RNA id: XM_022671345.1


Basic Information

Item Value
RNA id XM_022671345.1
length 2501
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC103023221
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12029314 ~ 12246559 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacgcgcgcgcgcgcaTACTAGCTCACTCACAcgctccctcactcactcacgcgCACGCACGCACATGCTCTGGCCGGGGCGCGGGAGCTGCTCGCGCTGCGGTTCCTGGAAGGGCTCGGACTCCAGCGCGCGGGGTGTGTTTATCTCATGCCCTCAGCCGCGatgaacagcagcagcttcCTGAATATGGCGGCGATCGGAGACTTCGACCCGCTGAGCGCCGCCATCCCCGCCACCAAAGTTGAGATCACGGTCTCCTGCAGaaACCTGCTCGACAGGGACACGTTCTCCAAATCAGATCCAATCTGCGTGCTGTACACCCAGGGCATCGGCAACAAGGAATGGAGagagttCGGCAGGACAGAGGTGATCGACAACACCCTGAACCCAGAGTTTGTGCGAAAGTTCATCCTGGACTATTTCTTCGAGGAGAGGCAGAACCTGAGGTTTGATCTGTATGACGTGGACTCGAAGAGCAGCAACCTTTCTAAACATGACTTTCTGGGACAGGCGCAATGCACTCTGGGGGAGATCGTGGGCTCTATGGGGAGTCGGTTAGAGAAGCCTCTGGGGGGCATTCCTGGAAAGAAGTGTGGCACCATTATTGTGAAGGCTGAGGAGCTGAACAACTGCAGAGAATCTGTGATGATGCAATTTTGTGGCAACAAGCTGGACAAGAAGGACTTTTTCGGCAAGTCTGACCCTTTCCTCGTCTTCTACCGCAGCAATGAGGACGGAACATTCACTATTTGCCATAAGACAGAAGTGGTGAAGAACACCCTGAACCCTGTGTGGCAGGCCTTCAAGATCCCCGTCAGAGCCTTGTGTAACGGAGACTACGACAGaaCAATCAAGATCGAAGTGTATGACTGGGACAGAGATGGCAGCGTTTTCTCAGATGCCAAGGACACTGTACATCGTTTTAAAAGACTGGCAACCCAGGGCCATGCTAAACAATATCAGGAACATATCAGGTCCAACCATGATTTCATTGGAGAGTTCAGTACGAGCTACAGAGAGTTGTCCAGAGGCCAGTCCCAGTTTAACGTCTACGAGGTGATAAACCCGAAGAAGAAAGGCAAGAAGAAAAAGTACCTGAATTCTGGAACGGTAACACTCCTGTCCTTCCTGGTGGATATTGACGTCACTTTCCTGGACTACATTAAGGGCGGGACTCAGATTAATTTCACTGTGGCGATTGATTTCACCGCCTCGAATGGCAACCCTGCCCAGCCGACCTCTCTGCACTACATGAGTCCATACCAGCTCAACGCCTACGCCATGGCGCTGAAAGCCGTGGGAGAAATTATTCAGGATTATGACAGTGACAAGATGTTTCCCGCACTGGGTTTCGGTGCCAAACTTCCGCCTGACGGGCGAGTGTCCCACGAGTTCGCCCTGAATGGAAACCCTCAGAACCCGTATTGTAATGGAATAGATGGTGTGATGGAGGCGTACTACCAGAGCCTGAAGTCTGTCCAGCTGTACGGCCCCACCAACTTCTCCCCAGTCATAAACCATGTAGCCAGGTATGCTGCCTCAGTAAAGGACGGCTCTCAGTACTTCGTCCTGCTCATCATCACAGACGGAGTCATCTCCGACATGGCCCAGACCAAAGAGTCCATTGTCAATGCTTCCTGTCTTCCCATGTCAATTATCATCGTTGGCGTTGGACCGGCTGAGTTTGATGCGATGGTGGAGCTGGATGGAGATGAAGTGAGGATTTCGTCGAGAGGCAGATATGCAGAAAGAGACATTGTGCAGTTCGTTCCATTCCGAGACTACATCGACCGTACTGGGAACCACATCCTCAGCATGGCCCGGCTGGCGAAGGACGTCCTGGCCGAGATCCCCGACCAGTTCCTGTCCTACATGAAGACCAGGGGCATCAAACCCTCACCCGCGCCCCCTCCCTACACGCCCCCCGGACACCCGCTCCAGACCCAGATCTGATCCGCTAGCGtccgtctctccctctctctctttcggtatatctctatctctctctgaaACACTCAGTGATGTAGAGGGGCTCGCTCGCCcccctctatctgtctctctctcttgttgcaCTATGGGCAGTAGAAGGAAGACAGCAGCGTGGTCGGAGGAGGCCAGTGAGAGCAGATTTACTACAATTCTGTCagggtctctttctctctctctctctctctctctctcccgctctgcCTCGGAACCTGGCTAGCTTATCTGTTGTAGCCTCAGTGTTGGGATGGACAGGAGCCGGATGTTATTCCGGCTCTCTCTCGGACTGATAGTAGGAGATGATGGAGGGATGAGGCAGTGTCTCTTGGACTCAATCGCAGGTTTTTCCAGGAGAACGGGCCGGGGGTCTTCAGCCTCTGGCCGTGAACCCACTCTCTCGACTGTTGTAAATACCTTTGGAAATAGATATTTCCTCTTATTTATGTAtatccttctctctgtctctctccttcccttcttttttactttctcttttttactttctt

Function

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85505 lncRNA downstream 45754 11983296 ~ 11983560 (-) True G63384
TU85441 lncRNA downstream 206237 11817096 ~ 11823077 (-) True G63320
TU85368 lncRNA downstream 393799 11632650 ~ 11635515 (-) False G63265
TU85709 lncRNA upstream 73996 12320555 ~ 12380556 (-) False G63516
TU85712 lncRNA upstream 89060 12335619 ~ 12336210 (-) True G63519
TU85721 lncRNA upstream 118909 12365468 ~ 12379880 (-) False slc2a13
TU85720 lncRNA upstream 126630 12373189 ~ 12412582 (-) False slc2a13
TU85733 lncRNA upstream 281330 12527889 ~ 12529641 (-) True G63538
XM_015601784.2 mRNA downstream 38809 11986914 ~ 11990505 (-) True tprkb
XM_007234938.3 mRNA downstream 50555 11970797 ~ 11978759 (-) True trmu
XM_022671336.1 mRNA downstream 63507 11824846 ~ 11965807 (-) False LOC103026753
XM_007234949.2 mRNA upstream 8746 12255305 ~ 12320325 (-) True LOC103029962
XM_007234940.3 mRNA upstream 83474 12330033 ~ 12359741 (-) True LOC103029428
XM_007234950.3 mRNA upstream 126617 12373176 ~ 12500663 (-) True slc2a13
XM_007234956.3 mRNA upstream 437667 12684226 ~ 12689035 (-) True LOC103033667
XM_022671361.1 mRNA upstream 445031 12691590 ~ 12699482 (-) True LOC103024791
TU85294 other downstream 1618083 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 2406526 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 3855512 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 5291366 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 5305784 6722102 ~ 6723530 (-) True LOC111192868
TU85708 other upstream 73996 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 2538762 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 2747605 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 4338506 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 4635776 16882335 ~ 16887903 (-) False G64492

Expression Profile