RNA id: XM_022671272.1


Basic Information

Item Value
RNA id XM_022671272.1
length 2539
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC103023466
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6409917 ~ 6426277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACGCCGCAGGGCGGGGCCTGGGCGCTGCGCTCCGTTTCCgtgtttctgcagctcctccggTCGACGAGAGCGAAGAGCCGCGATGTCTCACCAAACCGGCATCCAAGcCACGGCTGAAGTGAAAGACATATTTGCCAAAGCACGGAATGGAGAGTATCGTCTGATCAAAGTCGTGATTGAAAATGAACAGCTTGTGCTGGGAGGAACCAAACCAGCAGCCAAGAAGTGGGACCAGGAATGGGACAGTTACGTTCTCCCTCTGCTGCAGGATGACTTGCCCTCCTACCTCCTCTACAGGCTAGACACCACCAATAACCAGGGCTATGAGTGGATCTTCCTGGCATGGTCACCAGACCACTCCCCTGTCCGGCAAAAGATGCTGTATGCTGCTACCAGGGCAACACTAAAGAAAGAATTTGGTGGTGGGCACATAAAAGAGGAGATCTTTGGCACGGCTAAGGATGATGTTTCTCTCAATGGATATAAAAGGTACTTGACCTCCCAGGCTGCTCCACTCCCACTGACGGCTGCTGAGGAGGAACTGAGGCAAATCAAACTCAGTGAGgTGCAGACAGACATCCACATAGACACTAAGCAGCAGACTCTGCAGGGTGTAGCTTTTCCAATGCAGAGAGATGCTATTCAGGCCCTGGAGCAGttcagagagaagagagtaaaCTATGTTCAACTtGAAATAGATTTTCCGAATGAGTCCATCAAGTTGTCCAGCACAGCTCCCACAGAGTTGAAGGACCTGCAAAGAATCCCTAAAGATGCTGCACGCTACCACTTCTTCCTctacaaacacacccatgaagGAGACTACTTGGAGTCCACAGtgtttatcTACTCGATGCCTGGTTATAAGTGCAGCATTCGGGAGAGGATGTTGTACTCCAGCTGCAAAAATCCCCTCATAGACACAGTGGAAAAAAACCTACGCATTGAAGTTGCCAAAAAgctggaGATTGATAATGGCGATGAACTCACCAGTGATTACATGTATGAAGAGGTGCACCCCAAGCAGCATGCGCACAAGCAAGCCTTTGCCAAGCCCAAGGGGCCAACCGGGAAGAGAGGTGGACGCAGAATCACACGTCCACCGGGGGATggggatgatgatgattaatGCCTAACTTGTCTCCATTTTTTAGCCTATCAGTGGTACAACACACCTCCAGTGATGAGCCCTTGTTATAACTTACCTCCCAGTTTACCTGCAGCCCACATCCCCATAGCTTTATCTATGCACAAAAAAGAACACTAATCTAGGACCATCTGAAGAGCATTTGGATGCATCTGTGATTAATATGGTGACACTCCTTAACACTACATTACACATTTTAGCTGGAATACGGACAAGCTTCTCAGATGCATACTACAACCCAGCTTTGGAATGAAAGCCAGGACTATTCTGTAGCCCTATGCAATTGTTTGACCCTCAGGAAGGCTGAAAGGTCAGCTGTTTTTTCCCTTCGTTTGTCTGGGTCTTATTGATTAACTTTCTCTGCATTTTAGCAGGATGTCAGCAGTTGATTGCTTTTTACCTAAACAGAGACCTTATGACTCAGAGAGTGAGTTAATCAATAGCACACCGGACATTTGACATGTCTGAGCTTTGTAGCCCTTTTGTTTGGAGTCAGATCATTTTAATGAAGGAGTTGCTCAGTGCAACCAACCCATGAAGAAATTCTACCATTTTTATAATGCATTGAATGTAGGTATTAACTCTTTTGTGATTTGTAATGTGTAGAGGACTTTAATAATAGAGAGGATGCCTTTTCTAAAGGACCCATTTTGTCTGAGAAATCTGAATGATTGATTGATGCTCTCTGCattgaaaaatgtttttcacattCTTCAAGTGAAATATAAGCTTGTAGAAACACTATTTTTCTAAACCTGAACAGCTGGTATGTCCACATCAAGTTTGTTCTGTCACAGTGGCTATCCTGTTTGTCTCGGAGAATGTTTGCTTCCAGGAAATTGCATGGCATTCACTTCCTTTTAACATGCATTAAGTTTACACAGCATCTCTACGGAGAAAACAACACTAAAGGAACAGTACAATAGTTGATCCTCAAAGAACATTTTTGCCCAGTTTTCTGGGCAAACTCTACAGGGGAAGTGTGTGCTTTCATGTACAAAACACAGCTTACCATCTGTAGGCCCCCAAACTAGGACTACAACCATGTAACCATTGTCCTTATATGTCCTTACATAATTGTCATATTTTACCCAACCTTTTTgccaaaaaacatttacaaaatcaGGCAAATAACCATTTAAGAatccagtaaaaaaatataaaaaaaaaacacagaggaaCAACATCAGACTACTCCTTTAAAACCTCTCAGAAGGGAAAAGGACTTCAGTGAAGAGATCCGTCTACTGAACAGGCAAACCACTATAAGCATTTCTCTTGAGTGTTATGAAGTCTTGAATGTCAGCGTCATTGTTCAGTGTAATgtctcaaatgtttttttaacaaatcaaAATGTATGAGATAgggaaattaaaaatatttaaatcaca

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K08870 TWF; twinfilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84119 lncRNA upstream 13364 6396286 ~ 6396553 (+) True G62386
TU84100 lncRNA upstream 45291 6364337 ~ 6364626 (+) True G62367
TU84039 lncRNA upstream 223787 6182851 ~ 6186130 (+) False G62311
TU84038 lncRNA upstream 225409 6182851 ~ 6184508 (+) True G62311
TU84035 lncRNA upstream 232412 6177224 ~ 6177505 (+) True G62309
TU84139 lncRNA downstream 4314 6430591 ~ 6530879 (+) False G62400
TU84143 lncRNA downstream 48155 6474432 ~ 6531823 (+) True G62400
TU84138 lncRNA downstream 102232 6528509 ~ 6531823 (+) False G62400
TU84168 lncRNA downstream 239118 6665395 ~ 6673458 (+) True G62420
TU84184 lncRNA downstream 308204 6734481 ~ 6734828 (+) True G62431
XM_022671271.1 mRNA upstream 75577 6216811 ~ 6334340 (+) True nell2
XM_022671167.1 mRNA upstream 394803 6012846 ~ 6015114 (+) True LOC111192904
XM_022671149.1 mRNA upstream 416269 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA upstream 416269 5982236 ~ 5993648 (+) False c7h12orf75
XM_007229723.3 mRNA upstream 442182 5782091 ~ 5967735 (+) True plxnb2
XM_007245033.3 mRNA downstream 1729 6428006 ~ 6441574 (+) True pus7l
XM_007245029.2 mRNA downstream 175106 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA downstream 192068 6618345 ~ 6632805 (+) False LOC103021937
XM_022671276.1 mRNA downstream 269313 6695590 ~ 6703894 (+) True zcrb1
XM_007245027.3 mRNA downstream 331277 6757554 ~ 6771361 (+) True LOC103021606
TU83965 other upstream 415923 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 655633 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 3105919 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 3105919 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4474418 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 424953 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2106482 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2107071 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3007160 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3220302 9646579 ~ 9650087 (+) True G63051

Expression Profile