RNA id: XM_022671348.1


Basic Information

Item Value
RNA id XM_022671348.1
length 2444
RNA type mRNA
GC content 0.44
exon number 12
gene id c7h12orf40
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12361184 ~ 12373369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGATTGGCTGGCAGCACGGTTAGCCTGTTAAGCTAACCTTAACCTGTTTTACTCTGATATCCGACTTTTACACGGCGATTTAACCTggaaaattacaataattatcatttttttatctgaGACGCTTCCATAAAGGGACATAAGCGGCATATTCATAATTTTatccattaatttatttatttatttgtaatttatttattcggCTGCTTCTTTAATATGAATTGGGTAGGAGGTTCACGGATCCACCATATAAAGGGCAATGATATGAAGAAACAAAAGGCCTTTTTCGAAAAGAGAAGGAGGCAGAAGTGGATGAATCCCCAGGGACCACCATTATCACCTGAGGGTGGCACTGCTGGGAACGTAGATCTGCTCACAATGTTTATTGCCAAccaaattgcattaaaaaaggaACACAATGATAAAGGAAAGACTAAAATAACCCATCTAGCCAATTCCAAAGGAACATTGAAACATATGGGTCAGCAGCCCTTAGAGTTACCAATGAGTCCATGTGCTCCATCAAGCTTGAATCTAGTGGAAAGCGAGCCTCGATAcagtgtCCATACTGAGggtctgaaaaagagaaaaacgaGTCTCCTGGAGGAGTTAAAGTTTAAAGCGCTGTCACCTGTAATGGAAGTCAATCAATCTGACAACAGTGCTTCAGACTATATGCACAGACATCACCACCATCAGGGTAGCGTCAGTTCCATCTCCTCAGCTTCCCCAGGCCTCTCAGAGGGCTTTCAGCCCAGACCCACAGCTCACATCTCCCCTCCAGTAGCATGGGAATCCTACTGCACACAGACCCCTGAGTTGAGACCCTTCTCCCAGCCAGTGGAGGTATGTGAGTATGATCCTTGGATGACTGCACCTCATCACACAACACAACCCACTCACATCAGCCCAGTAACAGCAACTCAGTTTGGGAGCCCCttacacagCACAGAGATCAGTGGGCCCTCTATGCGTGCAGCTGATGAATACCCACCTTCTGAACAAGAAAAGCCACTCTTTTTAGAGTTCAACACTGACGAATATGAAGATCAAGAGATGTTTGGTGAACGAATGATCAACATTAATCCTCAGGAGACGCCCTGTATGAGACCACATGATTTCAGTGAATCACACACCAGGGACTACAGTTCTGATTTCGAACCTCAGGAAAATAAGACACATATGCATCCTGCTGAGACGACTCCAACAACAGGAAGCCAATACTGCTCGTCAGAGATGAGCACAACAAGACGAGTCCTGTCCTTCAGTCAAAAGGTGATGCTTAACCACAGTGGTAGAGAGAAAGCAAGTAACGCACAGGGGGGTCTGAAAAGCTTGAGGAGGGCTAGCTGTGGACTCGACTGTGAGGAGGATCAGTTTGTTCCTTCTTGTCTACAGACTGAGGCGGAACGTGTCGGGATACGTGAGAAAACATCATCCAGAATGAGAGATATGGGAACACAGACAGCAGCTGCTTCCACTTCAGCTCGTCAAGATGCTTCAGTACAGTGCAGCCTATTAAAAGCAGAAAACAGGCTGAGTGTTTccactgagcacacagccccCTTTCACCAGCACAGCACTCGCAAATCCAGGAAAGTTCCCAGTTCTACCACTAGGAGGCACACTGGTAAAAGCAATGAAGGTCTGCTGAGTGTTACTCAGTGTACTCTATCAGAAATCCATAAAGTGAAGTGGAACACGCCCTGGAACACAGCAATGAACAAGGAGGCCACACAGCAGGCTCCTGGAACCATAACAGGACAGGAAAGTTCACCCAAATCTGAGAATCAAGCGTGCACAAATACTGAACATCCCATACCAGGACAGAACTGCTCCCAGGAGAAAGCACCAGaaCCTAAAGAGAAGCTGTCAGGGAACATAGTGGTGAGAGGAGAAAGGTGTGAAGGTCACGAGGAGGAGAGCGTGAATCCGAAGCCTGCTGAGAACGCCTGCAGCACTGAGGAGCATGGCAGAGAGAGAGGTGTGAACTGGGTCTCTGGGGAGGCGGAAAGTCTCCAGGAAATCGCAGATATTCTCCTAATGCTAAAGCAGAAAAACAAGCCTGAATGAAAGGAAAGGCAGAGATGACTCAGACCTGCTTTGCTTTGTATGTTTGTAAGTAAGCACCTGTTGCTGCTTCACACGTTCAGAAAGCTCTCAGGTGGCTTCTTATTTGTTTACCTCTTGTAGGACACACACTTTATGAGGGTCAAAGCTAAAAACGTAATTGAAACAGTGAGTgtacaattatatattttattgtttaaacttCCAAATGTCATGAATATATTCAGTTTTGTAGAATATAAATCTAGCAAAACTTTTACAGCGACAATAGTCAAATTTACTGTACAACACTATCCATATATTTGTATTCACTAGTTCTTCATTGACTGTAGAAACACTGCTCTGTAGATAATAAAGGTagataataatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85450 lncRNA upstream 353665 12007285 ~ 12007519 (+) True G63329
TU85449 lncRNA upstream 370788 11986998 ~ 11990396 (+) True G63328
TU85415 lncRNA upstream 385631 11956885 ~ 11975553 (+) True G63303
TU85397 lncRNA upstream 549594 11811156 ~ 11811590 (+) True G63285
TU85380 lncRNA upstream 642642 11718022 ~ 11718542 (+) True G63269
TU85543 lncRNA downstream 3777 12377146 ~ 12378927 (+) True G63410
XR_002650191.1 lncRNA downstream 315950 12689319 ~ 12696748 (+) True LOC111192954
TU85623 lncRNA downstream 325679 12699048 ~ 12746828 (+) True G63460
TU85629 lncRNA downstream 434498 12807867 ~ 12811899 (+) True G63465
TU85656 lncRNA downstream 784956 13158325 ~ 13162362 (+) False G63488
XM_007234936.3 mRNA upstream 363327 11990600 ~ 11997857 (+) True alg10
XM_022671343.1 mRNA upstream 374400 11980371 ~ 11986784 (+) True LOC103028484
XM_022671329.1 mRNA upstream 1896466 10440015 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA upstream 1898433 10440014 ~ 10462751 (+) False brd1
XM_022671172.1 mRNA downstream 137519 12510888 ~ 12556587 (+) True LOC103032294
XM_022671351.1 mRNA downstream 185291 12558660 ~ 12595497 (+) True LOC103032798
XM_022671352.1 mRNA downstream 230741 12604110 ~ 12626928 (+) True LOC103033113
XM_022671353.1 mRNA downstream 230741 12604110 ~ 12626928 (+) False LOC103033113
XM_022671354.1 mRNA downstream 259910 12633279 ~ 12650099 (+) True LOC103023853
TU85065 other upstream 2711097 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 2920620 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 3821061 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 3827952 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 5505422 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 94681 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 286079 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 782857 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2371366 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 4048865 16422234 ~ 16426613 (+) False arid2

Expression Profile