RNA id: XM_022671358.1


Basic Information

Item Value
RNA id XM_022671358.1
length 2646
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC103025111
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12701140 ~ 12743611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgttatttttgattAGATTAGCAACCCTGTCACGTTTTAACGTAAATAACTTGCCAATGTTGAtacaaatattaacattaatattaataatgactGTATGGTTATGGAGGAAAATATACTTTTTGTAGGATGAACATATCTTTCATGTTATGGGcttgaaaaaaatctgaaaattgtgAGAATGAAAAATACACAGTAAATTcaccagtgttaaattaacactattAGTGTTAAATGTTAAGGTTACCCTGAGAGTGTAAAACTGAACactaatgtgtttatttaaaactaGTGAATTTACTGTGTAGCTCCTGATTTGTTGGTGTACTGTGTGGGAAATCAGAAGATATGATGCATTCTGAAGTGCACTATTCAAAtgtgagcgtgtgtgagagagagacaggcttTATGGGGGAGAGCAGAGGGGAAGACACTCCTATCAGCGGGTCTGCAGATCCTCAGAAGGAGAATGAACCCGGTGGTCCAGAGCACAGAGAGAAGTGGGCCAATAAGACGGAGTTTCTGCTGTCCATGGCTGGAGAGATCATCGGCCTGGGGAACGTGTGGCGATTCCCTTACCTGTGCTACAAGAacggaggagGTGTTTTCTTCATCCCATACTTTGTTTTCCTCATCTTTTGCGGGATCCCCGTCTTTTTCTTGGAGACGACATTGGGTCAGTACACCAGTGAGGGAGGGATCACTGCCTGGAGGAAAATCTGTCCTATGTTTGAAGGAGTTGGAATTGCCTCTCAGGCTATAGTGATCTATCTGAACATCTACTACATTGTGGTTCTGGCCTGGGCTGTCTTCTACCTCTTCAACTGCTTCCAAACCACCCTGCCTTGGACAACCTGCAACAATGTGTGGAATACAGTAAACTGTCACACTTTCAACCGGAGCTTGCTGTCTTCAGGCCTGCACAGATCAGACTCTGACTGGTCCTTCCTCTACAACGAAACCGACAACTACGAAAACTATGTCTACAGCAGCAATTCCAGCATCTCTGAAAGTCTGCCGTATGATATCATCTCCCCGGAGGAGGAGTTCTGGCAGAATCGTGTGCAAAGGGTAAGAAACGATGATTTTCTGGGTCTTCCACACTATGACCTGGTGCTGTGTCTAATCCTGGTCTGGACAATCTGTTACTTCTGCATCTGGAAGGGAGTGAAATCTACTGGCAAGGTGGTGTATTTTACAGCTACATTTCCGTACCTCATGCTGCTGATCCTGTTCTTCAGAGGGGTCACTCTCCCTGGTGCTGCAAAGGGCATCACCTATTACCTTTACCCAGACATCTCCAAACTCGCCAGCCCTGATgtgTGGCGTGATGCAGGGACTCAAGTGTTTTTCTCCTATGCTGTGTGTCAGGGTGTTCTGACTGCTCTGGGCAGCTACAACAAATACCACAATGACTGCTACAAAGACTGCATAGCCCTCTGTGCTTTAAACAGTGGCACCAGCATCTTTGCTGGGTTTGCGGTGTTCTCCATACTGGGCTACATGTCTCATGAGCTGGACTTACCTATGGAAGAGATTGTGAACTCAGGTCCGGGTCTGGCGTTTATAGCTTACCCCAAAGCCCTGTCTCTGTTACCCGGCCCTCAGTTCTGGTCTTTCCTCTTCTTTCTGATGATCCTGTTCCTGGGGCTGGACAGCCAGtttgtgtgtgtggaaagtCTGGCCACGGCGCTTACTGATGTGTTTCCCAGAGTTCTGAGAAAGCCGAATCGCAGAGAGATCCTGGTGTTGGTCATCGCTGTGGTCTGCTTCCTGCTGGGGCTTCCTCTCGTCACTGGGggaGGGCTCCACCTCTTTAAACTGATAGACACGTACGGCCCCAGCGGAATCAACCTGCTCTTCATCGCCTGCTTTGAAACCATCGTCATCGCCTGGGTGTACGGTGCAGACCGTTTCTATGACAACATCGAGGATATGATAGGATACCGCCCCATGCCCGTGCTGAAGTACTGCTGGCTCTTCATCACCCCACTCATCTGCGGAGCCACCCTGCTGTATGATCTGAGCAGCAGTGTTCCACTGGGCTCTTCCGTTAACTTTGTACCCAGCTGGGGGTCGACGatagctgctctgctggctCTCACTCCGATGCTCTGTGTTCCTCTCTTTATCCTGATCTCCCTCAGAAGGGGTTCTGGTCAGTTCACCCCATCTCCTGACCTGCAACAAGCCAAACCTCTCAAGCCTCGGCTCACCATGTGCGGCAAAGTCATCGTTAAACGCCAGCGGCTTGTCCACAGAGCGTCGGATACAAGCAGAAAGGCAGAAAAAGCCCCTACAGAAGACACCAACGAGGTGTAACAAGCCAGGAGGCGTGTCCAGAAACCTTTTAGCCTCACTGTGCATGGGTTATACAGAATACCTGCATTGAAAGGAAGACCAGTCTCAAACTGAGACCATCTCTACagctaaaacttaaaaaaatgccaaaaaaaaactttggacaTGCAGCAAACAGACTCTGATCCTAGATCAGTGGTCCTTACTATGTTTTACAGTGAGTGTAGCCTCAAcctcaacctcttcctcatCTGGGAGGAAAAGGAATTTCTAATTATTATCTGATGTATGTCTATGACAGGGCTATAGAATGACTAAAGCTGATTGGAGAGCCATGTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650191.1 lncRNA upstream 5349 12689319 ~ 12696748 (+) True LOC111192954
TU85543 lncRNA upstream 323170 12377146 ~ 12378927 (+) True G63410
TU85450 lncRNA upstream 694578 12007285 ~ 12007519 (+) True G63329
TU85449 lncRNA upstream 711701 11986998 ~ 11990396 (+) True G63328
TU85415 lncRNA upstream 726544 11956885 ~ 11975553 (+) True G63303
TU85629 lncRNA downstream 64256 12807867 ~ 12811899 (+) True G63465
TU85656 lncRNA downstream 414714 13158325 ~ 13162362 (+) False G63488
TU85657 lncRNA downstream 414714 13158325 ~ 13163098 (+) True G63488
TU85662 lncRNA downstream 427191 13170802 ~ 13193768 (+) True G63490
XR_002650154.1 lncRNA downstream 428085 13171696 ~ 13172427 (+) True LOC111192873
XM_022671355.1 mRNA upstream 21070 12667180 ~ 12681027 (+) True pyroxd1
XM_022671356.1 mRNA upstream 43451 12653022 ~ 12658646 (+) True iapp
XM_022671354.1 mRNA upstream 51998 12633279 ~ 12650099 (+) True LOC103023853
XM_022671352.1 mRNA upstream 75169 12604110 ~ 12626928 (+) True LOC103033113
XM_022671362.1 mRNA downstream 24227 12767838 ~ 12803571 (+) True LOC103034184
XM_022671363.1 mRNA downstream 412634 13156245 ~ 13161367 (+) True LOC111192955
XM_022671364.1 mRNA downstream 466611 13210222 ~ 13242742 (+) True LOC103034836
XM_007234959.3 mRNA downstream 527566 13271177 ~ 13303112 (+) True st8sia1
XM_007234962.3 mRNA downstream 626069 13369680 ~ 13381915 (+) True LOC103036201
trnag-gcc_1 other upstream 42579 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 233195 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3052010 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3261533 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 4161974 8533348 ~ 8540123 (+) True LOC103041471
TU85654 other downstream 412615 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2001124 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3678623 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3695609 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 4009432 16753043 ~ 16753560 (+) True G64431

Expression Profile