RNA id: XM_022671324.1


Basic Information

Item Value
RNA id XM_022671324.1
length 2715
RNA type mRNA
GC content 0.46
exon number 19
gene id il17rel
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10042203 ~ 10070882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgcttttttatagaggaaaaaaacaacatcagaACATCCTAACCCAGAAAAATGGCCCGGTTCTAAAGCTGACGCTTCTCCCACAGACTTTCAGCACCTATCCCCTCGGCTTCAACGAAGATTTGGAACCAAGTTTTCCTCAACAGAATGACTTCAGCTCTCAGACTGGGACAGACTGGGATCCAGTGACTGGTGATGATGAGGAGTGTGGTCCTGTTGCTGCTGGTGTTCTCCAGCTACAGAGCTCGAGGGGAGCAGATAGAGAGGATTGAGGAATGTGGGGTCCGCTGTTCTCAGGGACTTCCTTGCGACGGCAGCTATCAAATATCTCTTCAGCAGTGCAAGAACCTGTCAGGTGGTGTGACCTCAGATGTGTTTAGCAACACCAGCATTTCCACAGTGATGAAGTGCTCTGGAAAACAGCGGTGCTCCCTTCATCTCAGAGTCAGCACTGATCTGCAGATCAATAggcACATCCGCGGCATCTACGTGTGCATGGTCACCACAGGGATGATGGAGCGCTGCAGAATTGTGAACTTTTCACGTGCATCCAGAGGGAGACTGTTAAATGAACAGGTAAACGTTAAGGATGACTGCCTGGAGGTGCGCTCAGGAGAGGATGTGCATGTAACTCTCAAAACCTGGCCGCACATCTGTAATGTGGCTGTTTACAGATCCTACAAAGTTCCAGGCTGCAGAAACTCTGACATACAGAGGAGTGTTCCTGGATGCATCACGGGAAGGATTCAGTATGATGTGGACGTGGAGAAGAAGGAGCTCTCTGTGAGTGTTTCAGACATGCTGGAGGATAAAGATTACCAGCTGAGACTCTGCCACAAGGGCTACATCTGCACGGGTACGGGAGCCCAGGCAGTGGTGGAAAAGGAGAATCCAAAGAAGAAAGTCACCCTGAAGTATTCCAAACCCGTGCCCTGTCTGTGCATTGAGGGCTGGTCAGTAATGATGGATGCTCCACGAGTTCAAGTCTGCCCCTTTAAAGACCGTGTGGAGGAGCTGTGGTCTGGGATAACCTTTGATCCAGTGGAGGAGACGCTATCATGGGAAGCAGCGTGCCAGGTTGATGCCACTGTTAACCTGTGTGAGCTGCAGGAGGGGGGCGTATGCCAAGAACTGGCCAGTTCCTCTCAGACGATCGTCAAAAGAAAAGTGACCTATTCGTCAGTGGATCCTCATCACCGGCTTTGCATGAAGTTCATCACAAAGGCAGGAGCGTGGGTTAAGTGCCCGTTTTCCGAAGGGAATTTCCCAGCCTGGGAAGTGACCACACAAGAGGGTCTCCGACAGCTGCTTGTGACATCCAGGGTCAAAACCAGTCTCTCCCTGAGCAAGTGTGCCAAAACCGGGGCTCATGAGTGTGAGGACATGGAGACCACCGTAGTAGAAGTGGAGAAATTTCAGACTGTAAAACCAGATCTGACCATGGATTTCTGTGAAGCGAGTGTCTGCATCAAGGCAAAGCGTACGGATGTGAAATATGGAGTGACCACTCTCTACTGCCCACCCCCATGCTCACTCTCCGTCTCCAAGTCCGAAGGTGATGACAGTGAATGGCAGCTAATGCATGTTGTGGTGCCGGTGGTTGCACTGACTACAGCTTTAATTGTGGTTGCTGTAGTGACGGGGATCGCAATGATAGTTTTTCAGATTAAACGGATAATGAAGGCTGCAGGTATCGCCCGCCTTCCAGGACctcacacagACTCATTCTCCTCAGTGACTGAAGCGTCCAACTCCAAAACTCAACTCAGCAAATCCGTCCTGTTCGACATATGCGGCTCTGGATCGTCCCAATTAAAATGTGGAGAGAGCTCCAGTCTTCTCAACGACTCCACAAAGCTCTTAGTAGAGGCGTAAGACTGAAGATGGCTCTGGATGgttcatttttgttttgctttgtttttattattcacaCAGGCAGGCACAAGGACAAAAAAGTGATGCTTTGAATGTACAAGAGTCTTGATGAGCGCATCATTATCATGGGAATTAATTCAAAGGCTATATTATGTCAAATATACTGTGTTACATACTGTATGCACTATTACTGCCAGATGTAGGTACACCAATCAGTCATAACATTTACCCTACCTCCTTGTTTCTGCACTCACTGTTCATCTAATCAGCTCCACTGAGAATATAggagcagtgacactgaggtgtttaaaaacttcagcagcactgctgtgtctgactctgccagtgtcacataaaaaataatactgtgcTGCTCTGTGATGGTCCTGTGTAGCCTGGTGGTCCTGACTattgaaaaacagagaaaaagataataataatggtataaTTATAGAACCATAAGGTGCTTCTTTATGGCAGGTGgaggtgtagaaacaaggatgtGGTGTATAGCTACCGTATATGCATTATGTCTCTAAGTGTATGTCTCTTCAGTGTCATTTTACTGTACTGCCAGTTGCCATGTGTTGAAATACATATGTATACATTTCTGCCTgagaatgcatttatttatatagtgtgtgtttatacgtttttactgtgtgtgtgtctgttgaaTTTCATGGATTTTTCTCAttgcagttatttttttatacctgTTGAATTTTATCTTCATGTGAACGTGCTATATAGGTCATTGTAAATAAGCTGTAACACTGCCATTATCTATTATGCAGTTATGTAAAGTTCTCAATAAAGTGCTACATATTGCTTTAAAA

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85141 lncRNA upstream 43231 9991758 ~ 9998972 (+) True G63093
TU85139 lncRNA upstream 57475 9980518 ~ 9984728 (+) True G63091
TU85138 lncRNA upstream 66092 9972252 ~ 9976111 (+) True G63090
TU85101 lncRNA upstream 157928 9882115 ~ 9884275 (+) True G63081
TU85086 lncRNA upstream 175702 9810872 ~ 9866501 (+) True G63067
TU85149 lncRNA downstream 2232 10073114 ~ 10073399 (+) True G63101
TU85151 lncRNA downstream 6797 10077679 ~ 10077996 (+) True G63103
TU85261 lncRNA downstream 147792 10218674 ~ 10218940 (+) True G63193
TU85262 lncRNA downstream 148677 10219559 ~ 10219895 (+) True G63194
TU85267 lncRNA downstream 176825 10247707 ~ 10248031 (+) True G63199
XM_007237087.3 mRNA upstream 74912 9929528 ~ 9967291 (+) True usp15
XM_007237088.3 mRNA upstream 74912 9929528 ~ 9967291 (+) False usp15
XM_007237089.3 mRNA upstream 74912 9929528 ~ 9967291 (+) False usp15
XM_022671322.1 mRNA upstream 74912 9933453 ~ 9967291 (+) False usp15
XM_022671323.1 mRNA upstream 74912 9945895 ~ 9967291 (+) False usp15
XM_015601062.2 mRNA downstream 239559 10310441 ~ 10316421 (+) True pim3
XM_007232396.2 mRNA downstream 338139 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 369132 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 369132 10440014 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA downstream 369132 10440014 ~ 10462751 (+) False brd1
TU85065 other upstream 392116 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 601639 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1502080 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1508971 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3186441 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2397168 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2588566 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3085344 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4673853 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6351352 16422234 ~ 16426613 (+) False arid2

Expression Profile