RNA id: XM_022671273.1


Basic Information

Item Value
RNA id XM_022671273.1
length 2719
RNA type mRNA
GC content 0.44
exon number 10
gene id pphln1
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6633010 ~ 6695389 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGCTTGTCTCGTGCGCCTTTTCGTTTGTGTTGGATTTGAGCAGGGTCGTTATTagctttagctgtttagctctgCTGTAGTGAGTATAGGTAGTTTATATAGTCGGGTGAAGGAGAGAACCTTGTTTAAACGATGTGAAGTAGTCAGCTGCCGGGTGTGAACTGCAGCTTTACAGTcgctgtttgttattttttagaaGCTGCTTCACACAAAGCGAGTCGCGTTGGAACTGAGGgtctccctctcacacacagacagacagaaagacccCCATACACAGGGCTAACACGACTCTAGATGTGAGGTAGCCAAGACTGTACAGCTGAAGATTGCGTCTTAAGAAAGCAATGGCGTTCAGGAGAGACAGGAATCTCCGTGAGATGTATGAAGAACGATTCCATCCAGAACGACCTGGCCAGTATCAGAGAGCAGCTGGAGGGGAAAGGAGACCGGGTTTTGGACGTCCTGATGATGAATATGGCCGAGGTTTTGACTACGATGGTCCTCGCTTTTACCCAAATGGTGCCCCCAGAAACTACCATGGTGAAGATCAGAGGGGTTTTCATGGTGACAGCCATCACTCTTTTGGCAATGAACCGAGAGGCGGTCCACCTGGTCGGAGGCAGGAGGACTACCCTTATTACAGAGGACCCAGAGAGGAGCCTCACTCAGGACGCCAAGTGGATTTCAGAGGTAATAATCGAGCAGGCCCTCCTCCCAACGCTCGAGCCCAGGGCACTTACCCTGCACCCAGACCTGTCGGCTCTTGGCCCTGAACAAGGAGACGACTCGCTATTACAGGCCATTATGAACCTGGACCGTGGGGAGGAAAGGGAAGGTATGCGCCGTAAACCACCTTTTCCACCAGTGCGGGAGCGTTCCCCTGTCCGTCGGGATGTTCCCCCTTCCCCGCGCTCTGGATccagcatcagcagccgaagCTATTCCCCAGACAGGAGCAAGACCCACCCGTATCAGCCTCTTCAGGGAAAAAACCGGGACAGAGCCCCAGGGCCCTTGGTGAGCGCATCCCGAGATGGATCACCTCACAGCTCTGTGTCAGCCTCCAAGGAGGAGATACCAGTGACTGAGGGTCCGACAGATGAACCTTTGCCTGCTACAGAAGAGGTTTCCACTGTTTCAGACGAATTCCATGAGCGGCGATCTCAAGCCATCGCAGCCAAAGCCCGGGAGATCGAGAAGGTGTATCGTCAGGACTGTGAGACGTTTGGGATGGTGGTCAAGATGCTGGTGGCCAAGGAGCCCAGTCTGGAGAAGCACCTGCAGACGCCTCTGAAGGAGAACCTGAGTGAGATTCGTGAGCGCTGCCTCGAGGACCTGAGACACTTCATCTCAGAACTGGACGAAGTGGTACGACAGCCAGAATCCAGCGCTTGAGTCGGGAGCAGTGCGTCTGAGAACCGAGAACATTAAGGACTGTGATCTGGAGATTTGGGAATCCAcaatttactttattgtaagaTAGAGATGTGTAACGGTTTGGGACGTCATCATCTCTGTTCATCACTAAAGATGAGTTGTTTGTCTTTCATATGAAGATGTTAATGCACTGTGACTGGTGCAAGATACAGTTAGTTCACTGAGAAGAAGAAGATAACGAAGACATTATCAAACCAATAGACTGGATTGGATGCATTTAAAAACTGACAGTaaaattacatgttttgttttcttgatATAAAATCgctgaccctgtttacacctggtcacttgaTGAGccttgagtatcaggattataaTATCTGAATAATACCAAACTCTACTGCATGGTAATGCAAGTGTAAATGCactaatacacatttaaaacagcaacattaaaaaaatatatattaataaccaacatttctcccaGTTCCAACAAAACATCAGTATTAACTGCTGCacagcaatcagatttcagagtAGCAGAGTACAGTGTAAATATGCATGTGGCAAAACTGTGATCAGGATATAATCCAGATACCTGAAGTGAGCAGGTGTAAACAGAGAGAGTGTACTGAAAGGGTCAGGTGTTGTTCTGTTGATGTTTTTGATGATTAGGCATCATCAGTATTGGATGTGTATTACTTAAGAAGATTGTTCAGGCAGCTCTGGCAGGCATTTTCTGAAAGCTATTGAAGCAAAGTACCTGGGGTGCTTCATTCATTTGTGCAGCACCACCATGTCTAAAAAAAGTTATGCGTtaaattaagattattattttttttttctgtgctataaTTGCATTTTCAATGTTTGTTTTCCAGTTTTGGGTATAATaactaatttagttttttttttttttttttttttttttttcttttttgtcagtgcagtccttttttgtatgaaataaagatggTGTATGCAAACATTCATTTTCTATATCCATTATTAGAATGATCCACCCTCAAATAGTaaagaatatttattaaatctttaatacattttttgtcaaaaaaaaaaatgaacagaatgtTTATCTGCAATAAAatgtatacaataaaacaacaaaataagtGCCTTTCCCCCCGTCTATGTAAAGGAGATAAAGCATATTGACACGTATGAGTTCGTATGGTTAGTTTAAACGCAGGGTACCGTGCTGTGTGACGAGGCCGTTATAATATGAAAGAACAGTACAATGTCTTCAAAAAGTTTACAAAACCCTGGTTGGCAAAATGCCAAGATGgaaatagtcttttttttttttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84160 lncRNA downstream 70713 6562072 ~ 6562297 (-) True G62412
TU84147 lncRNA downstream 101187 6430582 ~ 6531823 (-) True G62404
TU84157 lncRNA downstream 188773 6440953 ~ 6444237 (-) True G62409
TU84156 lncRNA downstream 189778 6440953 ~ 6443232 (-) False G62409
TU84113 lncRNA downstream 254596 6377947 ~ 6378414 (-) True G62380
TU84261 lncRNA upstream 274 6695658 ~ 6698614 (-) True G62486
TU84267 lncRNA upstream 16679 6712063 ~ 6712880 (-) True G62492
TU84282 lncRNA upstream 32490 6727874 ~ 6729002 (-) False LOC111192938
XR_002650187.1 lncRNA upstream 41199 6736583 ~ 6738038 (-) True LOC111192939
TU84290 lncRNA upstream 62545 6757929 ~ 6758476 (-) True G62505
XM_007229721.2 mRNA downstream 488802 6139962 ~ 6144208 (-) True LOC103029290
XM_007229722.3 mRNA downstream 513244 6096340 ~ 6119766 (-) True nuak1
XM_022671263.1 mRNA downstream 906731 5667055 ~ 5726279 (-) False abcc9
XM_022671278.1 mRNA upstream 33365 6728749 ~ 6733125 (-) True LOC111192938
XM_022671168.1 mRNA upstream 39773 6735157 ~ 6736574 (-) True LOC111192905
XM_007252711.3 mRNA upstream 155784 6851168 ~ 6855742 (-) False gpr85
XM_022671280.1 mRNA upstream 155784 6851168 ~ 6855508 (-) False gpr85
XM_022671279.1 mRNA upstream 155784 6851168 ~ 6855457 (-) False gpr85
TU84110 other downstream 258030 6374469 ~ 6374980 (-) True G62377
TU83573 other downstream 2010433 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 2250959 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 2250960 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 2974742 3651966 ~ 3658268 (-) False G61676
XR_002650150.1 other upstream 26718 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 39779 6735163 ~ 6737948 (-) True G62484
TU84600 other upstream 1471294 8166678 ~ 8173802 (-) False LOC111192870
TU85152 other upstream 2923277 9618661 ~ 9622788 (-) True G63104
TU85294 other upstream 3619415 10314799 ~ 10411231 (-) False G63217