RNA id: XM_022671319.1


Basic Information

Item Value
RNA id XM_022671319.1
length 5522
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC103035489
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9618666 ~ 9639280 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGGAGTAGAAGAgcgagagtgaaagagagagagaaagaaggagcaaagaaagaaagaaggaaagaaaacaaaagaaaaaccaAGCAGCAACAGAAAGCGGTGGAAAAAGCGCGCGTGCCACCTGTGAAGGAGTAAAGAATGCGCAAGAGACGGACAACAAGAGCAACAACAACACGCGCTCGAAAGCGAGAGTGACGCGcgagacacagagagagtgagacgcGCGCAACAGACCCCTCGGATTTACCGGTTGTTTGCCCCCCTCACGAAAGGGAGCGCACGCAGGGATAAAGGCGAGGCGCTGTGAGGGTTCTCTAGTCCAGGCGCGCCGGTGCGCCTTGCCCTCAAGGGggtggggaggggaggggggggtcaCAAAGATGACCGTGGTGCCCGCGGAGAACCTCGACGAGACCGTGGCACTTGCTGCCCTGTCCCCAGATGCCCATGAGCCTGAGAGAGCGGACCAGGAGTGCTGCGAGCGGGTGGTCATCAACATTTCGGGCTTGCGCTTCGAGACGCAGCTCAAGACCCTGGCGCAGTTCCCTTCCACCTTGCTGGGTGACCCGAGGAAGAGGATGCGCTTCTTCGACCCGCTGAGGAATGAGTACTTCTTCGACCGCAACCGCCCCAGCTTTGATGCCATCCTCTACTACTACCAATCAGGCGGCAGGCTGCGGAGGCCTGTCAATGTGCCAGTGGACGTGTTCATGGAGGAGATCCGCTTCTACGAGTTAGGTGAGGAGGTCATCGACAACTTCAAGGAGGACGAGGGCTTCATCAAGGAAGAGGAAAGGCCGCTGCCTGAGAACGAGTTCCAGCGACAGGTCTGGCTTCTCTTTGAGTACCCGGAAAGTTCCAGCCCAGCTCGGGCCATCGCCATCGTCTCCGTACTGGTCATCCTCATCTCTATTGTCATCTTCTGTTTGGAGACACTGCCCGAGTTCCGGGATGATGGAAGGGCACGTGAGGAAGAGCGGGCAGCCTGGAACGCAACTGGCCGTGCCGACTCGCCTCTGCCACCACCGCCCAACCCCTTCACAGACCCCTTCTTCGTGGTGGAGACATTGTGCATTGTGTGGTTCTCCTTTGAGCTGCTAGTGCGCTTCCTGGCATGCCCTAGTAAGGCGGCCTTCTTCAGAAACATCATGAACACCATCGACATTGTGGCCATCATGCCCTACTTCATCACACTCGGACTGGAGCTGGCTGAACACCAGGGCAATGGCGGGCAGCAGGCCATGTCTCTGGCCATCCTCAGGGTCATCCGACTGGTGCGCGTGTTCCGCATCTTCAAGCTGTCAAGACACTCCAAAGGCCTGCAGATCCTTGGCAAGACCCTACAAGCCAGCATGCGGGAACTGGGCCTGCTCatcttcttcctcttcattgGGGTTATTCTGTTCTCCAGTGCTGTGTACTTTGCAGAGACTGACGACCCGGCATCTGGTTTCAGCAGCATCCCGGATGCCTTCTGGTGGGCTGTGGTCTCTATGACCACTGTGGGTTACGGGGACATGTGCCCAGTGACTATTGGGGGCAAAATTGTGGGCTCTCTTTGCGCCATCGCTGGTGTGTTGACGATTGCACTACCAGTTCCTGTAATTGTGTCCAACTTCAACTACTTCTACCACAGGGAGACAGAGCACGAGGAGCAGTTGCAATACACTCATGTAACATGTggtcagcagcagcaacagcaacagTCATCGTTCGGTGAACTCAGGAAGAGCTCGAGCAGGCCTTCCCTCACCAAGTCTGAGTACGCTGAGTCAGAAGATGCAGACTCGATCAAGTACACAAACTGCAGCCCTCACAAGGCGTACACTGGAAAGCTCACAGACGTGTGACTTTGGGGGGgctaaagaaagcaaaaaaaagagaagagagaaaaaagacaaacaaacaaagaaaaactacAGAGTGTGCACTGGTGGCACAACTGACTCTCCATGAATTTCTTCATCCCTCCTGCCTCTCTTTGCGCTCCAGTTTGAGTCCATTTGGCTGAGCTCTGGTGTCCAAGCGTGTCGCAGCAAAAACATGGAATAAGACGCGGAAGTGGATGATTGTCTTGCTtttggtttatgtttatttgtttttcttgttttctacaAACTTGTCTGCCATATTGGCGACCATCGGTATCAAAGTGCACGAGGAGGTGGGACATTGGGGGTGAGTGGGGGGTTGTGACTGTCGCCAGCCTCAAATAGAGACctatatatccatatatatatatatatagttgaatAAACTTAGAAAACAATACTGTCAAGCAGCCAAGCCCAACCTTGCAGGAATTAGCACTTTACTTGCGTAATCttagtaatatttaattattgttattagccTCGTTTTTTTTCTGGGGTTTTTTCAAAGTTTACATTTGATTTGCCTAAGGGAGATGATAGGACCAATATATCTGACATATATACACAAGTATTTAtaatttcttttcttatttttgtacCTGTGGGCATTGCAACTGCAATTGCAAGGCCACTAGAATAGCCAAGGTGCCCCCTGTTTTTGGTGGTCACTGATTAGTCATGGCTGAGATGGTGAGAGTCTGGAATAATGTCAGGGATGGTGTAAGTCAGTCATGGCATCATAGACTGATTTTGGGAAATGCACAACATTTCACTGTGCCCATCTTCATCTTACCAACATGATACCAtcatgatcatcatcatcatcatcaccatcattatcattattttcaACATAGCTGTCAAACCTGCACTCGTGTGTTTTGGTCAGAATAAGAATCAGAAACAGAAGGCAGAATATCTGCATCAGCTTTGTAACCCCAAATATATAGAGAACTGGTTTATGATTTTCATCGTCaatctaatttaatctaattGCTTCCATTTGAGCACCTTTATTGCCCCAAGGTGAGTCCCACCAGCCTCATTTATTTAGGGTATACTTCATCACTTCAATCACAATCATTCTCCAGCCTCCAGTGTTGACCCATTCTTAATTATCACTCTGTTCCAGCTATGCCAAAATATGACAGAGATATTCTCtaatgttcattttgacacaggGGTTGCTTTGGATGCTTTGGATGTTTTCTTGGACAAAATGCTTAAACTTAGTGATTACAAACGTGCGCCTTAGACCTGCGGGCTGTTGGGTTACGTTTCTGAACCGAGAGCTCCATCTAGTGGGCAAAGATGAGAGGTTTTGGGGGGGGGCAAAAATGTGTTTCTATAGCAACCTACCAGACTGTTCTGGATTTCTTGACATCAGGCAGTTTTGTTGCCttaaattattgttgtttttcgTTCACGTACAAAACAGCAAAGGTGGGTTTGTCGCTTCTAATTGTGCTGCTTCATAATGCCGACTAACGTAATGTAGATACAAAATGAAAGGAGATGAGtagagcatatatatatatctatttggCAGCTAGAGAACCCCTACCAACATTGCATTGTCTGCAATGTCAATGTCTGATGAAAGGAACTGACAAGAACACTGTCGTCTAGTCTTGGCTCCTTTTGGGAAGTAGCGAAACTAGTGAAAACGTCATGCTGACTACTCTGGACTACAATTCAATAGGTCTTTCTCTCAATCTGTTTTCTTCAAGGAGACTGGGAAGGGAGGATGGTGGGGTGGTGGGATTGTATAGGTTGGGTTGGATTGGGGGtgggttgattggttggtttgtaCAGAAagcaaacgaaaaaaaaaaaaatgatggcaCCACTTATGACATGTGATGACACCATTTCCTTGCTTGATCTTGGGGGAAATCATCTACTGCATACAGAGATCTACTCTGCTACtggtttaaaacaacaaaaaagggaTTTGGCAACGTTGGAATTGGTATTTCCAAAGCAGGAGCAGGACAATGGTGAGGAGAACTGGCACTAGACTGTGGCACGAGGAGCTCAGACTGGGAGGGAGTCCTATTGGCTGGACTGGCTGGATTAGGAGGAGCTGCATGCAGCCAATCAGTGGATGTCAATAGGCAAGATGGGAGTACGGAAATATGTGCAATTTTCTTCTGGTTACGGCTCTGCAAAAACTGCTTCAGCAACTGCACCCACTCTCTGCTCTCCAACAGGAGATGGTGGAGGAGGTTTCTGCAATATAAAGCAAGGAGCATGGAGATGATCTTTCCCAGAGGTTTCCAGATCAACACAGTGAAGAAAAAACCAACACGGCAGCCACCTCAACCCCTCCACCGACTCTGACACCAACCTCAACCAGGCCACGGTCTCGCGCTTCAAAACgacactgtaatactgtaataatgtgaATGCAGGCATGCTGGTGTTCAGAAGATCCATAAGCAAGACCAAAAGCCTGCAGAAAAAGCTCTTTCAGAAATGGACAGCACCTCCCCGGATCTTGGTACAGGGGGGCTTTTCGTGCTGAAGTGGAGTCTATGATGGACAATGAGGTCTTTGAGGACGACCTGTGGCTTACAGACATGCTGAACTGAGGTAGAGGAGAATTTACTTGAATCACAGATCATCTACGTATATGCTTTATGAGACACTGAACGTGTTTTCTTGATGTCTTTTAGGAAACAACATGCTGTAATAACGGGAGTgagtgtgggtgggtgggtgtgtctTTGGGTGTGGCTGTCTgcctaggtgtgtgtgtgtgtatgtatgtactgtaagtgtgtgcatgtatgttcTCACAGGTACACATCAAGAACGTATAGTCCCATATGAACATTGCATATCATGTGCTAAACCAAATCATACTGCATGCTTGGAAATTCAGAGCATGcactcagaaaaaaaagtatactattatagtaataaaaaaggcattttcattttctctctttgttaAGCAACTCGCACTTGtcaatatctaaaaaaaattagttgCATCCAGAAGAAGAAGTTTTGGattggtcatatttattattaagctTCACATACAGAAGAGGTAGTGTGTAAAGCATCTGTAATGCTGCAACGTCCTAGATCTCTCAgcatagagttgtagaggttcctaatggcgtCCTGCGATAATCCATCGCATGCAGCTTAAAATTTACACACAGCTCCGGCTAATTTTAAAGGTAGAGATGGAGTGTTGATACTGCAACCAATAGCATTCCATTTACCGTACAATCCGGGGATAGGTCTGGCGATGCTTCTGACCATAGaatagtatctgtgtcttcaagtcAAGCTCTTGAGAAGTTGTCCTATTAGAATATCACTCCAGGATGTGAACCACCATATTGACATTATGTTGGGCTGTCAaaatgcctgtaatgaagaccattATTGGCATTGTGCAAAATTTCCCCcaacaccatgacaccaggggTCCTACCGAATATCTAGCTCAAGGCACAtcgcgatgctctttgctaACTTACACCTCATCAACAGTCAATTTTAACACCTTTTGCCTGCATTGCAAAATGTATTATAGAGCGCAAACCCgaattttaactcaacaataaacagataaaataataaaataacattcctggtgtaacagtgtgaacacacaggtcagaAT

Function

GO: NA

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85061 lncRNA upstream 83835 9534573 ~ 9534831 (+) True G63047
TU85058 lncRNA upstream 117972 9500304 ~ 9500694 (+) True G63044
TU84976 lncRNA upstream 136138 9482262 ~ 9482528 (+) True G63027
TU84967 lncRNA upstream 158978 9433659 ~ 9459688 (+) True G63022
TU84961 lncRNA upstream 185113 9431499 ~ 9433553 (+) False LOC111192948
TU85064 lncRNA downstream 3201 9642481 ~ 9644511 (+) True G63050
TU85086 lncRNA downstream 171592 9810872 ~ 9866501 (+) True G63067
TU85101 lncRNA downstream 242835 9882115 ~ 9884275 (+) True G63081
TU85138 lncRNA downstream 332972 9972252 ~ 9976111 (+) True G63090
TU85139 lncRNA downstream 341238 9980518 ~ 9984728 (+) True G63091
XM_015604952.2 mRNA upstream 195385 9293820 ~ 9423281 (+) True phf21b
XM_007245887.3 mRNA upstream 195385 9293824 ~ 9423281 (+) False phf21b
XM_015604951.2 mRNA upstream 195385 9293824 ~ 9423281 (+) False phf21b
XM_015604953.2 mRNA upstream 195385 9361035 ~ 9423281 (+) False phf21b
XM_015604954.2 mRNA upstream 195385 9361035 ~ 9423281 (+) False phf21b
XM_007237082.3 mRNA downstream 46077 9685357 ~ 9693289 (+) True LOC103035797
XM_007237093.2 mRNA downstream 141191 9780471 ~ 9783136 (+) True LOC103038615
XM_007237086.3 mRNA downstream 249937 9889217 ~ 9898004 (+) True LOC103036813
XM_022671320.1 mRNA downstream 261205 9900485 ~ 9925895 (+) True LOC103038308
XM_007237091.3 mRNA downstream 290228 9929508 ~ 9945834 (+) False usp15
XR_002650190.1 other upstream 178102 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1078543 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1085434 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 2762904 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 3624672 5982373 ~ 5993994 (+) True c7h12orf75
TU85065 other downstream 7299 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 2828770 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 3020168 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3516946 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 5105455 14744735 ~ 14745082 (+) True G64015

Expression Profile