RNA id: XM_022671271.1


Basic Information

Item Value
RNA id XM_022671271.1
length 3344
RNA type mRNA
GC content 0.49
exon number 18
gene id nell2
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6216811 ~ 6334340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGGAGGAGTGTGCGAGCCTCAGCAGGCGTTTCCGAGCGGATGATGCAGAAGCTCAGAGGAAGGGTGGAATTCACCCTCCTGCTGACCCTCAAACAGGACAAATTCAACTCCGGGGTGATGCTGTCCATACATCATGGAGAGCAGAGGTATTTGGAGCTGGAAAGCAGCGGGCAGCGCAGTGAGGTGCGGCTGCACTACTGGACGGCAGAGCGGCAGATCCACACCGAGGTGTTTCCCTACAGTCTGGCAGATGGCCGCTGGCACAGAGTGGCCCTGTCACTGAGTGCCACACAGCTGGTGCTGTACGTGGACTGCAGCAGAATCTATGAGAGGGTTGTGGGAACGCCGTCTATGGAGGTTCCTGCAGGGTCAACTGTCTGGCTAGGACAGAGAAATAATGCACACGGTTTCTACAAGGGTGTGATGCAGGATGTTCAGTTGCTTCTCATGCCTCAGGGATACATTTCTCAATGTCCAGACCTCAACCGCACTTGTCCCACCTGCAATGATTTCCACGGTCTGGTGCAGAAAATCATGGAGCTTCAGGACATTTTGGCCAAAACATCTGGAAAGCTTGCACGGGCTGAGGAGAGGATGAGGGCTTTAGATGGCTGCTACTGTGAGAGAACCTGCTCTATGAATGGAGAGCTCTATAGAGATGAGGAAGTGTGGATAGACGGCTGCAGGAACTGCACATGTTCGAACGGCACTGTTGAATGTGAGAGCATCTTCTGTCCTGTACCTCAGTGTCCTCCAGACACTGCAGCAGCCTACATTCCTGCAGCCTGCTGTAAAGAATGCCAGCctgtgTGTCTTTTCAGGGGGCGGGTGTATGTGGAGGGTGATCGTAGGAGTGTGCGTGACTCTACAGGGAACTGTCTGCTCTTTGAGTGCAGGGATCGTAGCATGCGAAGAGCTGAGAGCACACCATGTCCAGAGCTGACCTGCCCCGAGTCAGAGCAGATAACCCTCACAGACCGCTGCTGCAAAGTGTGTCGAGGACATGATTTCTGCGCAGAGggctacagcagcagctgtgtggaGAACTCCGAGTGTGTGAATCTGGAGGCAGGAGCCTGCTGCAACTGTAGGGACGGCTACCAAGCGCTGCGGGATGACAGCGCTTACTGTCAAGACGTTGATGAGTGTGCGGAGGGGAAGCACTACTGCAGGgagaacactgtgtgtgtgaacacacCGGGATCCTTCATGTGTGTCTGCCAAACCGGCTACATCCGGATTGATGACTACTCTTGCACTGAGCATGATGAGTGTGGAAGTGGGCTACACAGCTGTGATGAGAATGCGCTCTGCTTCAATACAGTGGGAGGACACAGCTGCACCTGCAAGCCAGGATACATGGGTAATGGCACGGTCTGCAGAGCACATTGTGATGGGCTGTGTCATAATGGAGGCACCTGTGTAGCTCCAGACACGTGCATCTGCCAGCAGGGCTTCACCGGGAGGAGATGTGAAACAGACATTGACGAGTGCTCAGATGGCTTTGTGGAGTGTGACAGTCGAGCCACCTGTGTGAACCTGCCTGGCTGGTATCATTGCGAATGCCGCGATGGCTACCACGACAACGGGATGTTTTCAGCCAATGGGGAGTCATGTGAAGATATTGACGAGTGTGAGACGGGGAGACACAGCTGCGCTAATGACACACTGTGTTTTAATATGGACGGAGGATACGACTGCCGCTGCCCTCATGGGAAGAACTGCTCAGGAGACTGCGTTCACGATGGGAAAGTCAAACACAACAGGCAGATCTGGGTGCTGGATGACGACAGGTGCTCTGTCTGCTCCTGCCAGTCTGGTCTGGTGATGTGTAGGCGGATGGTGTGTGACTGCGAGAACCCGACGGTGGACGTGTCTTGCTGTCCAGAGTGTGACCCTCGTCTCACCTCTCAGTGTTTGCAGCAGAACGGTCTTCTGACGTACAACAACGGAGACACCTGGGTGGAGAACTGCCAGCAGTGTCAGTGCATGCGTGGGGAGGTGGACTGCTGGCCGGTGCCGTGCACTCCTGTGCTGAATTGTGAGTTCTTGGTGGTCCCTGAAGGCGAGTGCTGCCCCCGCTGCATTTCTGACCCCTGCCAGGCCGACACGGTGCGAAACGACATCACCAAAACCTGCGTGGATGAGTACGGTGTCACACGCTTTAGCGGCTCGGCCTGGACCAAACACAGCACTGAATGCTCTCTCTGCCAGTGCAAGaACGGCCACGTCTGTTGCTCTGTGGATCCTCTGTGCCTTTAGTGCCATTCAAAAGGCAACTCTATTGCTTTACTGCCCttgtttctttctgtcttttttttcttcctctctctctctctctctctctcctcttatcGTGCTGTACAGTCTCATTTCACatcagaaaatgtgtttttctttttatttactggGTGTGCAGTACAGGAACACACACAATGCAGCTGTCGCTCAGCAGTGGGTCACATGCATCAGACTTTTTCACTTCTCGTTGTGAACAGACTGGCCTGAGAGCAGCTTTAGCTTTTGATACTCTTATCAGATTTAATCATTTGGACTAAAGAAAGATGTTTGATGCAGATGAATCTCAGAAAGAACAGCATAGAGGAAAATCTAATTAACATGCTTAGTCATTTGCTCCAGATGAACTCAGTCAGCCCTGTTATATTTGGTTATATCTTATCTTAATATTCAGTTTGAAACATAACGTTAATAAGAAACACTGGACTTGGACTGTGACCAATCCCATCTCTGTAAATACATTCcataattacaaaatatttgCACTGGTGTAACTTAAGGAACAGCTGTGATGATGGTGTTCATTGCTTTGGCTGGTTGATTGCATCTGGAGTACACTagatatgaacaaaagtattgggggGGGGTTCTATTCCACTCTAGCCCACTTCAGACATCCGGCATTAGGCATGGTCCCATCCGATTTAGGGGTTccactttaaatatataaggctcctttataaagggtgtaTAGATATAGTTTATAACGGAGTTTATtgatgttattaattaggttgtaaatgctttataaaccattaataagcagttacaacacatacatagCAAGGAGAAcagtgacctgttgtttgccaaatagtgattccacattcatttatactgtcaaacctTGCTTTGTCTGCTCCATCAGTCAGCAGTTAGCAGTCATAAACATGTCTGTTAATAACATCTGTTATTACCGTTAACTACCCAGATTAATAATTTATCCAATAATCATAACTTGATGTATGTTAgcataaaataacagtaataaactgAATTGATTTTCCATATTATTTAATTAGGTATGTTAATGCTggctgatg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24342 NELL; protein kinase C-binding protein NELL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84039 lncRNA upstream 30681 6182851 ~ 6186130 (+) False G62311
TU84038 lncRNA upstream 32303 6182851 ~ 6184508 (+) True G62311
TU84035 lncRNA upstream 39306 6177224 ~ 6177505 (+) True G62309
TU84011 lncRNA upstream 44643 6171213 ~ 6172168 (+) True G62287
TU84006 lncRNA upstream 142185 6074289 ~ 6074626 (+) True G62284
TU84100 lncRNA downstream 29997 6364337 ~ 6364626 (+) True G62367
TU84119 lncRNA downstream 61946 6396286 ~ 6396553 (+) True G62386
TU84139 lncRNA downstream 96251 6430591 ~ 6530879 (+) False G62400
TU84143 lncRNA downstream 140092 6474432 ~ 6531823 (+) True G62400
TU84138 lncRNA downstream 194169 6528509 ~ 6531823 (+) False G62400
XM_022671167.1 mRNA upstream 201697 6012846 ~ 6015114 (+) True LOC111192904
XM_022671149.1 mRNA upstream 223163 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA upstream 223163 5982236 ~ 5993648 (+) False c7h12orf75
XM_007229723.3 mRNA upstream 249076 5782091 ~ 5967735 (+) True plxnb2
XM_022671268.1 mRNA upstream 451026 5759059 ~ 5765785 (+) False LOC111192936
XM_022671272.1 mRNA downstream 75577 6409917 ~ 6426277 (+) True LOC103023466
XM_007245033.3 mRNA downstream 93666 6428006 ~ 6441574 (+) True pus7l
XM_007245029.2 mRNA downstream 267043 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA downstream 284005 6618345 ~ 6632805 (+) False LOC103021937
XM_022671276.1 mRNA downstream 361250 6695590 ~ 6703894 (+) True zcrb1
TU83965 other upstream 222817 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 462527 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2912813 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2912813 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4281312 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 516890 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2198419 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2199008 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3099097 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3312239 9646579 ~ 9650087 (+) True G63051

Expression Profile