RNA id: XM_022671328.1


Basic Information

Item Value
RNA id XM_022671328.1
length 5790
RNA type mRNA
GC content 0.49
exon number 13
gene id brd1
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10440014 ~ 10464718 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTGTTGTTTGGGGGGGAAGGAGAAGCCCTGCGAGCGGCTGCTCATCGTCTGTGGGGGAAGAGAGGGATCGCTCCTGCTTTTGAATggctttaaaaactgttttccCCCCGCGGATCGCGCTCCGGGAACCGTAGCCTCGGCGTCCACGGCTCACCCGTGTTTTCCGTGAGTCCGGATTCAGCGGTGAGAGCTGCAACTGCGAGCCGTGGATGATATTCTGTGTGCGGAATCACAGCCGCCGAGCAGGCCGGGTCGCCATTACTTTCTGgagctgctgtttctgctgctgccgctgccgtCTCTGTTACCAGCAGCCTGAAGCGACGGGGCTACGAGCTTTCTAAGGGTCCACCATGAGGAAGAGAGCACGGCATTATAGACCTCCTGCCCCGCAGAGGTCGCGGTCGCCCTCTCCCATCAAACCCTCCCCGAACCGGGAGACTCTCACCTATGCACAGGCACAGCGCATGGTGGACCTGGAGGTGGATGGCCGGGTGCACCGGATCAGCATCTTTGACAagttggaggttgttgctgatgatgACCCCATGATCCAGGAGATGATGGAGTGCACCAGCAacaaggagaacacagagaagCCTCAGCAGGCCCCGCTGCGCTCTGCACGTCTCAAAATCAGTCAGCAAAAGAAAAGTGCCGCTCTGAATGCACAGAAGCCTCAGGCACCTGTCTGCACACTCCCAGAGCCCAAGTTCCGCCCTGTGGAGTACAACCTGCCGGCAGTGCCACGGAGAAGCTCGCAGTACTACAAGTACGAGGAGAAGACTTCGGAGGAGCTGGATGAGGAGGTGGAGTACGACATGGACGAGGAGGACTACGCCTGGCTGGATCTGGTCAAtgagaagagaaagagtgaaggtTTCAGCCAAGTGTCCCCCAACGTCTTTGAGTTCCTTGTGGATCGCTTTGAGAAGGAATCTTTTTTGGAGAGTCAGGGTCAGCAAGATCCACAGTCGCTGGTGGACGAGGATGCCGTGTGCTGCATCTGCATGGACGGGGAGTGTCTGGACAGCAATGCCATCCTCTTCTGTGACATGTGCAACCTGGCTGTGCATCAGGAGTGTTACGGAGTTCCGTACATCCCTGAAGGCCAGTGGCTGTGTCGCCATTGCCTGCAGTCTCCTTCCAAGCCTGCCGACTGCATCCTCTGCCCCAACAAAGGTGGTGCCGTGAAAAAGACTGAGGACGATCGCTGGGGTCACGTGGTCTGTGCCCTGTGGGTGCCTGAGGTGGGCTTCTCCAACACAGTCTTCATTGAGCCCATCGACGGAGTGGCAAACATCCCCCCTGCTCGCTGGAAACTCACCTGCTACCTCTGCAAGGAGAAGGGCGTCGGCGCCTGCATCCAGTGCCACAAAGCCAACTGTTACACCGCCTTCCACGTCAGCTGCGCACAAAAGGCCGGCCTCTTCATGAAGATGGAGCCCATCAAAGAAATGACTGAGGCCGGTGCTCCCACCTTCTCTGTGAAGAAGACGGCCTACTGTGGAGCCCACACTCCCAACGGCTCCGTCAGGAGACCCCTAACCATATACGACGACAccaaaaaccaaaccaaaaacgGATTCTGTCAgacagcagaaaaaaagggcATCCAAACGAggctgaaaaagaagcagaagaaagcGAAGAGCAAGAAGACTGCAGAGCCGGTGCCAGCTGTGCCAGCAACGTCTGTGCCTAGTTTTCCAACTCAACGGTTAAACGCAATCCTTAATCAAGTTTCTCTCCAGAAGAAGAAGGTATTCGTCGAGCTGGTCTTGAACTACTGGACCCTGAAGAGACAATCTCGGAACGGACTGCCGCTGATCAGACGACTTCACTCAAGTTTAcaatcccagaaaaacacacGGCCTaggcacagtgaggaggaAAGCCGAGCACTGAAGGAGCAGCTCAAGGAGTGGCATCGTTTGAGGCATGACCTTGAGAGAGCCCGGCTGCTGCTGGAGCTcatcagaaaaagagagaagctcAAAAGGGAGGAGATGAAGCTGCAGCAGTCGATGCTCGAGATTCAGCTTACTCCATTCACCATTCTGTTAAGGTCTGTGTTGGAACAACTGCAGGAAAAAGACCAGGCCAGGATCTTTGCAGAGCCTGTTAGCATCACAGAGGTGCCTGATTACCTGGACCACATTAAGCACCCCATGGACTTCTCTACCATGAGGACCCGTATAGACGCACAATACTACAGGAATATTGATGAGTTTGAGGCTGATTTTAATCTCATTATAGCAAACTGCATGAAATACAACGCCAAGGATACCTATTTCCACCGTGCTGCTGTCAGACTGAGGGACCAGGGCGGGGCCTTGCTCAGGAAGACGAGGCGGCAGATCGAGTGCATCGGCTTCGATTCTGATAGCGGCATGCATACAACTGACGTTCCTAATGTTGAGGCACCTGCTCATTTCTCCTGGGAAGAAGTGGACCGGTTGCTGATCCCAGCCAATCGGCAGCACATGTCGCTTGACGAGCAGCTCAAAGAGCTACTGGAGAAGCTGGACCTGACAACGGCCATGAAGACCAGTCCCTCTCGCAGCAAACGACTGAAGTTGCTGAGGAAGGCCATTAGTGACGTGAGGATGGAGATGAGTCTGAGGAGCGGTCGAACACTCTCGTCTGAGCAGAGGAAAACAGCAGTGGAGCCTTCAGTAGGCTTTAACTCGGCTGAAGAAGGTGACACATCAGCTCCTCCAAAACTGGAACCCTCAGACTCGCACATCCTCCTCCCAAACACCGACGGCCCCTCTGAGCCCCCTACGCTGAAGCCCATCGAGCCGTGCTCAGATCAGCACCGACCGCGCAAACCCGACAGACACCTGGACGCCTTCCCATCCCGCAAAGAAAACCTGAACGGACACTCGCGAGGCCGGCTGCTGCTCGATGATGGCGACGTCAGTGTGGTTGCCACATCTACCCTGGCCGAGCCGTCCGGTCCGGTAAACAGACGGACGTCCATACTTTTCCGTAAGTCTAAAAGTTCGAGCCCCCAGAAGGCCATGCGGGGTGGTGAAGCACAGGCTGAGTGTCCTCAGCTGGGCGCCAAGACCTTCTTGTCTGTGGTGATCCCCCGTCTGGAGACCCTGCTCCACACCAAGAAGAGAACGCGCAGTGCCAGCAGGGGCAGCGAAGGGGAAGAGGATTTGCCCACCAAACGGCTTAACACTGgccTGTCGAACGGGTTTGTTCTGGAGCAGCAGAAAAAGTTGAGTCCCAGCAGGAAGCAGGAGCCTCGCCGCAGGTGTGCTTCAGAATCCAGCATCTCCTCCAGCGGCAGTCTGCTGGGTACAGCCAGCATTCCTCTGAGTTTCCCAAAGTGCGGAAAGGGGAAGCCGGCGCTCGTCCGGAGACACACTGTGGATGACAAAAGCGAACTCATCGCTTGCATAGAGACCGGTAACTTCGCTAAAGCTGCTAGACTCGCTGCTGAGGTTGGCAACAGCAATATATGGATGCCTGCTACTGCTGCAACTGTTGTTCTGGAACCTTTAAAACTAGTTTGGGCAAAATGTAGCGGATACCCCTCCTACCCTGCCTTGATAATCGACCCTCACATGCCCCGGGTGGGCTGCCATCACAACGGAGTGTCCATTCCAACCCCCCCTCTCGATGTGCTCAGGATCGGAGAGCAGATGCAGTACAAGTCCGAAGAGAAGCTCTTTCTCGTCCTCTTCTTCGACAACAAGCGCAGCTGGCAATGGCTTCCTAAATCCAAAATGGTTCCTCTTGGGATCGACAAGACCATCGACAAGATCAAAACGATGGAGGGACGCACTTCTTCTATCCGCAAGGCCGTTCACGTTGCCTTTAACCGGGCGATGAACCACCTGAACCGAGTTCAGGACGAGCCCACCAGTGACCTTAGTGATATCGACTAGCCTCCTCTCTGTACAGCTCAGCGGACCTGGGCGGGGGCGGGGTTTCTAAAAGCCTTAGTATTCATCACGCCAGCCTGGCACTTACTCAGAGGTGTCTCTGGGGTGGTGTTACTCCAAACAGGATTTCTCAGTTTAGAAATTTGCAGTAATTGCAGTGACTAAATGTATGtcttttaatgttgatttgtTCTGATTAATTAACCATATCTCATTAAATCAAGCAaaggaataatatatatatataaaaacaacactTTCAGATTAAGGAAAAAAccttaactttcagtggaagtctgaaataataataatatataaaaaaatatttttattttatttcattttggtaCTTTTGTATTAGCCTATTCATTGAACAATTATGAATCacattatgttaaaataaaaactgtactGCATACATAGTAAAAAAGTGTACTATATCATTAAACTTTAACACAAACATTAACAAATTTGTGcagcaaattaaataaaatgctacTTGAATTATTAGTTAGCTAGATAACTTCAACCCAAAATGGACATTTGGACATTTCTGTTTGACTAGTCTCACTTTTGGTTTAggttttcttttagctaaaCTGAGAAATCCTGCTTTTAAGGCTAGAGATGTACTTGCTGTTTGGTCATGCCTTTACGTAGACAACCAGCTTCATCATGAATGTAACTGTTCACATATTTGCCTGTGTGCTACAGGCGTTACTGAGTGGAGGCCTCCACTTGCTGCAGTGGCAAGAACATATTATACAGGTTCAGGTAGCTGTTTTTTGAAGCTCTTAATCAGAGCCTGTCCATGGAGACCCTGCCCACTTCTAATTTCCTCTAGTTATATTAGATAATTACTGCAGAACTTCTACAGGGAGTGAATCCCCAATAAATGGATCTGaatagctaaatagctaaaaacacaaatgaaaaTAGTGTTAGAAAAACGAAAACTcaaattgtttaattttaaagagtAGATTAatgtattttgctttaaaaaaagcaaagaaatctataactgtgagctgattggctggatgccagagttcctttttttcttttttaatctttgTCTGCACAGCTAAAACATTTGATATGGTTCTGTATTTTGGAAAATGAGAATTTTTCAGCATAaacattttgatttgatttgattaatgcTCCATTAGAACCCATTACTTTTTGACTCACTCAATCCTTTAGTGTCTGTCTAACCTAGAATGCATTCTCCAAtgggtattctcctctctagAAGTTTTCTGATTACATTGATTCTGCTAAATGCTGCTCTGCCCCCTggcatttttgtgtgtgtactgcacctcacatatatatattgcgCACAACCAACACACCAAACTAATGCAGGCTATGCGAGGCAGCCATCATGCATACGTACGTGAACGCATACTTTACAGCAAGTACTTTTTTTCTAGCCTTAGTTTGAACCTGTCGCCTGTCTCCTCTCTGCTCTTCTTCGTCCTCCGctccggctgctgctgctgtgttgaATGTGTGGAGAGGTTCCAGCATTTCTTCCTCACTGTGCCGAGTGACCATCGAGTGACCGTCGCCGAGTGACTGCTGCCAACCCCACTGCCACTCGCCACGTCTCTCACTTAACTCTGCCTGGCGTTTTCATTTCCAGTTATTtaaggaactgtgtgtatataacTGTAAATGACCCCATGCTAACTTATTCTGTAGAGTTACCGCAGTGggtactgtacatttcatttcttttttatagtAGTATTTatattccttttctttttttattattattactggtttgtttatttgactaatTTGAACGTGAATTACCTTCAGCATCCCCTTGTCTTCCTCACTgatgcaggagagagagagaaaaagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650153.1 lncRNA upstream 86274 10346960 ~ 10353740 (+) True LOC111192872
TU85267 lncRNA upstream 191983 10247707 ~ 10248031 (+) True G63199
TU85262 lncRNA upstream 220119 10219559 ~ 10219895 (+) True G63194
TU85261 lncRNA upstream 221074 10218674 ~ 10218940 (+) True G63193
TU85151 lncRNA upstream 362018 10077679 ~ 10077996 (+) True G63103
TU85330 lncRNA downstream 84629 10549347 ~ 10549622 (+) True G63244
TU85332 lncRNA downstream 99978 10564696 ~ 10565793 (+) True G63246
TU85343 lncRNA downstream 165410 10630128 ~ 10630473 (+) True G63254
TU85349 lncRNA downstream 1165924 11630642 ~ 11635507 (+) False G63260
TU85350 lncRNA downstream 1165924 11630642 ~ 11635507 (+) True G63260
XM_007232396.2 mRNA upstream 19205 10409021 ~ 10420809 (+) True alg12
XM_015601062.2 mRNA upstream 123593 10310441 ~ 10316421 (+) True pim3
XM_022671324.1 mRNA upstream 369132 10042203 ~ 10070882 (+) True il17rel
XM_022671322.1 mRNA upstream 472723 9933453 ~ 9967291 (+) False usp15
XM_022671343.1 mRNA downstream 1515653 11980371 ~ 11986784 (+) True LOC103028484
XM_007234936.3 mRNA downstream 1525882 11990600 ~ 11997857 (+) True alg10
XM_022671347.1 mRNA downstream 1896466 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 1896466 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 1896466 12361184 ~ 12373369 (+) False c7h12orf40
TU85065 other upstream 789927 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 999450 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1899891 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1906782 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3584252 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2003332 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2194730 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 2691508 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4280017 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 5957516 16422234 ~ 16426613 (+) False arid2

Expression Profile