RNA id: XM_022671320.1


Basic Information

Item Value
RNA id XM_022671320.1
length 7664
RNA type mRNA
GC content 0.49
exon number 28
gene id LOC103038308
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9900485 ~ 9925895 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGAAGCCGCTAGCTGGCTAGCAGCGACCttgctaacgctagctaggtAAAGCCACCCAAATACAGGAGAAGCTGAGCTTCGGAAAGACGGGAATAATATTCGCAAAAGCTACAAGCTACACAGGATAGTGGGACAATTCATGATAAtttgttagctagttatattatttaaatacaactagttagctaactaacgttTTGTTTGCGTCGCTAGCTTGCTGACGGAGCTAacgagctagctagctaaggttAACTTCAATACTTTAAAGAAGCAGACTGGACTTAAGTTAAGTAGAAATAACCGAACATGACATCTTTTATAGACAGCTAAACAGTGCTTTTTAAACCAGATAGCATCTCAATCGCTTGTTTGACATAGTACCACGCGATTATTggtttattgttattttctttcGACAACCAATAATGAACGCTATTAGTGTAGCTAAGCTAACACTAGCGTAGTGCCACCCGATGTTGTGTCTAATTTTGCTACCCATCGGTGTGTGCATCATACCTGCTTTGCGCATGCgctgaatgtgtttttcaatttaaaatttatttttgtttgggtGCATTAAACAATCTGCGCTCACTCATGTTAAGAGGTCATTTTTGGCACATTATTCGAGTGTTACAAAAAGGGTAAATGgtgattaatattataaatttaataaataataaataattacatacaaaaaacattaaaaataccaAAAAGGGGTCTATACATTATAATCACATCTATTAAATTTGCTTTACAGTGATTTAAGCTATTCGAATATTCTAgtatataatattgttttttttatgtaggacttttacttttaaagatTAAAAGGTTACACTACGGTAGCACgatttgacagggtagcacaactcgtcACAACACCGGATACCAGAAGATATCCCTGTACCCGATTTTGAGGTGTAAGCGTATTTTAATGGATAGAAGCCTGCAGTGATCGGTTTATTACCGTTACAAGTCTAAAATATGAGAAACATGAATACAGCCTATATATTCGACAGAACGCGTTTTAAAGCGGCGTTGTTTCGCGATAATAATGCTTTTAGCACattacattagctagctagccaccAAAGCGCTGTGTCTGCTCAGTGTTTGTAAATGAACACTGATGACTGACTTCTCCGTCCGGTTGTATGTATGAACGCAGGGGAGTGGTGTAGCGAGTGCCGGGGTGCTGCTGCTCTCCAGCTCGGCCCACAGTCAAACCTGATGATGGACAAACATCCCAAGGACATTTAATCGCATTAAATgacttttctcttcttcttaaGTTGCCAGAAAGGACAGCAGGACTTCATTCAGactgttttgggggtgtttttgGTGCGTTCAGACGTGGCACGCAGTGGAAACGGTTTCATTGTTCGTACCGAAGGCCACAATCATGGCGaagagaaaatgaaatagttccttgtgtgtctgtgagtttgtttatttttcacattttttactcCAGTTGAGGAGCATTCGCACCTACATGAGACCTATACAAACTGGATTTGAGGAGTCTAGTTCATCACCTGTACTTTTAAATGGCTGAGGATCTAAATTGCTGGGTTATAAAGTAAACAGTACCTACGACTTCATCATGTCTATGTACGCGGAGTTCGTCCCACCTCCAGAGTGTCCCGTTTTCGAACCCAGCTGGGAGGATTTTTCAGATCCACTGGGCTATATATCTAAAATACGACCCATTGCAGAGAAATCGGGCATCTGCAAAATCAGACCACCACAGGACTGGCAGCCACCGTTTGCTTGTGATGTGCGCAACTTCCGCTTTACTCCTCGAGTCCAAAGGCTCAATGAACTTGAGGCTCTCACCAGAATCAAGCTTAATTTCTTGGATCAAATCGCGAAGTTCTGGGAGCTCCAGGGTTCTAAACTACGTTTTCCACATGTGGAGAAAAAGATCCTGGACTTGTACCTTCTTAGCAAGcttGTGTCTGCTGAAGGGGGTTTTGAACTAGTCTGTAAGGAGAAGCGCTGGTCAAAGATAGCCAGTCGAATGGGGTTCCCCTCTGGGAAAGGCTCTGGGACCTTGCTTCGCTCGCACTTTCAGAGGATTCTCTACCCATACGAGCTTTTCCAGTCTGGAGCTTCATTCACAGGCGTTCACCGTTTGTACCCGGAGGGAGATGAATCTGAGGATATAGATGAAGGAATAGAGGGTGGAtgtgaagaagaggaggatgaagaagaggagaaaCCGAGAGAGAAGGAAGGCCAGGAACGGGATTGTCTGGGTGACAGGCCGCAGAATAAAGAGCAGCCTGTACCTGAGAGACGATCTCGGCGCCTCAAATCAGAGagagagaacaaagagCCTAAAACCCTGCAGATCTTTGGCAGCAGTCCTAAGGTGGTTGGTCTGGAGATTGTTCCAGCCGATGATGGGTTTATTAAGAAGCAGAGGCATCTCAAGGCTCAAGCGTTTGCCATTAAGATGCGTCCCCGCAAAGAGACTCTGGAAGTCAATTTTATTGACCTGTACATGTGTATGGCTTGTGGGCGGGGAGATGAAGAGGACCGCCTCCTGCTGTGTGACGGTTGTGATGACAGTTACCACACCTTCTGCCTGATCCCTCCCCTTCAAGATGTTCCCAAGGGTGACTGGCGTTGTCCCAAATGTGTGGCAGAGGAATGCAGTAAGCCTCGGGAGGCGTTTGGTTTCGAGCAGGCAGTACGAGAATACACTCTCCAGAGTTTTGGCGAGATGGCGGACCACTTTAAGTCTGACTACTTCAACATGCCAGTTCATATGGTGCCTACGGAGCTGGTGGAGAAGGAGTTTTGGAGGCTGGTGAGCAGTATAGAAGAAGACGTGATAGTGGAGTATGGAGCGGATATCGGCTCCAAAGATGTGGGCAGTGGATTTCCTGTCCGAGATGGGAAAAGAAGACTTGTAGGGGATGAAGAGGAATATGCTAATTCGGGCTGGAACCTGAATAACATGCCAGTGCTGGAGCAGTCTGTTCTCACCCACATCAATGCAGACATCTCTGGTATGAAGGTGCCGTGGCTCTATGTGGGTATGTGCTTTTCATCCTTCTGCTGGCACATTGAGGACCACTGGAGCTACTCAATCAACTACCTGCACTGGGGGGAGCCAAAGACCTGGTATGGAGTCCCAGCAcatgcagcagagcagctggAGGCGGTAATGAAGAAGTTGGCCCCGGAGCTATTCGACTCACAGCCAGACCTGCTTCACCAGCTAGTCACCATCATGAACCCTAACGTTCTTATGGAGCATGGTGTTCCGGTGTATCGGACCAATCAGTGCGCTGGGGAGTTTGTGGTAACCTTTCCGAGAGCCTATCACAGTGGCTTCAACCAGGGATACAACTTTGCTGAAGCTGTCAACTTCTGTACTGCAGATTGGCTTCCAATGGGACGCCAGTGTGTGGCACACTACAGGCGTTTACAGCGGCAATGTGTATTCTCTCATGAGGAGCTGCTGTGCAAGATGGCCGCAGACCCAGAGAGCCTTGATGTGGAGCTTGCTGCTGCTGTGTACAAAGAGCTGGGAGACATGATGGACGAGGAGAGCAGGCTTCGACAGGCTGTCAGTGACATGGGGGTGCTGTCTTTTGAGCAAGAGGTGTTTGAACTTGTCCCAGATGATGAGAGGCAGTGTTACAAATGCAAAACCACTTGTTTCCTGTCTGCGCTGACCTGCCCATGCAGCCCTGATCGCCTGGTGTGTCTTCACCACACAGCTGACCTCTGTGACTGTCCTCTCACCAGCAAGTGTCTCAGGTACAGGTATGATCAAGAGGAATTCCCTGCTATGCTGTATGGGGTAAAGTCACGTGCCCAGTCCTACGAGACCTGGGCCAAGAGAGTTACTGAAGCACTGGCTGCTGATCACAAAAACAAGAAAGATCTGATCGAACTGAAGGTCTTGCTGGAGGACGCGGAGGACAGAAAGTACCCAGAGAACAATTTGTTCCGCAAGCTGAGAGAGATGGTGAAGGAAGCTGAGACCTGTTCCTCTGTGGCCCAGCTGCTGCTCAGCCACAAGCAGAGACACAAGGAGCGCACAGAGAGCAGCCGAATACGAACCAAGCTAACCGTGGAGGAGCTGAAAGCATTTGTGGAGCAGCTGTTCCGCCTGCCCTGCATCATTAACCAGGCACGCCAGGTCAAAGAGCTGCTGGAGAATGTAGAAGACTTCCATGAGCGTTCACAGGTGGCTTTGACAGATGAGACCCCAGATTCGAGTAAGCTGCAGGCTTTAGTGGACCTGGGTTCTGGGCTGGACGTGGAGCTGCCTGAGCTGCCTCGGCTAAAGCAGGAGCTACAGCAGGCACGCTGGCTGGACGAGGTGCGCCTCACCCTGCAGGAACCCCAGCGAGTCACTCTGGAGCTTATGAAGCGTCTGATTGACTCAGGTGTGGGTCTAGCACCGCACCATGCTGTGGAGAAAGCCATGGCAGAGCTGCAGGAAATCCTCACAGTGTCTGAGCGCTGGGAGGACAAAGCCCGTGCCTGCTTGCAGGCCAGACCCAGGCACAGCATGATCACCCTGGAAAACATTGTTATGGAGGCCAAGAACATTCCTGCCTACCTGCCCAATGTGTTGGCCCTCAGAGAAGCACTCCACAAAGCCAAAGAATGGACGTCCAGAGTGGAGGCTATCCAGAATGGCAGTAATTATGCTTACCTGGATCAACTGGAGGCGCTGTTAGCGAGGGGGCGCTCTATCCCAGTGCGTCTGGATGCGCTGCCGCAGGTCGAGTCCCAGGTAGCCTCAGCACGATCTTGGAGAGAGAGGACAGCTCGCACTTTCCTTAAGAAGAACTCAACCTATACTCTTCTCCAGgTTCTAAGCCCCCGTACAGACATTGGCGTATATGGCAACAGTAAAAGCAAGCGCAAGCGAGCGaaggagctgctggagcaggagcgTGGACTAGAGCTCGACAGCCTGAGCGACCTGGATGAAAGCCTTGAAGAGGCACGTGAACCCTCTGCTGTAGTGGCTGCCTTCAAGGCCAAGGAGCAGCAAGAGGTAGAAGCCATCCACTCCCTACGTGCCGCCAACCTGGCCAAGATGGCCATGGCTGACCGTATAGAGGAGGTCAAGTTCTGCCTGTGTCGTAAAACGGCAGTGGGCTTCATGCTTCAGTGCGAACTGTGTAAGGACTGGTTCCACGGTGCCTGTGTGCCCCTACCCAAAACAGGCTCGCAGAAGAAGCTGGTGGCTGGCTGGCAGGGCAGCAATAAGGAGTCAAAGTTTCTGTGTCCGCTATGTCAGCGTTCGCGGCGGCCCCGGCTAGAAACCATCCTCTCGCTGCTGGTGTCGCTGCAGAAGCTGCCTGTGCGGCTCCCTGAAGGTGAAGCGCTCCAGTGTTTGACGGAGCGAGCCATGAGCTGGCAGGACCGAGCACGGCAGGCCTTGGCCACTGATGAGCTCTCGTCTGCCTTGGCCAAGCTATCTGTGCTCAGTCAGCGCATGGTTGAGTTGGCTGCACGTGAGAAGACTGAGAAGATCATCAACGCAGAGTTACAGAAGGCTGCGGCCAACCCAGACCTGCAGggACACATTCAGACATTCCAGCAGGCGGGATTCAGCAGAGCCACCTCTCCACGGCCATCGCTGGACTACGACGATGAGGAAACGGACTCAGACGAGGACATCCGCGAGACTTACGGCTATGATATGAAgGATTCTGGTGAGGTGAAGCCCTACTTGTTCTGTGATGAGGAGATTCCTGTGAAGTCAGAAGAAGTTGTCAGCCACATGTGGCCAGCCACACCGTCATTCTGTGCAGAACATGCCTACTCTTCTGCCTCCAAGTCTTGTCCTCAGAACCAGACCACCCCACGCAAGCAGCCCAGGAAGACGCCCCTGGTGCCCCGCAGTTTGGAGCCACCAGTACTAGAACTGTCTCCAGCTGCGAAGGCCCAGCTGGAGGAGCTTATGATGGAAGGGGATCTGCTGGAGGTCTCTCTGGATGAAACTCAGCACATCTGGAGGATTCTGCAGGCCACCCACCCACCATCAGAGGAACGCTTCCTGCAGGTCATGGAGTCAGAAGACGCTATGCTGGAGAAGCCAATGAAGCTGAAGCTAAAGGATGtggagaagaagaggaaaaggaAGCTGGAAAGAGCTGAACAACAGCTACTACTGGCTACCACAGGAGTGGATGGCCGACCCAAATGCAAAGACACAAAGAGGGTGCTGGAGGTGGgcggtaaacccaagaaaaagaaGCTCAAGCTAAACCCAGACAGGTCGCGTGAGCTCAAGCAGCTGGCCAAACGCCTCGccaaggaagagaaagagaggaagaggaaggagaAAGCTGCAGCCAAGGCAGAGTTTGCGAAGGAAGGACTTGAGCgcaagaaggagaagaaggtcTTGGACATTCCTTCAAAGTATGACTGGTCTGGTGCAGAGGACTCCAATGATGAAAATGCTGTGTGTGCGGCGAAGAACTGCCAGAGGCCGTGCAAGGACAAGGTGGATTGGGTTCAGTGTGATGGGGGATGTGATGAGTGGTTCCATCAGGTGTGTGTAGGCGTGTCATGCGAGATGGCTGAGAATGAAGACTACATCTGCACGGCTTGTTCCCGAAAGGCTGCAGGCATCACTGGGGGAGGGATGGGCGTTAAAGTAGGTGTAGAGACTGTGGTAATGACGTCGCCCATCTCCAGCACCCAGACACTGTCCCCTGTACCCCAGCCAGAGCCTCAGGAGGGCAGCTAGCCCACAGAGCCACCAGCCAGACTTCATACAAACTctataataattgttttttttagttctacACTCTACACCCTACAACCTCAATCAGTCGGAATGTGGATCCGGGCTTCTCCTTAATCTGATCTGTTGGTGGAAGAACGAGGGAACTATAATGTATAACTGGTCAGAGGATAATATGCATGAGCGGAGGTAACTGGTTCACTGCCTGTCTTGGTGTTTTTACTTGGGGACTCTATGCATGGATTGCCACCTAAACATGGATATATCAGAGGTAATTACTGGAGAAATTTAGAAGAGGACAAAAGCGCACAATGGAAACTTTCCTCTTTGCACCTTTAGATCAGAATCAAGGTCCCAGAAGGTGTTCtcttgtgttctctctctctagtgcGTTCCCTCTTGACACAAACTGCTTGACCACAGATGTTTTTAAGACCCCCATGAGCACACTCAAATTAAAGAGTTTATCATGAATGGACCAGGCTGTTTTTACCAGCTTACATCAGTCCTTTTTCTCTGTTCAAATCTTTACAGGCCaatccacacaaacacaaaccatGTAAAAAGGATACATCCATATTCTTTGATACACAGCTGATCTGGCTTCAGACTTCCCTTCATTAATAGCCGGTAGGAGGATGATTAACCTGCTCATCTACAGTTGATCCACCTGATCCataaacaaaatacagctcAATATGTAGAACTAGTTTAAAATTGTTCTATGTAGGTAAAATATTTATGATGTAAATAGATTTTACGCAGTCTGTGCGTTGATGTGGATGTTTTTTGTTGCTCACCTTTATTAAAACTATTCCTagtgaaacaaaccaaaatgatggttgttttatttgtgcttttaaaaaatctgtatgTTTCAATGACgcaaatacatatttttggagatacttg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85101 lncRNA upstream 16210 9882115 ~ 9884275 (+) True G63081
TU85086 lncRNA upstream 33984 9810872 ~ 9866501 (+) True G63067
TU85064 lncRNA upstream 255974 9642481 ~ 9644511 (+) True G63050
TU85061 lncRNA upstream 365654 9534573 ~ 9534831 (+) True G63047
TU85058 lncRNA upstream 399791 9500304 ~ 9500694 (+) True G63044
TU85138 lncRNA downstream 46357 9972252 ~ 9976111 (+) True G63090
TU85139 lncRNA downstream 54623 9980518 ~ 9984728 (+) True G63091
TU85141 lncRNA downstream 65863 9991758 ~ 9998972 (+) True G63093
TU85149 lncRNA downstream 147219 10073114 ~ 10073399 (+) True G63101
TU85151 lncRNA downstream 151784 10077679 ~ 10077996 (+) True G63103
XM_007237086.3 mRNA upstream 2481 9889217 ~ 9898004 (+) True LOC103036813
XM_007237093.2 mRNA upstream 117349 9780471 ~ 9783136 (+) True LOC103038615
XM_007237082.3 mRNA upstream 207196 9685357 ~ 9693289 (+) True LOC103035797
XM_022671319.1 mRNA upstream 261205 9618666 ~ 9639280 (+) True LOC103035489
XM_022671316.1 mRNA upstream 477204 9364591 ~ 9423281 (+) False phf21b
XM_007237091.3 mRNA downstream 3613 9929508 ~ 9945834 (+) False usp15
XM_007237087.3 mRNA downstream 3633 9929528 ~ 9967291 (+) True usp15
XM_007237088.3 mRNA downstream 3633 9929528 ~ 9967291 (+) False usp15
XM_007237089.3 mRNA downstream 3633 9929528 ~ 9967291 (+) False usp15
XM_022671322.1 mRNA downstream 7558 9933453 ~ 9967291 (+) False usp15
TU85065 other upstream 250398 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 459921 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1360362 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1367253 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3044723 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2542155 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2733553 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3230331 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4818840 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6496339 16422234 ~ 16426613 (+) False arid2

Expression Profile