RNA id: XM_022671261.1


Basic Information

Item Value
RNA id XM_022671261.1
length 2163
RNA type mRNA
GC content 0.47
exon number 8
gene id cmas
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5644509 ~ 5653023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCTGCTTAGAGTAACGTTTCTAAACTATAATAACAAGAGAAACGCGTTTTTTGATGTATAATTTTCCTAAGGTTACTTTCCTGCTCGTGTTAAAGGGGAGTTAAACTGCAGCCCCAGGCGGATACACGGTAACGGGGCTGGGCGGGCGGCGGGGTGTTTTTTAAGGAGGCTCGTGTATTCGGTGCAGTACGGTAAACGCTGTGGGTGACGCTGCACTGTGGCCGCGCTGTGTGTCCGCTGTAGTAAGTACTCTTGTGGAGATTCCAGAGCGCAGGGCGGAGTCAGCGTTTCGGTTTTAGGGCTGTTGAAGCGGTTTTCGGGTTAAAACCCGTCCCGGACTCTGCGTGTCAGCAGCGGGAGCGCGTGTGAGCGGAATGGCTACTAAACGTAGAGGCGAGCAGAGCGCGGAGGAGCGGGGCTGTAACTCCGTTAAACGGAAGCGAGCGGAGAGCGGCGCTGAGCGGGAGAGACACACGGCCGCGGTGATCCTGGCCCGCGGCGGCAGTAAAGGCATTCCCCTCAAGAACATCAAGATGCTGGCGGGGGTCCCGCTGATCGGCTGGGTGATCAGAGCCGCGCAGGACTCCGGAGTTTTCCACAgTATTTGGGTGTCCACAGACCATGAGGAGATTGAGAGGGTTGCAAAAAAGTGGGGAGCACAAGTACACAGACGGAGTCCAGAAGTGTCCAAAGACACATCAACCTCCCTGGAAACCCTTCAGGAGTTCTCCAGACTTAACCCAGATGTGGATATAATCTGCAACATCCAGGCTACCTCTCCATGCCTTCACCCATGCCACCTGAAGCAGGCCGTGGAGATGATGACAGAGCAAGGATACGACTCTGTCTTCTCTGTTGTTCGCCGACATCACTTCCGTTGGCAAGAGGTGAAAAAAAGAGAAAACACCTTCACCAAACCTCTGAACCTGGACCCATCGAGGAGACCCCGACGCCAAGACTGGGATGGAGAGCTCTGTGAGAATGGATCCTTTTATTTCGCCACCAAAGAGCTTGTGGGCAATGGACTTTTGCAGggaGGAAGAATGGCTTACTTTGAGATGCTGCCTGAGTACAGTGTTGATATTGATGTTGACATAGACTGGCCTGTAGCGGAACAAAGAGTTCTGAGGTTTGGTTACTTTGGCAAAGATCAGCCGGAGCTGGTGCGGCTGCTTCTGTGCAATGTGTCAGGCTGTCTCACTGATGGACGGCTCCATATGTCTGTGGGTGGACTGGAGATGGTGTCCATTCACAACAGGGATTTGGCTGGTATCCGCATGCTTAAAAATGAAGGAATGGAGGTGATCCTTATCTCCTCCAGTGACAACCCAATACCAGTGGCCTTGGCAGATAAATTGTCCCAGCAAACAAAATGTGAACTGAGACATTTTAAAGAGCAAAGGCAAGTGGAGGTGGAGAGACTGATAGTGGAGAAGAATCTGGGGTGGAAAGAGGTGGCTTATCTAGgAAATGATGTGCCAGATGTGGACTGCTTGAACCTGGCCGGTATAAGTGCTGTGCCCATGGACTCCCCTATGGTGGtgctaaatgctgctaattaCACATGCCAGTCACGGGCAGGCCACGGAGCGCTCCGGGAGTTCATTGAGCACATTTTGCAACTGAAAAAGAGTGCCCAGTGCCGGTCTGAAGTACAGTCACCAATGTGAAGCTTACATGGAACTAAAAGTTACAGAAGCGTTTTATTGCAATTATGCAAATTTTAACTTTGTTATAAACATTAATGAAAAGTGTATTAGGTACTAAAATTGAaggaattaagaaattaaggtcaaATAGGTTCTGAATAATCCTCTGTACATTGTTTAGAGATTCTGTTttaggtaataataataataggtcattaatgattttttttaatgacgtTTATGATTTTACACAAATGCTGACAGATCAATCctacaaattattttatttcagagtttttgACTCGTTTACTTTTCACAAGTATCACAATCAGTCTTCTATATTAACACTAATGATTTAGgtcaaacagcagttttatgTTTATGATATAGGCTACACTTTTTAGGTCAAAGAAGGACTCTTGACTGTTACTGTTCAGTGTTGAGTTGAAGATACTGAATCCTGAGTTCAGTGTtacattgttaatttattttgaatatatgGACAAatctac

Function

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function

KEGG:

id description
K21749 CMAS; N-acylneuraminate/3-deoxy-D-glycero-D-galacto-nononate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83808 lncRNA downstream 114313 5528696 ~ 5530196 (-) True G62150
TU83804 lncRNA downstream 117649 5525793 ~ 5526860 (-) True G62147
TU83780 lncRNA downstream 192252 5445563 ~ 5452257 (-) True G62127
TU83775 lncRNA downstream 194232 5443582 ~ 5450277 (-) True G62125
TU83770 lncRNA downstream 212121 5432090 ~ 5432388 (-) True G62121
TU83915 lncRNA upstream 78005 5731028 ~ 5732187 (-) True G62210
TU83922 lncRNA upstream 106440 5759463 ~ 5761833 (-) True G62217
TU83948 lncRNA upstream 275469 5928492 ~ 5967717 (-) True G62237
TU83950 lncRNA upstream 283647 5936670 ~ 5967717 (-) False G62237
TU83949 lncRNA upstream 293911 5946934 ~ 5967717 (-) False G62237
XM_022671259.1 mRNA downstream 149858 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA downstream 149864 5456709 ~ 5494645 (-) False LOC103037729
XM_007252710.3 mRNA downstream 308110 5314557 ~ 5336399 (-) True LOC103042505
XM_022671257.1 mRNA downstream 444897 5000950 ~ 5199612 (-) True LOC103023194
XM_022671256.1 mRNA downstream 1182984 4447876 ~ 4461525 (-) True LOC107197701
XM_007229732.3 mRNA upstream 5425 5658448 ~ 5663281 (-) True kcnj8
XM_007229731.3 mRNA upstream 11878 5664901 ~ 5726282 (-) False abcc9
XM_007229727.3 mRNA upstream 11878 5664901 ~ 5726280 (-) True abcc9
XM_007229728.3 mRNA upstream 14032 5667055 ~ 5726283 (-) False abcc9
XM_022671264.1 mRNA upstream 14032 5667055 ~ 5726281 (-) False abcc9
TU83573 other downstream 1021932 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 1262458 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 1262459 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 1986241 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 2095807 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 721446 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 979987 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 1018587 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 1069079 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 1082140 6735163 ~ 6737948 (-) True G62484

Expression Profile