 24117713 (+) True LOC103023565
XM_015602946.2 mRNA upstream 341690 24026480 ~ 24117713 (+) False LOC103023565
XM_007239002.3 mRNA upstream 505683 23916306 ~ 23953720 (+) False etv6
XM_007229740.3 mRNA downstream 49488 24510489 ~ 24517356 (+) False LOC103034593
XM_007229739.3 mRNA downstream 49489 24510490 ~ 24517356 (+) True LOC103034593
XM_015605311.2 mRNA downstream 64366 24525367 ~ 24545081 (+) False osgep
XM_007229737.3 mRNA downstream 94600 24555601 ~ 24559622 (+) True LOC103033942
XM_007228543.3 mRNA downstream 138165 24599166 ~ 24647676 (+) True lingo1
XR_002650203.1 other upstream 76381 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other upstream 76381 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other upstream 76381 24368373 ~ 24383022 (+) False rpap3
TU89518 other upstream 749327 23698152 ~ 23710076 (+) False LOC103027234
TU89474 other upstream 975470 23483333 ~ 23483933 (+) True G66303
TU89793 other downstream 57621 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 184725 24645726 ~ 24684580 (+) False lingo1
TU90292 other downstream 1628831 26089832 ~ 26092089 (+) False LOC111192916
XR_002650161.1 other downstream 3035794 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 5096135 29557136 ~ 29558666 (+) True G67459

Expression Profile