RNA id: XM_022671247.1


Basic Information

Item Value
RNA id XM_022671247.1
length 3337
RNA type mRNA
GC content 0.48
exon number 18
gene id mcm10
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4083683 ~ 4099389 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TatcatattttaacatttttcgcGCCACCgcagagcagcagcagacgGGAACGGGCTGAACAACATTTTACCTGGATTTGGAGTCCATATTCctgatatattaaatatttaggaATATAATAAGCCCGGTACTGTAGCATTGTTGTGATTGGTGTGTTGCTGGTGTGAGAGCTGGGGGGCGGACTGTGTGTTATTCTGTTTTTGAGTTCAGCAGAACAAATCGACAGATCTGTTCTTCAGAGCTACAGATTCATTTGACCCTGAAAAAATACTGAACATCAGACTCATCAGAATCTTCCATCAGATAAACACAGCGCTGCTTCAGTTCAGAGAGAAGGACTGGAGCTGCAGAGATGACTGCAGAGGATGAGAACCTGGACCTGCTGCTTTCCTTGTTTGAGGAGAGTCAGGGTGAGAAGATAGAGACTTCTGCTGCTGGAGAAGAGGACAATCTGGATAATCTgtttgatgatgatggtgatgaaggaGAAGCCTATGCTGagccagaagaagaagaagcagaagaggtTGTGGAAGCTGCAAACTCAAGTGCAGAAGTGGAAAGTGAACTCAATAAATCCAAAGAGGACTTGGAGGCGGAGTTGAGGAGCATGCGTGAGAAGATGCAGAagctacagcagcagctgcaggcaTCTCAGAAAGGTGCAGATTATAAACCCAAACCTGCTGAAGATAAACCCTCCTCACAGAAACAGATAAGCAGCAGAACTTCACCAGCAGCAAAGCTTCCTGCCAAGCGCCTGACCTCTCCTCAGCAGTCTAGCAAACCTGCTCTACAAACACGTCTTCCCAGCCAATCCCCCCCATCTGCACCGAGAGGGGCTATAGGGTCTCCACCTCTAGAAACAGAGGGCAGGCAGATAACTGCACACCAAGCCAAAGCAGCCTCTGCAGAAAACCGGAGTGTGCAGAGTCAGAGTGTGGGTGACAGGTTGTCACAGCCGATGAGAAGTAGCGGTAAAATTAACAATACCATGACGTCACCGCCACCAAGTAAAATGGCTGGTGTAGCTCCTCCCATTGCAAGACAAGCCACACCCCGACCACCTTCTACTCAGGACGTTGCTGTGGAGAAATTCTCAGGTCTTCGTCTAAGgagaccTCGTCTGTCCTCGGTAGAGATTGAAAGCAAAATGGCTAACCGCAGGATGATCAAGCTCTCTCAGCTGCCTGATCGACTCGCCAAAGACAATCTTGAGGACAGTGACTGGGTTACCTTTGCTGTGGTCATAAATAAAATTACCCCGCAGAGCAAGAATAATGGAAAAACGTTCAGTATCTGGAAGCTGAATGACCTTCATAACCTGGAGGTGAATGTGTCGCTCTTTCTCTTTGGGACTGTTCACACTGACCTATGGAAGACAGACACTGGGACGGTAATTGGCATACTTAACCCCAACCAAATGAAGAATAAAGAAGGCTCTAATGAGCTTTCCCTCACAGTGGACCACCCACAGAAGGTGCTAATGATGGGAGAAGCTATGGATTTTGGTACTTGCAAggctaaaaagaaaaatggagatTCCTGCACCCAGTTGGTCAATATGtatgaatGTCAGTTCTGCCAGTACCATGTTAAAGCTCAGTACAAGAAGATGAGCTCCAAGAGAGCGGAGCTTCAGAGCAGCTTCACCGGATCAGCCCCTGGTAAAGTGAAGAACCGGGGAGGTTTGAGAGAACGCTTGTGTCAGGGTGACTTCCACTACGGGGGCATGTCTTCACTTGCTTGTGCACCATCTGTGACTGCCCCACAGCCAAAAAAACAGCCCTCAATCCAGTCGGTTTTGGCTTCTATTCCTAACAAGAAGCTTGcactTAGTTCAGGCGAGGTATCCGGATGTACTGATGACTTCAGAAGCCTAATGTCAATGCCTACACCGGGAGCACTTAATATAAAGAGACATTTAGGAAAATCTAAACCAACAGATTCTTCTGGATCAACTGTTCAATCTATCTCTGCCTCAGACCTTCTTAAGCAGCAGAAACAAATGCACAAGCAAAGACTGGAGGCCAGACAGAAGAGGGCAGAAGAGATCCAAAAAAGAGTTATGCAGAAAACCAGGGGTGCTGCTGTTCCAGCTAGACCCGCTGTAAACAGGGGTGCGCTGCTCTCACCCAAAGCTGCATCAGAGGTTCCAAAACGTTCCTCTCCACCTGAACGACGTCTCAGTGCTCCTCCTATACCCACCCTAGGAAGAGGATTTTCAGAGGGGGATGATATTCTCCTGGACATGTCTCCTCCTCCTCGTTCAAAGAGCCTGTCTTCTGCAAAGCTAGCTGCAGTGAGAAAGCTTCAGGCTAAAGGAGGAGCCATAGTTAAAGACGACCCAAACGCTGTGAAACGCAAGCGGTCTGACAGCGGTGCGATCAGCGCCAGAGTGGAGCGCAGCCTGACTTCACCTGAAGGTGATAAGAATGCTGCTGATGTGGAGGAAGAGGAGCCAGCTCAGAAGAGGAGGCGGGAACAACTAGAATACATCCAATCAGAGGAGTTTCAGCGCATTCTCAATGCAAAGTCCTCAAACTCCTGGATTATGGGAGAGGTGGAGGCACAGGCCATGCAGGACTACTTTGATCCGCTTGTACAGAAGGAGAAGCTGGAAGAAAAGATGAGGGGCATCAGAGAAATGAAGTGTCGAGCGGTCACCTGTAAAAACTGCAAGTACACTCACTTCAAGCCGGCTGATCGTTGCGTGGAGGAGAAGCACGACTACCACTGGCATGATGCCACCAAACGCTTCTTTAAATGCCCATGCGGCCAGAGAAAAATCTGCCTGGCCCGGTTACCCACTGCAGCTTGCAGCAACTGTGGGCTGTTCAAGTGGGAAAGGGACGGCATGTTGAAGGAGAAGAAAGGACCAAAGATCGGAGGAGAGCTGCTGCTGACACGCGGTGAAGAGCAGCCCAAATTCCTCAACAGTATGAAATAGGGCCAGCAGCCTCCCTCTGCTGCCTGACTCCATCCCTCTGGAGTCGTTCACTCAGACGCTGCTAAAGGAAACAAAGCAGTTGAAGCTGGAAAAGTCTCTCCGGCTAGAGGCTGCGGCAGAACTGTTTATGCTGATGGGGTTCATGCTCACAGGAGGCCTGAATGGGATTCGAGCTGTCGCAGTCCATTTGAAACTTGATTTGCTTTTTCTTACCTCATCAGCTGGCTGTAATCAGCTgtatgtttgtctgtttttatttgtttgtatgtgATAAtggatttttaatgatttttaaaagtttttcctGTTTATGAATGTTTGTGTCATGTGTGGCTGTGGTAAACAGCCTAAATTAAACTAGCCAGAAGGCTCACATTCCATGCTCA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83399 lncRNA upstream 26724 4056439 ~ 4056959 (+) True G61804
XR_452999.3 lncRNA upstream 39375 4011384 ~ 4044308 (+) True LOC103028258
XR_002650148.1 lncRNA upstream 369435 3713557 ~ 3714248 (+) True LOC111192865
XR_002650147.1 lncRNA upstream 370260 3712242 ~ 3713423 (+) True LOC111192864
TU83212 lncRNA upstream 385902 3695234 ~ 3697781 (+) True G61657
TU83415 lncRNA downstream 23293 4122682 ~ 4122963 (+) True G61815
TU83385 lncRNA downstream 30928 4130317 ~ 4131090 (+) True G61790
TU83380 lncRNA downstream 32374 4131763 ~ 4136771 (+) True G61786
TU83463 lncRNA downstream 43672 4143061 ~ 4143691 (+) True G61852
TU83484 lncRNA downstream 220463 4319852 ~ 4325034 (+) True LOC111192934
XM_007232266.3 mRNA upstream 9120 4048242 ~ 4074563 (+) True LOC103027723
XM_007232267.3 mRNA upstream 9120 4052342 ~ 4074563 (+) False LOC103027723
XM_022671245.1 mRNA upstream 9120 4054051 ~ 4074563 (+) False LOC103027723
XM_007232269.3 mRNA upstream 114727 3956662 ~ 3968956 (+) True atxn10
XM_022671244.1 mRNA upstream 133949 3937491 ~ 3949734 (+) True LOC103029111
XM_007252707.3 mRNA downstream 575970 4675359 ~ 4701435 (+) True LOC103041372
XM_022671258.1 mRNA downstream 1151744 5251133 ~ 5261551 (+) True ifrd1
XM_022671166.1 mRNA downstream 1322379 5421768 ~ 5423304 (+) True LOC107197570
XM_022671267.1 mRNA downstream 1641166 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 1653913 5753302 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 779685 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 779685 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 2148184 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 2261907 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 2262348 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 1646815 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 1882984 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 2751841 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 4433370 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 4433959 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile