RNA id: XM_022671355.1


Basic Information

Item Value
RNA id XM_022671355.1
length 2417
RNA type mRNA
GC content 0.46
exon number 12
gene id pyroxd1
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12667180 ~ 12681027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCCTCCTCGGCCACCGTAGGCTGCTTTGAGTCAACAGTATGGCGGCGCTCAGCGCTGGGTTCGGGGTAAATAAAGAGTTTAGAGAGTAAAAAGAGCTCCTGGACCCGTTTACAGACTGCAGTTCATATAGGGAGGTTTACAACAGAGGGTTAGACTGATGTTAGAGGAGATTAAAGCGGTAGTTTTTACTGAATCTTTAGTTTAATAAAGAGAGGTGTAAACTCAGTCATCTCACTCCTCCTGTGTTTCCATAGATAGTTAGCTTGTTAGATAGATTTCTtcacagacaggcagacagatagacagaaagagagagaaaaacatacaaacagaTAAGTAGGTAAGTTAGGTTACTTTGTTTGCTAGCTTGTTAGTTAGCGTTAGGTAGGAAGGTAGCTGTAGCTAGCTAGTTGAGTAGTTAGATAagtaggttagttagttaacctagttaTTTGGTTAAATAGTATTAGCTAGATTAGGTAGTTAGATTGATAGTTAGGTAACTTAGGTAGTAAGTTAAGTAACtaacttagatagatagacagacagacacaccggttagttagttaaataggTTGGTTAggttagttaacctagttagTTAGGTGGCATTAGCTttataagatagatagatagatacgttagttatttagttagtaAGTTAGTTGGTTAGGTAGGATAGGATAGTTATGATGGCAGGAGGATCCGAGTCTGAGGCTCAGTTCAGGTTTGTCGTAGTAGGAGGAGGAATCGCTGGAGTCACCTGTGCTGAACAGCTCGCACTGCAGTTCCCCTCTGAGGCTGTAGCTCTGCTGACCGCTGCTCCGCTGGTGAAGACTGTGACCAATTTCAAGCAGGTCTCCAAGACCCTGGAGGACTTTGATGTGGAAGAACAGCCGTCCAGCATTCTGGAGGAGAAATATCCTAATCTGAAAGTCATTCAGTCTGCAGTCCGAGGACTTCATGCAGATCAGCAtACGCTGCAGACTGAGAACGGGCAGATTATTCATTATGAGAAGTTGTGTATCTGCACCGGCGGAAGGCCTAAACTCCTAAACCAGGATACTCCTAATGTACTGGGCATTCGAGACACAGACAGCGCTCAGGAGTTTCAGAAGCACTTATCAAAAGCGAAGCGTATGCTAGTTGTTGGAAATGGAGGAATTGCTTTGGAACTGGTGTATGAAGTGGAAGGCTGTGAAGTGATCTGGGCTATAAAGGATAAGGCCATAGGGAATACGTTCTTCGATGCTGGAGCTGCCCAGTTCCTCATCCCATCACTAGAGGCTGACAAACCTGAGAGAGCCCTGCCTTGTAAAAGAGCACGATACACCACCGACAAAACCACAGCCTCTACAGAAGAATCAAAGGAGCTTGGTAGTGCCTTAGGACCTGACTGGCATGAGGGCATCAGCCTCAGAGGAACAGAAGAGGTTTCCCACAGAGTTCATGTAGAGTATGAGTGTGAGATTGAGAAGATCTACTCCCAGCAGGACTTCCTTCAGTCTCCTCTGTACTCACAGAAATCACAGGATTTAGGGGTGTGGCCAGTGTATGCTCATTTAACCAATGGGAAGACGTATGGATGCGACTTCATTGTCAGTGCCACTGGCGTGGTGCCCAACACTGAACCTTTCCTTAAAGGCAACAAATTTGAGCTGGCAGAGGATCGGGGTCTGAGGGTGAATGATCACATGCAGACGTCTGAGCCAGACGTGTACGCAGCTGGAGACGTGTGCACTGCAGGCTGGGAGCACAGCGCTCTCTGGCAGCAGATGCGTTTATGGACGCAGGCGAGGCAGATGGGCTGGTACGCTGCACGCTGCATTGCAGCCGAAGTGTCGGGAGAGGCCATTGAGCTGGACTTCTGCTTTGAGCTCTTCTCTCACATCACCAAGTTCTTCAATTACAAGgtGGTGCTGTTGGGGAAGTTTAATGCGCAGGGTCTGGGTTTAGATCACGAGCTGCTGGTGCGCTGCACTAAAGGTCAGGAGTACGTGAAGGTGGTGCTGAGCGGAGGACGCATGGTTGGGGCGGTGCTTATCGGGGAGACAGACCTGGAGGAGACGTTTGAAAACCTCATTCTGAACCAGATGGACCTGTCAGCGTACGGCGAGGATCTTCTGAACCCAAACATCGACATCGAGGACTACTTCGACTGATCTTGTAGTTCAGGAACTCTGAAgaagcgcgagaggttttaatGTCATGGTTTAAATAAGTACAAGAAGAAAAGTCTCTTATAGAGATTTAGTGCAGCATCTTGGGATGTTTAATTTAAAGGCAAATAGGCACTTTTTCAGGGATTTGGCGATTCAGTTTTGCTTATTGGATGATATTTCTGATGCCTTTTCATTACATAAATTTAccctaataataaataataaattatttaattattattactcaCCCctga

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K24426 PYROXD1; pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85543 lncRNA upstream 288253 12377146 ~ 12378927 (+) True G63410
TU85450 lncRNA upstream 659661 12007285 ~ 12007519 (+) True G63329
TU85449 lncRNA upstream 676784 11986998 ~ 11990396 (+) True G63328
TU85415 lncRNA upstream 691627 11956885 ~ 11975553 (+) True G63303
TU85397 lncRNA upstream 855590 11811156 ~ 11811590 (+) True G63285
XR_002650191.1 lncRNA downstream 8292 12689319 ~ 12696748 (+) True LOC111192954
TU85623 lncRNA downstream 18021 12699048 ~ 12746828 (+) True G63460
TU85629 lncRNA downstream 126840 12807867 ~ 12811899 (+) True G63465
TU85656 lncRNA downstream 477298 13158325 ~ 13162362 (+) False G63488
TU85657 lncRNA downstream 477298 13158325 ~ 13163098 (+) True G63488
XM_022671356.1 mRNA upstream 8534 12653022 ~ 12658646 (+) True iapp
XM_022671354.1 mRNA upstream 17081 12633279 ~ 12650099 (+) True LOC103023853
XM_022671352.1 mRNA upstream 40252 12604110 ~ 12626928 (+) True LOC103033113
XM_022671353.1 mRNA upstream 40252 12604110 ~ 12626928 (+) False LOC103033113
XM_022671351.1 mRNA upstream 71683 12558660 ~ 12595497 (+) True LOC103032798
XM_022671360.1 mRNA downstream 20113 12701140 ~ 12743611 (+) False LOC103025111
XM_022671358.1 mRNA downstream 21070 12702097 ~ 12743611 (+) True LOC103025111
XM_022671359.1 mRNA downstream 21071 12702098 ~ 12743611 (+) False LOC103025111
XM_022671362.1 mRNA downstream 86811 12767838 ~ 12803571 (+) True LOC103034184
XM_022671363.1 mRNA downstream 475218 13156245 ~ 13161367 (+) True LOC111192955
trnag-gcc_1 other upstream 7662 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 198278 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3017093 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3226616 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 4127057 8533348 ~ 8540123 (+) True LOC103041471
TU85654 other downstream 475199 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2063708 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3741207 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3758193 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 4072016 16753043 ~ 16753560 (+) True G64431

Expression Profile