RNA id: XM_022671286.1


Basic Information

Item Value
RNA id XM_022671286.1
length 5552
RNA type mRNA
GC content 0.47
exon number 19
gene id foxp2
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6953016 ~ 7094083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAAATACTCGGCGGAATACATCTTGATGTAGTGAATCGTaacgccaaaaaaaaaaaaaacaagctgctGCCTCGTATTGCGCCTCGTGCGAGAGCATTGTAACAGGACTCAGTGTACTCGGCgtgctttttttctgtgttgcaTTAGTAATAACAGCAGCGCGCTGACTGAAGACAGGAGGCAACGCGTGTGCATCTCCGAGCGGAGGGATACCTCGGCGTTTTATTTACTCTGCGGCttgttgttcatttttttttaagaaagaaaaaaaagctgcttTTATGATTATTAGCTTGTGCGCTCACGTGCGCGTTTCCCTCACGGCGCCGACAACAGCGTTTCCACGCAGagctttctgtgttttttgttgctgcTACCCACGGAGGAAATAAGCGCGTGTTTTGATCCTTTGCATACCCGGACTGACTCTTCAAAGACGGACATCTTTTGAAAGTTTTTCTCCCCTCAGGGATGAGATCTGGTATGGCAGTTGCACACTGCACAGCCCGAGCACTCTGAAGCCAAGGCAGAAGTGGTATTAAGTCATGATGCAGGAGTCGGCCAGTGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCACCCTAAGCAGCCAATTAGATGCTGGCAGTAGAGATGGAAGATCAAGCGGTGACACGAGCAGCGAAGTAAGCACAGTCGAGCTGCTGCATCTGCAACAACAGCAGGCCCTACAAGCAGCAAGGCAATTACTCTTACAGCAACCAGGCAGTGGCCTGAAGTCTCCAAAGAACAACGACAAACAGCGTCCGCTGCAGGTGCCGGTGTCAGTGGCCATGATGAGTCCGCAGGTCATCACTCCCCAGCAGATGCAGCAGATCCTCCAGCAGCAGGTCCTTTCCCCTCAGCAGCTCCAGGCCCTTCTACAGCAACAGCAGGCAGTCATGCTGCAGCAgCAACATTTGCAGGAGTTCTACAAGAAGCAGCAGGAGCAGCTTCACCTCCAGcttctgcagcagcagcatcccaGCAAACAGGCAAAAGAGcaacagcagcagcatcagcagcagttagcgGCACAGCAGCTGGTGTTTCAGCAGCAGCTCCTGCAGatgcagcagctccagcagcagcagcacctgctGAACATGCAGCGGCAGGGCCTGCTCTCTCTGCCCCCAGGCCCAGGACAGCCCACCCTGCAAGGACAGAGTCTACCACCAGCCGGCCTGAGTCCGGCCGAGCTCCAGCAGCTGTGGAAGGATGTGACCAGCAGCCACACCATGGAGGATAACGGCATGAAGCACAGCGGCCTGGACCTCAGCACCACCAACACTTCCTCCACTacctcctccaccacctccaaaGCTTCTCCACCCATCTCCCACCACCCCATCTCCAACGGCCAGTCCCCAGCCCTGAACAACCGCAGAGAGAGctCGTTACATGAAGAGACCGGAGCATCACATTCACATTCCCTTTATGGTCATGGAGTGTGCAAATGGCCTGGCTGTGAAAGTATCTGTGAGGACTTTGGACAGTTTTTGAAgcaccTTAACAATGAGCATGCTCTAGACGACCGGAGCACGGCACAGTGCCGGGTCCAGATGCAGGTGGTACAGCAGCTAGAGATACAGCTTTCTAAAGAACGTGAGCGTCTTCAGGCAATGATGGCCCACTTGCACATGCGGCCCTCGGAGCCCAAGCCATCTCCCAAACCGTTAAATCTAGTCTCCAGCATCACCATGTCGAAGAACCTGCCGTCAGCTTCTCCCCCAAACCTGCCCCAGACCCCCACCACCCCCACGGCCCCTGTCACACCGCTGAGCCAGATGCCCCAGGTGCCCTCCGTCCTGAGCCCTGCCAGCGTCCCCAGCATGGGCGCAATGCGCAGACGCCACTCCGACAAATACTCAATGCCCTTGTCCTCagAGATAGCCCCAAACTATGAATTTTATAAGAACGCTGATGTCCGACCACCATTTACGTATGCAACGCTCATCAGGCAGGCTATCATGGATTCGAAAGACATGCAGTTAACGCTTAATGAAATCTACAGCTGGTTCACGCGTACCTTCGCCTACTTCAGACGCAATGCCGCCACTTGGAAGAATGCAGTGCGCCACAACCTGAGTCTGCACAAGTGTTTTGTGCGGGTGGAAAATGTGAAGggggcagtgtggacagtggaTGAGATGGAGTACCAGAAACGCAGATCACAGAAGATAACAGGGAGCCCGACGCTGGTGAAGAACCTGCCTTCCAGTCTGGGTTATGGAGCAGCTCTTAATGCAAGCTTGCAGgcAGCGCTGGCGGAGACGTCCCTGCCGTTGCTGGGTAATCCGGGGTTGATGAACAGCAGTGCGTCAGGACTGATGGGGGGCAGCCCGCCCGGTCTGCTGGGAGGTAGCCCACCCAGCCTCTTACAATGCAGCCTCCACGACGAGCTCAACGGCGCGCTCGAACACCTCGACACTAACGGCCACAGCAGCCCTGGATACTCCCCACAGACACATGTATCTGCAATTCACGTCAAGGAGGAGCCGCTAAACATGGACGATGACGACTGTCCGATGTCATTGGTGACAACGGCCAATCACAGCCCGGAGCTGGAGGAGGATCGAGAGCTGGAGGAGGGCAACCTATCAGAGGACCTGGAGTgatcgtgttttttttttttcatctccaCCCACACTGGCTGGGACTCCGCCCTGACTGGCCCGCCCCTCTAACCACTCCACAAACCACAGAAAGGCAGCAGATGGAAGCGAGGAGTATTTATTTCGAATGAATCCAGGAGACTGGCCCAAAGAGACTATTATCTCAGCCCTTTGAGGACCACATAAGAGCAGGCATGAGATGTCTGCTTTTTAAAAAGACTacacaaagtaaagaaaaaaaaaacacacacacacgcacacacacacaacggaCGAGATTTCCTTCAGATGGCATGGCCACCTCATACACCGTGAACACCAAGACTCATGGACCGAAAcggaaaacaaaaacactcGAGTCTTTCCTGTAGAAAGTTGTTGGCCACATAtactgccaaaaaaaagttttaagtttgTGAATATCCAACCCACAGTAGTCGCTGATGTTAGATACAAATTGCTGGTTCAATTCGAGTTGTTGCTCTGTTATTATTTGCACAGGAGTAGTATCAGAAATTAGTGTCACTGCCTGTATGTTGCTAAAATacgtaaaacaaacaaacagtatttcttttctttcttttcttttttttttaaattctttttaacaaaggctttttttatttcccGTCATGTTTTGCACCACCACCAACTgtaaatgccatttaaaaaaaaaaagtcacaccaATAACAGAACGTAACATGGTATCAAGACTGTTGCAgctgtccaaaaaaaagtaGGTCTCCAGTGTCTCTTATCTCTGTTTGTGCTGAAAAAAGTGAAATGTGATACTGAGTTGAAACGTAAATGTTTGTGTAAGCACCactctgaggaaaaaaaaaaaacaaaaggaaaaaagatgAATTTCTGCATATTCTTCTACTAGTCTCTTTACCTCCTTGTTCTAAAGCTTTGTCTACCTGCAAAGAGTCACAGGCAACAGCTATAAACCAAAGCCAACACTATCAATGGCCAATAGCTTAGACAGAAGCCGCCAGACTCTTTGGTCAGTCTTCTGTGACTTTAACTAGTACAAagagaagcttttttttccGCTAACTACCTTCGAATAACCTCTGGGATTGTGTCATTTAGCCCTGTACAAAGATTTTAAAGAAGGCGATTTTGATGTTTAATTTGATTCCAGTCGGAGAGAGCTCACGCTGGCGCTGTGCAGCGCTGGGTCTGGTCCGCCCTGCGCCAGAGGACAGACCAGAGAGCCTAGGTACACAGACAGGCGCGTGGGCTGGGCTGGACTGGCTAGAAGTGGTAGAGAGCAGCTATAAGTGGATCATGACCAAAACAACCATTTGTGTATCAGTGgaagtgcagaaaaaaatagtgttgtgaaaaaaaaaaacgttttttagtTCTATATATAGATGAATAtacaagttctttttttttgtttttgtttttttttttttaccttcataATTTGTGTCTCCCATCTTCTGGTTGTTTTCTTTGCTAGTGAAACGTGTTGTTCAGTGGAACTGTCTGAAATGTCATGTCTTCTCTCTGTATGGTTTTCTTCTCGGAGCCGTGTTGAAGccgaaaacttaaaaaaaaaaaaacataggaaCCAAACTTTAAGATATCTAGTGaagccaaaaaacaaaaacacttcatGATTTCAAGTTGATATGAAATGATTATGGCTACTgtagccatttaaaaaaaagaggattTCAAAGTTGAGAAGAAACTTTTCTAGGTGACATTTGCTTTGTtctgtaaaagtttttttttattataataaaaataataaattaatacacaGTACAGTACTCCATTGATCTGTGCTGTAGATTACCAGCCATACACTGaagtgccaaaagtcatgggatagtagTATGTAACTTGATCAGGAGACAGCTTGATAGTGATCGAGTCTCGATAGCGGGTGCCAGACGAATGGGATGTTCCATTTTTGAATGAAagtttaacattccttgatttACTGTGTCACATCATAgcaggcattaccacccacagtggacagtgcagtgggtggtaatgaacGTGACCAGCAGCTTCTGGCTGAAGTGTCTAAGTAAAAGGCGACTAAGCTAAACTCGTACCCACATTCAGTTCAGTGCACCGTTTTTTAAGTATCGTAAAAGTGAAACAAGTACCctttcctgtcccatgacatttggcatatcATTGTATGTATTTGAGATATTCCAAAGGTTTCAAAGCAGGATTTGATCATAGCTAATGTCACCTAGAAAAGTAGCTGTTGCTTTAAAAAGGTCATTTCTGTTTTCAGTCAAACCAAAGCTACACAAAATTCTGCCTCCTCTCTTATGGGATAGAGATGCTAGCACACAAAGCTGTCGTAAGGCTCACTCAGTccagcaatttatttattttttacaatattttacaagttttatttcattttttgtattttgatttCGATTCGTTTGGTCTGCTGACTTTCCTGGTCCTCGTTCTGGGTTCTAGTTGACTACCAATGCAGCAAAAACGGTCCGAAATCAGTCTCGGACCTGAAGCGTCAAAAAGTTCCTTCACTTTTTCGCATGTATGGATACAGACTGTGCAGTTGTTGCTCTCCAGTGTTGTGCCAATTCGAGGGGTTGGCTGCTAGCTTCTTAGTGtagatacaaacacacacacacaaatggacGCACACATGCAGACATAGcctacgcacacacacacacacacaccctcacacccCAACTCTCCACACTCCACTAAGATTCTTATACCAGTTCAGCTCAAAGACGAAGCTGGATCCAGGAACAAAGCTTATCCCTTATCCTTTGCTGGAGTCAGCAAATTGACTTGAAGACGACGTTCATAATAATTTTATCACACCAAATATATACTATAGGGccgcagaagaagaagaagaatagtaagaaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09409 FOXP2_4; forkhead box protein P2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650188.1 lncRNA upstream 10231 6924178 ~ 6942785 (+) True LOC111192941
TU84174 lncRNA upstream 123007 6798340 ~ 6830009 (+) True G62425
TU84184 lncRNA upstream 218188 6734481 ~ 6734828 (+) True G62431
TU84168 lncRNA upstream 279558 6665395 ~ 6673458 (+) True G62420
TU84143 lncRNA upstream 421193 6474432 ~ 6531823 (+) True G62400
TU84234 lncRNA downstream 8197 7102280 ~ 7102659 (+) True G62471
TU84371 lncRNA downstream 100693 7194776 ~ 7194982 (+) True G62576
TU84374 lncRNA downstream 124400 7218483 ~ 7218703 (+) True G62579
TU84376 lncRNA downstream 140041 7234124 ~ 7234439 (+) True G62581
TU84401 lncRNA downstream 299620 7393703 ~ 7394496 (+) True G62602
XM_007245025.3 mRNA upstream 159149 6782248 ~ 6793867 (+) True LOC103047680
XM_007245027.3 mRNA upstream 181655 6757554 ~ 6771361 (+) True LOC103021606
XM_022671276.1 mRNA upstream 249122 6695590 ~ 6703894 (+) True zcrb1
XM_007245029.2 mRNA upstream 320211 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA upstream 320211 6618345 ~ 6632805 (+) False LOC103021937
XM_007252716.3 mRNA downstream 45768 7139851 ~ 7170640 (+) True mdfic
XM_007252717.3 mRNA downstream 45768 7139851 ~ 7170640 (+) False mdfic
XM_007252723.3 mRNA downstream 455002 7549085 ~ 7553250 (+) True arl1
XM_007252735.3 mRNA downstream 509818 7603901 ~ 7612947 (+) True slc5a8
XM_007252724.3 mRNA downstream 526731 7620814 ~ 7631378 (+) True tmem209
TU84211 other upstream 97254 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 959022 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 1198732 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 3649018 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 3649018 3299089 ~ 3303998 (+) False G61575
TU84764 other downstream 1438676 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 1439265 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 2339354 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 2552496 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 5373967 12468050 ~ 12468902 (+) True G63432

Expression Profile