RNA id: XM_022671256.1


Basic Information

Item Value
RNA id XM_022671256.1
length 1701
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC107197701
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4447876 ~ 4461525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGTCCTCGTCGTGtggcttgtgtttgtgtgtttgcagcAGGTCTAGGACAGTGGTGTAGGTCAGAAAGGTGGGCTGCACAGCAGGAGGCGTAACAGAGGAGCTATTTTGGGGGCGCCGTTCACATGTGGGAGGAGAGGCCATAAATCAGCCATCAGAAATCCACTACACTGATTTCTCCTCCACCATCGCTCATCTGACCACTCTCTAACCAACACTTCTCCATACAGGGCACGTAGCGCAAGGTGACCATGTCTGAGGGACCGAGAAAGTCTAAAAAATCAAGATCCAAGCCCACGTCCAATTACTCAGCCACGCGCCGGCTGATGCTGAAgACGAAACTTCTGAGGAAGGCAGAGAGTTTACTGGATAAAGAGCAAGATCAGAAGAGAATAGAGCGAGAGAACGTTCTGAACGAGAGAGCGCCTCCTCTCAAACTCTCTGGCCTCTCAGTACAGGAGCTGCAGGAACTTTGCAAGGATTTACATCACAAGATTGATATAGTGGATGAAGCGAGATATGACCTTTTACTCAAAGTGGGCAGAAACGATTCAGAGATCCAGTCACTGCACCAGAAAATCTACGAGCTGAAGGGTAAAATGAAGAGACCCAagctgaagagagtgaagaagTCAGCAGACGACATGTTGGGAGCGCTGACGGACAACAAGCTCATGAAGGCTGACTTCAAAGCCAACCTGAAGACAgtgaaaaaggaagaagaaaagAAAGAGGAGGTGACAGACTGGAGGAAGAACGTGGAAGCTATGTCTGGGATGGAGGGCAGAAAGAAGATATTTAATGCTGGCCAGTGAAGCATTGGCAAattatttttatctcttttttaaaaaaacatttttttgagcAAAGACACAGTTCTGCAAAACATGGGCCTAGTTGTTTAAAGGTAAAGATGGGTATCTGCATATGAAGGCACATATTCTGGGGCAGTTTTGTGcgtttgggtttatttttgtgtgaCTGTTTGAAATTTCGAAAAACATTAACAGATCAGCCATTTGTCTACAATAATAAAGCATAACATTGTGACCACTTCCTTTTTTCTACATccattatcattttttaaatactattttttatacttagctccactgagcatataaGGTATAAGGCCAcctttatagttctataattacactttatttattatatattcacTGTTGTGAGGGGACATAGTGTTTAAaatctccagcagcactgctgtgtctgatccaaaTCACTCAGGTTCCTAgctctgtcaggtggcattagccgctaaccgttaGCGGTCAGCcgtatgaaaatatgaaaatagaccagaaaatagacgtttattgatagacGTGCATCTTATAATCTAATTTGAAAATAcggtatacagagaaacagatacagtactacagtctgtaattatagaactacacagTGTTCcaatatgctcagtggagctaaaaaaaaaaaaggtaataggtTTAAAAACAAGGAGTTGGTCATATTGTTATGCATAATCAGTGTGTTTTGTAACACAACACTGACTCGCATGATATGTTGACTCATGATCTATTtctaatatatgtgtgtgtgtattgtcaGGAGAGAAGGATTAGACTGTGGAACAACCTAATATTCCTATCATGTcaactgtgtaaatatttaaatcatattctgcatgattaaaatgaataaatttatCCTGTGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83479 lncRNA downstream 134137 4312049 ~ 4313739 (-) True LOC111192867
XR_002650149.1 lncRNA downstream 134151 4313026 ~ 4313725 (-) False LOC111192867
TU83467 lncRNA downstream 298059 4149551 ~ 4149817 (-) True G61856
TU83462 lncRNA downstream 316912 4130339 ~ 4130964 (-) True G61851
TU83444 lncRNA downstream 348495 4083724 ~ 4099381 (-) False G61837
TU83538 lncRNA upstream 61634 4523159 ~ 4523371 (-) True G61907
TU83561 lncRNA upstream 135041 4596566 ~ 4596986 (-) True G61930
TU83571 lncRNA upstream 159197 4620722 ~ 4621086 (-) True G61940
TU83572 lncRNA upstream 160086 4621611 ~ 4621826 (-) True G61941
TU83574 lncRNA upstream 162362 4623887 ~ 4624210 (-) True G61943
XM_022671254.1 mRNA downstream 21720 4335118 ~ 4426156 (-) False LOC103039416
XM_007252700.3 mRNA downstream 65826 4335118 ~ 4382050 (-) False LOC103039416
XM_022671255.1 mRNA downstream 65829 4335118 ~ 4382047 (-) False LOC103039416
XM_007252702.3 mRNA downstream 65831 4335118 ~ 4382045 (-) False LOC103039416
XM_022671252.1 mRNA downstream 113864 4318440 ~ 4334012 (-) False LOC103040249
XM_022671257.1 mRNA upstream 539425 5000950 ~ 5199612 (-) True LOC103023194
XM_007252710.3 mRNA upstream 853032 5314557 ~ 5336399 (-) True LOC103042505
XM_022671259.1 mRNA upstream 995184 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 995184 5456709 ~ 5494645 (-) False LOC103037729
XM_022671261.1 mRNA upstream 1182984 5644509 ~ 5653023 (-) True cmas
XR_002650185.1 other downstream 65825 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 65826 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 789608 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 899174 3544185 ~ 3548702 (-) False mdm1
XR_002650183.1 other downstream 899205 3529527 ~ 3548671 (-) False mdm1
TU83573 other upstream 160688 4622213 ~ 4622577 (-) True G61942
TU84110 other upstream 1912944 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 2171485 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 2210085 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 2260577 6722102 ~ 6723530 (-) True LOC111192868

Expression Profile