RNA id: XM_022671343.1


Basic Information

Item Value
RNA id XM_022671343.1
length 1703
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC103028484
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11980371 ~ 11986784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCGATGGGTAgtataactcgacagaacaccggtccaAAGTCAAAGTCTTCTGTTTAGGTTTTCTGCTAAAGTCTCTGACTTTCCCTACGATGGAGAACACCACAGCAGACAGTATCACTCTTCAGGTGCTGAAGGAAGCGCGGGAGACGGTGATGTCCAGCCCTCTGGAGGTGATCAACACCCCCATGATCCCGTGAGAGACCACACTGCCTCTCCACGAGTCCTGCAGCATCCACCTGAAGCTGGAGAACATGCAGAGGACAGGTTCATTTAAAATCAGAGGTGTAGCAAATCAGTATGCTCGAAAAGCCAAAGGAGGTCATTTTGTCACAATGTCAGCAGGGAACTATGGAAAATCATTTGCCTTTGCCTCTAAACACTACGGAACCAAAGGCAAAGTGGTGATGCCTGAAACCGCCCCCATCTCCAGATCCCTGCTAATACAGAGTTTTGGTATAGAAGTTGAGCGAGTGCCGACGCCACGTCTCTTGGATGTAGTCAATCACTGTGTTCAAGAGGAAAACATGACCTTCATGCATTCTTTCAATGATCCAGATCTCATAACAGGACACGCCAGTCTAGGCTTTGAGGTTCTGGAGGTGGTTCCTAATCCTGATATAGTGGTGGTGTGCTGTGGTGGAGGGGGGTTACTGGCTGGAGTGGCCGCTGCCATTAAATTGTCAGGATGTGATGAAACTAAAATCTATGGAGTGGAGCCAGAAGGAGCATGCACAATGTACAAAAGCTTCATTGATAACAAACCTGTCGGCATGGACAGCAAAAGCATCGCTTCTGGTCTTGCACCTCCCTTTGCAGGTGCTCTACCGTTTGCGCTGTGTCAGAAGTACGTGGAGGAGATAGTGCTGGTAACAGATGAGGAAATCAAGTCCGCTGTGTCCACACTCTACAGAGCTGGTCTGGTAGTAGAACCATCAGGTTCTGCTGCTTTTGCTGCTGTCATTAACGGCAGAATACCCAACATCACCGGCAAAACTGTGGTGGTCATTCTGAGTGGAGGAAACATTGGGAAAGATGAGCTCACCAATTTCCCTGACTGAGATAGgagtttaaaacatgcattaatgcatcatcctaaaatgtgatttatatgatattaattatagtatatgtataaatattcatgagcaaaagccTAAATTCTATCGTTTCTTCTaacccactcctccactggactaaagcagcgttataccggatcaccaaagcatcttttttttttcataaaaaacagGTCCcagggcattcattcatactagagacctcaactagacattttaaaatgaatgaaaaatatgAGACCTTTAAGGCAGAAATACAGTATGCTCGTAATTTAAGTCACTCCTGTGAAAATGCTGCTATAGAAAATAAAGATGTAGCATAAATTATCTGACCTTTGTGTGAGAGCTGCTGTGATGAGCGACAGATGTAGCCGCCACTCAGCAGGAGATCTACTTCTCCtctcattaaaaatgaatggagCAGAAAGATGAGGGCTGTTTAACCAGAGATACATATAAAAGCTACAAGTTGTAGCTACTGTATTAATACTAGGAAATTTGATGTAGACTGAGTTGTATTTAGAACCTCTTTGCAGTAGAAAGTTGTTTGTGCTACAGTGGGTACCCATACAAAAAAGGAACGATGTAAAATTTATTCATAAAACACATCTGAAATTGgccaaaaa

Function

GO: NA

KEGG:

id description
K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85415 lncRNA upstream 4818 11956885 ~ 11975553 (+) True G63303
TU85397 lncRNA upstream 168781 11811156 ~ 11811590 (+) True G63285
TU85380 lncRNA upstream 261829 11718022 ~ 11718542 (+) True G63269
TU85379 lncRNA upstream 278665 11701418 ~ 11701706 (+) True G63268
TU85357 lncRNA upstream 344825 11630642 ~ 11635546 (+) False G63260
TU85449 lncRNA downstream 214 11986998 ~ 11990396 (+) True G63328
TU85450 lncRNA downstream 20501 12007285 ~ 12007519 (+) True G63329
TU85543 lncRNA downstream 390362 12377146 ~ 12378927 (+) True G63410
XR_002650191.1 lncRNA downstream 702535 12689319 ~ 12696748 (+) True LOC111192954
TU85623 lncRNA downstream 712264 12699048 ~ 12746828 (+) True G63460
XM_022671327.1 mRNA upstream 1515653 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA upstream 1515653 10440014 ~ 10464718 (+) False brd1
XM_022671329.1 mRNA upstream 1515653 10440015 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA upstream 1517620 10440014 ~ 10462751 (+) False brd1
XM_022671331.1 mRNA upstream 1522788 10440014 ~ 10457583 (+) False brd1
XM_007234936.3 mRNA downstream 3816 11990600 ~ 11997857 (+) True alg10
XM_022671347.1 mRNA downstream 374400 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 374400 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 374400 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671349.1 mRNA downstream 375689 12362473 ~ 12373369 (+) False c7h12orf40
TU85065 other upstream 2330284 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 2539807 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 3440248 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 3447139 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 5124609 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 481266 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 672664 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 1169442 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2757951 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 4435450 16422234 ~ 16426613 (+) False arid2

Expression Profile