RNA id: XM_022671258.1


Basic Information

Item Value
RNA id XM_022671258.1
length 1811
RNA type mRNA
GC content 0.47
exon number 12
gene id ifrd1
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5251133 ~ 5261551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGACCACGTGAGCTGCGGGCGGTATAAAAGCTTTTGGCGGCGGTTCCGCGGCGCAGCCCTAGTTTTATATGGGAAAATGTATCGCTTTCGTTCACAGGCTCTCATCGGAATCGCTTTTAACTCCCTTCTTTTCACTGTGCCACTGGACGACATTCAATTTAAGAGACGCTATAGTAAAAACTGGTCGTGTATTGGCTGattttaggtttatatttgctgtgtTTATACAAGAAGGATGCCCAAGTCTAAGAAGAGGAACGGCAGGGGGGGACAGCATGCAGCTGTGCAGCCTTTCAGTGATGAGGATGCTTCCATTGAGACGCTCAGCCACTGCAGCAGCTTCAGTGATTCAGTCAGCGTGGCAGACGAAGGCGGCGAGGCTGAGGATACTGCGCAGGAGGATTTCCAGTACAAGTTGAACGTTTATATTGACTGCACGGTTGATAAAAGTGCAAAAACCCGGCAAGGAGCACTTGATGGACTAAAGACTGCAATGGCAACCAGAATACTGTATGAGTTCCTGCTAGAGAGAAGAATGACCATCACAGACAGCATTGAGCGCTGTTTGAAAAAAGGAAAAGGAGAGGAGCAGCGTGCGGCAGCCTCCCTGGCTTGCCTCTTGTGCATCCAGTTAGGTTCTGGGATTGAAAGCGAAGAGGTGTTCAAGACCCTGAAACCCATATTCAAGACCATTCTCAATGATGGAACAGCAAACATTCAGGCCAGACAGGCTtgtgcGACAAGTCTGGGCCTCTGCACTCTGGTAGCAGAAGATGATATCTTGGATGTGTACGCCACCATGGAATGCTTTGAGACTCTCTTCACCCGCTCATACGTACGAGAGGATGGCAGCAGGCCTTCACTGAACCCTCAGACCACTCAGCTCCACACTAACGCACTGCTCTCCTGGGCTCTGCTGCTCACCATCTGCAGCGCCAGTCACGTCACAGCCATCATTCACAAACATCTATCCAAGCTTCCAAGGCTACTGGAGAGTGAGGATGTCAACATGCGAATTGCAGCCGGAGAGACCATCGCTCTGCTGTTTGAGCTTGCAAGAGACGTCGACCCAGACTTTAACTCTGAGGACTGGGAGCCACTGTGTGACAAGCTGAATGCCCTGGCCACTGATTGCAACAAACATCGTGCCAAGACTGACAAGAGGAAGCAGCGGTCTGTCTTCAGGGATGTGCTGAAAGCTGTGGAGGATGGGGACTTTCAGACTGAGGCGATCCGCTTTGGCACAGAGCGGATGGTCATTGACAGCTGGGTGAGGAAGAGGACCTACGATGCTTTCAGAGAGTTTGTTGGCTCTGGAATGAACTACCATCTACAGGCAAACGAGTTCATCAGGGACGTGTTTGGACTGGGACCACCAATGCTTATTGATTCAGCTGCTCTAAAAGCTATGAAGAGCTCCCGACTGGAGAGGCATCTGTACAATGCTGCTGCATTCAAGGCTCGCACCAAGGCCAGAAACAAGTTTCGTGACAAGAGGGTGGATGTGGGTGAATTTTAGCATCCAGttttctattaattattcattttcccTGTCGTACTTATTTGGGTCCAATGTGTGTTCCTCTttgtgtgtagaatgtagtaCTGcacattgtttcttttttttttctttcttttttttttaaataacaaattaatatttagtatttatatGGTGTAACATGTAATgtgttgttgttctttttttggtGGTAATATGAATTAAacgtaaaatatgtatatgaaaTGTATGTGCACTTGCTCCCCCCAGTGGTTAGtgttgataaaataaataaatgtggaagctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83673 lncRNA upstream 248229 4999241 ~ 5002904 (+) True G62036
TU83667 lncRNA upstream 263415 4987422 ~ 4987718 (+) True G62030
TU83638 lncRNA upstream 415661 4835272 ~ 4835472 (+) True G62004
TU83633 lncRNA upstream 455122 4795722 ~ 4796011 (+) True G61999
TU83630 lncRNA upstream 480960 4769937 ~ 4770173 (+) True G61996
TU83707 lncRNA downstream 50354 5311905 ~ 5315202 (+) True G62069
TU83729 lncRNA downstream 98994 5360545 ~ 5360785 (+) True G62086
TU83741 lncRNA downstream 170525 5432076 ~ 5432368 (+) True G62098
TU83750 lncRNA downstream 186277 5447828 ~ 5454163 (+) True G62103
TU83802 lncRNA downstream 264227 5525778 ~ 5527065 (+) True G62146
XM_007252707.3 mRNA upstream 549698 4675359 ~ 4701435 (+) True LOC103041372
XM_022671246.1 mRNA upstream 1151744 4083683 ~ 4099389 (+) True mcm10
XM_022671247.1 mRNA upstream 1151744 4083683 ~ 4099389 (+) False mcm10
XM_007232266.3 mRNA upstream 1176570 4048242 ~ 4074563 (+) True LOC103027723
XM_022671166.1 mRNA downstream 160217 5421768 ~ 5423304 (+) True LOC107197570
XM_022671267.1 mRNA downstream 479004 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 491751 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA downstream 496602 5758153 ~ 5765785 (+) False LOC111192936
XM_022671268.1 mRNA downstream 497508 5759059 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 1947135 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 1947135 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 3315634 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 3429357 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 3429798 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 484653 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 720822 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 1589679 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 3271208 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 3271797 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile