RNA id: XM_022671257.1


Basic Information

Item Value
RNA id XM_022671257.1
length 7513
RNA type mRNA
GC content 0.52
exon number 53
gene id LOC103023194
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5000950 ~ 5199612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAATGCCAGTGAGCGGAGGCTGAGGAGCGGAGAGAGCGCGGAGCCTGAGCCGAGAGAGAGCAGCTCCTCCCCGGCGAGCCGCTCACCGCACACCCGCAGCCATGTGGCTCCCTACCGAGCAGGATAAATACGGCGTGGTGTTGGCCAGTTTTCGTGGGACGGTGCAGAATGGCCTGCCTCTGGAGATTGGAGACACGGTACAGATCCTGGAGAAATGTGAAGGCTGGTACCGGGGCTTTGTCCTTAAGAACCCAAACGCCAAGGGTATTTTCCCGTGCAGCTACATTCATCTGAAAGCCGCTGATATAAAGAATAAAGGGCAGTTTGAGACGGTGGTACCTAAAGAAGACACTGTCATCACAGAGATGACCTCCACCTTGCGGGACTGGGGTACCATGTGGAAGCAGCTCTATGTGAAGAACGAGGGGGATCTGTTCCACAGGCTGTGGCACGTCATGAACGAGATCCTGGATCTGCGGCGGCAGGTTCTGCTGGGTCACCTGACCCACGACCGCATGAAGGACGTCAAACAGCACATCACTGCCCGCCTGGACTGGGGAAACGaGCAGCTTTGTCTGGACCTGGTCCCTCGGAAAGACTTCAGCATGGTGGACCCTGATGACATCAGTGTGACTGAGCTCTACAGACTGATGGAACACCGGCATCGTAAAAAGGAGACGCCGGTTCCTGCAAGTACGCATCACCTGTTCGTCCACATGAAGAGCCTGATGAGCTCCAACTTGGGCGAGGAGCTGGAGGTCTTCTTCTTCATCTATGACAGCAGAGAGAACAGGCCACTCAGTGAAAGGTTCTTTGTGAAGCTCAATAAGAACGGAGTGCCCAAGTCTCCAGAGAAGACAGAGAGGCAGTGTACGCTTTTTGTGGACTTGGGGAGCGGTGACCTGAGGAAAGACGTCTATATTGTTGTGCACATCATTAGAATAGgacGGATGGGTGCTGGCGAGAAGAAGAACACGTGCAGTGTGCAGTACAGGCGTCCGTACGGATGTGCTGTGGTCAGCATCGCTGATCTCCTCACTGCTGACTCAAAAGATGACCACCTCCTCAAAGTCTACGCCTGCAACACAGAGAGCGACTGGAACCAAATCCACGAgaacatcattaaaaaagtCAACTCCCGATATAACCTCTCAGGGTCCAACACAGGCCTTGCAGTGGCTCTCCAGTTACTCCATGGAGACATTGAGCAGTTGCGGAGGGAGTACATGGCCATTTTCACACGAGGAGTGTCCATCACCAGGAAACTGGGCTTCTCTGATGTCATCATGCCAGGTGAGCTGGGCTACAGACTTGAACACCTCTACATCACCCTTGAGAAAGGAGAGTTTGATAAAGGGGGGAAGACAGTAGCTAGAAACGTGGAGGTCACAGTTTACGCGTTGGATATGGACGGACAGATTCTCAGGGGTCATGTAACCGCGGGGTCAGGCGAGCCAGGTGCAGATGAGTATCACACGTTTGTGTTGTACCACAACAACAGCCCGCGCTGGGCCGAGCAGATCAAGCTGCCCATCCCGGTGGACATGTTCCGCGGCTCACACGTCCGCTTTGAGTTCCGGCACTGCTCCACGAAAGACAAAGGAGAGAAGAAGCTGTTCGGCTTCTCCTTCGTTCCTCTGATGCAGGAAGATGGGCGAACCCTGCCTGATGGCACCCATGAGCTTATTGTCCACAAGtgtgaGGAGAATGCTAGTCTTCAGGACTGTGCTCGCTACCTCAAACTGCCCTTCTCCAAAGCCAACCTACCAGGCAACAATCAAGCTGTGAAAGCCACCAAGGAATCCTTCTGGATCACCTCCTTCCTCTGCTCCACCAAACTCACTCAAAACGGTGATATGCTGGACCTGCTCAAGTGGAGAGCTCACCCAGAGAGGATCAGCGACAGCTTGAGCAAGCTGAAGGAGATCGATGGCTCTGAGATAGTCAAGTTCTTACAGGACACACTGGACACGCTGTTTGGTATACTAGACGAGAGTGCTCAGAGACATGGCCTCAAAGTGTTTGATTGTCTTGTGCACATCATAAATTTGCTTCAGGACAGCAAATTCGAGCACTTTAAACCAGTCATGGACACCTATATAGAGAGTCACTTTGCAGGAGCCTTGTCTTACAGGGATCTGATAAAAGTGCTGAAATGGTATGTGGACCGCATCATTGAAGCAGAACATCAGGAACACATCCAGCAGGTGCTCAAGGCAACAGAGTACATCTTTAAGTACATCGTCCAGTCGCGGAGGCTATTTGCTCTGGCCACAGGCAACCAGAATGAGGAGGAGTTCCGCTGCTGCATGCATGAGCTCTTCATGTCTATCCGCTTCTTCCTGTCGCGGAAGAGCCAGGGAACCAGCCCTGTCACACATACACAGGCGGTGTTTCTGAGGACGTTTCCTGCGGTCTATGGGGAGCTGCTGAAGCTGTTCACGGTGAGAGAGGTGGCCACGTTTGTGCGTGAGACCCTGGGAAGCCTGCCTGCCACCACTCAGGCTGACTGCCCCCTGGAGGCCGTGAAACTGCAGTGCATTGCCAAGACTGTGGAGAGCCAACTGTACACAAACcctgagtCTAGGTGCATCCTGCTACCCGTGGTTTTGCGCTTGTTACAGTCTCACATGCAGGAGCAGAAGGACCTGGTCATGTGTGGCCGCATCCTCACCAGCATGCTCTCGCTCATCAGGAGAGAAGACACGGAGGCTGCCGTGTCCGAGGAGGTGGACCTGATAGTGGACAGCTTGCTGGGCGTGTTATTGAGGACCATATTGGAAATCTCCAACAGACCCCAGTCCACCGGATCAGCAATGCGTATGCAGTTCCAAGACGTtacggGGGAGTTTGTGGCATGTCTGTTGGCTCTGCTGAAGCAGATGAAGGACAAACATCAGCAGCTCCTGCAGAGCTTCACCAGCAAAGATGAACTGAGGGATTTTCTGCTGCAGCTCTTCACCGTGTTCCGGATCCTGATCCGGCCGGAGATGTTTCCTAAAGACTGGACGGTCATGCGGCTCGTCACCAACAATGTCATCATCACCACTGTGCTGTACCTGTCAGACGCTCTGAGGAAGAACTTTCTCAATGACAAGTTTGATTATAAGGTGTGGGATTCCTACTTCTATCTCTCTGTCATCTTCATCAACCAGTCCTGCCTTCAGCTAGAGACTTTTTCCCCATCCAAGCGAAAGAAGATTCTAGAAAAgtatggAGACATGAGGGTGATGATGGGCTGTGAAATCTTCAGTATGTGGCAGAATTTAGGAGAGCACAAGCTGAACTTCATCCCTGCGATGATCGGCCCGTTTCTGGAGGTGACGCTGGTCCCTCAGCCAGATCTGAGGAATGTGATGATTCCCATCTTCCACGACATGATGGACTGGGAGCAGCGTCGGAGTGGCAACTTTAAACAGGTGGAGGCGAAACTCATAGACAAGCTGGACAGTCTGATGTCGGAGGGGAAAGGAGACGAGACGTACAGAGAGCTCTTTAACAGCATtcTTCTAAagaagattgagagagagacatggagagaaaGTGGAATCTCACTGATTGCCACAGTAACACGTCTGATGGAGAGGCTGCTCGACTACAGAGACTGTATGAAGCTTGGGGAGGTGGATGGGAAGAAGATCGGCTGCACTGTCAGTCTACTGAACTTCTACAAAACTGAGCTGAATAAGGAGGAGATGTACATCCGCTACATCCACAAGCTGTACGATCTGCATATGAAGGCTCAGAACTTCACAGagGCCTCCTACACCCTGCTGCTGTATGATGAGCTGTTGGAGTGGTCAGAAAGGCCTCTGAGAGAGTTCCTGAATTACCCCATGCAGAGCGAGTGGCAGAGGAAGGAATACCTGCACCTGACCATCATCCAGAACTTCGACCGTGGAAAGTGCTGGGAGAACGGCATCCTCCTGTGCAGAGAGCTGGCGGATCAGTATGAATCATATTATGATTACAGGAACTTGAGCAAGATGAGGATGATGGAGGCCTCCCTGTATGATAAAATAATGGACCAGCAGAGACTGGAGCCGGAGTTCTTCAGGGTGGGCTTCTATGGGAAGAAGTTTCCTTTCTTTTTGAGGAATAAGGAGTTTGTGTGTCGTGGTCATGACTACGAGCGCTTGGAGGCCTTCCAGCAGCGCATGCTCAGTGAATTCCCTCATGCCATTGCCATGCAACACGCCAACCAGCCAGACCAGACCATCTACCAGGCAGAGGCCCAGTACTTGCAGATTTACGCGGTGACTCCAATCCCGGACAGCCAGGACGTCCTGCAGAGAGACGGCGTTCCCGACAACATCAAGAGCTTCTATAAAGTCAACAACATCTGGAGGTTCAGATATGACCGACCTTTCCATAAGGGCACCAAGGACAAGGAGAATGAGTTTAAGAGTCTGTGGGTGGAGAGGACCACGCTGACCCTGGTGCAGAGTCTTCCGGGCATCTCCCGCTGGTTCGAGGTGGAGAAGCGTGAGCTGGTGGAGGTGAGTCCATTGGAGAATGCCATTGAGGTGATCGAGAACAAGAACCTGCAGCTGCGTACGCTGATCACGCAGTGCCAGACGCGGCAGATGCAGAACATAAACCCACTCACTATGTGCCTGAACGGTGTCATCGATGCTGCTGTGAACGGAGGCCTTGCTCGATATCAGGAGGCATTCTTTGTGAAAGACTACATAATGAATCACCCAGAGGACGGAGATAAGATCGGACGCCTGAGAGAGCTGATGTTTGAACAGGCGCAAATACTGGAGTTCGGTCTGGCCGTCCACGAGAAGTTCGTACCTCAGGACATGCGGCCTCTGCACAAAAAACTGGTGGATCAGTTCCATCTGATGAAGTCCAGCCTGGGCATTCAGGAGTTCCCAGCCTATGTGAGGGCCAGCCCCATCCACTTCCCCAACGGAAGCCCACGCACCGGCCGCAACTCAATGCCCAACATCCTGAGCCCAGAGGGAGGTCGAGTGGTGCCCCGCcgcagtcCACTCAGCTATCCTGCGGTGAACCGCTACTCCTCCTCCTCGCTGTCATCGCAGGCCTCCAATGAAGTGAGCAACATTACGGGCCAATCAGAAAGCTCAGATGAAGTCTTCAACATGCAGCCTAGTCCATCTACCTCGAGCCTCAGCTCCAATCACTCAGCCTCGCCCAACGTCACCAGCTCAGCTCCGTCCAGTGCCAGAGGTTCACCGCAGTTGTCCGAGAAACACAAACATGGCAGAGAGAACTCCTGCCTCTCCCCCAGAGAGAGACCCTGCAGTGCGATTTTTCCTAACCCGCTTGACCCCACACAGAGAACGATTCCACATCCTGCAGGAGACTCCTCTCTGCCTCGCAGTGACCCCAACATCTCCAATCCAGACAAAGTAGTCAGGCTTGCCCCGAGCAGCTGGAGTCTTGACATCCCGCTCTCTGACTCTGTCGGAAAGCAGGTGTGCCCCCCTGTCCCTCCTAGGCCACCGTACTcagGCTCTCCCGCTAAGAACATAAGATCACAGTCTCCGGGGCCGGCGTCACGCTCTCCACAAAAGACGTGTGCCCCTCCATTCACCCCCTCACCCACGGAGTGCCAGTCTGCGGGGCTCGTTGCCAACTCCCCGGTCCTGTCGGGCAGCTACAGCAGCGGCATCTCCTCCCTCAGCCGCTGCAGTGTCTCCGAGGCATCCGGCACTGAGGCCCCGGCCTCCGACCACGCCCTCCCCACCTCGGCCTCCAGCGGCTCGGACGAGCTCTTCCGCAGAGAGAACAAAACCCCGCCCCCTTACAGCGTATACGAGCGCAACAACCCTCGACGGCCCGTCCCCCTCCCCCACAGCCTGTCCATCCCTCCTCCCAGCACCGATGCCCCGCCCATACCTCCAAAACCGCACCAGCTCCGCAGCGGCAAGCCGGACGTGGACCCGCGGCGCCTTGAACAGGTGCCGAGACCGAGGCCACTTCCCAGAAAAGTCTCTCAGCTCTAGCCGGACTGCTGGGATCGAAACCGCACCCCTATACCACTTGCACTTTCGCTCCCTCTCTCGCCGGGTCACTAGCCCAACCGTCAGCCAAACGTCAGACTGTGGGGTAGTAGAGGAGGGTCTTGCAGGGGCACGACTGACGTCCTGCAACGtcctgcacttttttttttctttctttttttttatttttaaggtctTAGGACATAAGAACACAAGCTTCACACGTCAGAAAACAACCACCGGGGCATTGTCTTAGTATTTGGTAGACGTATTATTTCCATGAagtgtaaatattaatatgacaaTTGAAGTTTTATGCCTTACGTATTGAAAACAGAATCTTTTATTGATGGGTAATGCACGTTTTTAAGTACGCTGTACTTTTTTCTAAAATGCCGCAAAAGGTGCTAGCAGCCTGCATTCTATGGCTGCTTGGTTCTTTGCTCTAATCCTGTACACACCTGGATGTTATACAACACGCTATTTCACAGACACAATCATGAAGGTGCTGCTCTGAGGTGGCCAGTTTACCACATTTCAATTTTTATCCAGTTTTATTCATCTTGCATCAGTCCATCACAAAACCAGATGCCATCATGCTCCTCTAGGCTTCCTTCTGAAGTTCATCTGAAGATACTAAAGAGGCAATTTGAGAGAAAAATGATTCCCAACTGACATTCGTCTTTTGAATCTACTAACACCCAGCAGTAATGGTCATGATCATGGTCCCACCCACAGGGAAAAGCTGGTAAAGCTGGATGCTGGCTTGTTCTGTACGGATGTACTTGGAGCTGTTTGTAGTTTACATGCTTTTGGCAGAAAATGCTGATTATGAAAGTGGCCTGGAAAACCTTTCAGAACTGAATCTGTTGGTTCTTCTGCCAAGTTTTGTGCCAAGGTGACGTACAGACTCGAGCCAGGAGAACATGACGGCAGTCACACTGTTTGCCAGATGCTGTTTGTACCCTGCCTTTTGGGGATGGCTTTCCGAAAGGCAATGGAGATGAAGCACAAATGAAGATGTTAGTAGCATCACTGCCTTTGACAAGGATAGTACCCAGGAGTTACACCACATGATGGACACAccacattatataatatatactagaAGGAAGCTGCAGAAGGTTCAGCATACAGTGTCTATGATAACTATGTGTTAACCATTCTGAGACTGCTGGAGCTGTTACAGGCATAAGGCCTGCCATTCCCATCCAGAATCTTTGTTCTTTCGTTGACCAATCACATCTGCCACAATGTGTGTTGCCATGTGTTACCACATCCCattctcattttttattgtCAGTAACAATGTAGGTAACGGTTCATATGTTGATTTGAAGGGCTCTAAAACAATTTAGCGATTTAGTACAGCGTGCTCCAAAGCCTGGACAGCAGTCGAGGTAGCGCAGGTTCTCTGTAGGACTGTCCTATGAAAACTTCATTATAAGAAGCCTAGttgttttatacagctctgaaaaaaaaattaagagaccacttcagtttctgaatcaggtctgattttgctatttataggtt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K17697 DOCK4; dedicator of cytokinesis protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83634 lncRNA downstream 204940 4795715 ~ 4796010 (-) True G62000
TU83631 lncRNA downstream 230777 4769963 ~ 4770173 (-) True G61997
TU83586 lncRNA downstream 365529 4635153 ~ 4635421 (-) True G61955
TU83576 lncRNA downstream 374843 4625497 ~ 4626107 (-) True G61945
TU83574 lncRNA downstream 376740 4623887 ~ 4624210 (-) True G61943
TU83726 lncRNA upstream 93243 5292855 ~ 5293062 (-) True G62083
TU83727 lncRNA upstream 152316 5351928 ~ 5352169 (-) True G62084
TU83730 lncRNA upstream 160933 5360545 ~ 5360794 (-) True G62087
TU83732 lncRNA upstream 199342 5398954 ~ 5399189 (-) True G62089
TU83770 lncRNA upstream 232478 5432090 ~ 5432388 (-) True G62121
XM_022671256.1 mRNA downstream 539425 4447876 ~ 4461525 (-) True LOC107197701
XM_022671254.1 mRNA downstream 574794 4335118 ~ 4426156 (-) False LOC103039416
XM_007252700.3 mRNA downstream 618900 4335118 ~ 4382050 (-) False LOC103039416
XM_022671255.1 mRNA downstream 618903 4335118 ~ 4382047 (-) False LOC103039416
XM_007252702.3 mRNA downstream 618905 4335118 ~ 4382045 (-) False LOC103039416
XM_007252710.3 mRNA upstream 114945 5314557 ~ 5336399 (-) True LOC103042505
XM_022671259.1 mRNA upstream 257097 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 257097 5456709 ~ 5494645 (-) False LOC103037729
XM_022671261.1 mRNA upstream 444897 5644509 ~ 5653023 (-) True cmas
XM_007229732.3 mRNA upstream 458836 5658448 ~ 5663281 (-) True kcnj8
TU83573 other downstream 378373 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 618899 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 618900 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 1342682 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 1452248 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 1174857 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 1433398 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 1471998 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 1522490 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 1535551 6735163 ~ 6737948 (-) True G62484

Expression Profile